Wall clock time and date at job start Sat Apr 11 2020 05:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38157 * 120.08119 * 2 1 4 4 F 1.35103 * 119.93980 * 0.02670 * 3 2 1 5 5 C 1.38581 * 120.12794 * 180.30137 * 3 2 1 6 6 C 1.38285 * 120.29244 * 359.72406 * 5 3 2 7 7 C 1.38110 * 120.15713 * 0.02562 * 6 5 3 8 8 Cl 1.73603 * 120.06559 * 179.97438 * 7 6 5 9 9 C 1.39564 * 120.07703 * 179.77297 * 2 1 3 10 10 C 1.47782 * 120.14733 * 359.97266 * 9 2 1 11 11 O 1.21554 * 119.99703 * 269.72950 * 10 9 2 12 12 N 1.34771 * 119.99844 * 89.72606 * 10 9 2 13 13 C 1.46501 * 120.00020 * 180.02562 * 12 10 9 14 14 C 1.52993 * 109.47405 * 179.97438 * 13 12 10 15 15 C 1.53781 * 113.61492 * 174.99701 * 14 13 12 16 16 C 1.53781 * 87.08070 * 140.06794 * 15 14 13 17 17 N 1.46506 * 113.61361 * 89.11956 * 16 15 14 18 18 C 1.36932 * 119.99948 * 156.53166 * 17 16 15 19 19 H 1.08003 * 120.00194 * 359.97438 * 18 17 16 20 20 C 1.38815 * 119.99870 * 179.97438 * 18 17 16 21 21 N 1.31617 * 119.99941 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99894 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47283 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46791 * 120.00116 * 22 20 18 25 25 H 1.48492 * 109.47273 * 240.00144 * 22 20 18 26 26 C 1.53773 * 87.17302 * 334.52628 * 16 15 14 27 27 H 1.09004 * 109.47176 * 270.23035 * 1 2 3 28 28 H 1.09001 * 109.47032 * 30.22366 * 1 2 3 29 29 H 1.08995 * 109.47361 * 150.22643 * 1 2 3 30 30 H 1.08006 * 119.85694 * 179.70452 * 5 3 2 31 31 H 1.08000 * 119.92018 * 179.97438 * 6 5 3 32 32 H 0.96997 * 120.00572 * 359.97438 * 12 10 9 33 33 H 1.09002 * 109.46995 * 59.99707 * 13 12 10 34 34 H 1.08998 * 109.46746 * 299.99904 * 13 12 10 35 35 H 1.08998 * 112.84975 * 43.80400 * 14 13 12 36 36 H 1.09001 * 113.61537 * 25.52248 * 15 14 13 37 37 H 1.08998 * 113.61680 * 254.61401 * 15 14 13 38 38 H 1.09002 * 113.61408 * 219.93560 * 16 15 14 39 39 H 0.96997 * 119.99707 * 336.52824 * 17 16 15 40 40 H 0.97000 * 119.99576 * 179.97438 * 21 20 18 41 41 H 1.09007 * 113.61678 * 140.01927 * 26 16 15 42 42 H 1.09000 * 113.61916 * 270.92600 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1995 1.1955 0.0000 4 9 1.5244 2.3658 0.0005 5 6 3.5853 1.1966 -0.0063 6 6 4.2838 0.0032 -0.0069 7 6 3.6037 -1.1988 -0.0017 8 17 4.4830 -2.6957 -0.0031 9 6 2.2065 -1.2077 0.0048 10 6 1.4726 -2.4904 0.0105 11 8 1.1755 -3.0159 1.0655 12 7 1.1326 -3.0774 -1.1541 13 6 0.4046 -4.3487 -1.1485 14 6 0.1443 -4.7938 -2.5889 15 6 -0.5093 -6.1816 -2.6963 16 6 -1.3682 -5.6024 -3.8328 17 7 -0.7548 -5.7328 -5.1569 18 6 -1.5397 -5.7240 -6.2789 19 1 -2.6110 -5.6212 -6.1878 20 6 -0.9585 -5.8470 -7.5335 21 7 0.3469 -5.9728 -7.6445 22 14 -2.0293 -5.8356 -9.0641 23 1 -3.4533 -5.6837 -8.6709 24 1 -1.6335 -4.7010 -9.9366 25 1 -1.8525 -7.1123 -9.8015 26 6 -1.1548 -4.2227 -3.1883 27 1 -0.3634 0.0041 1.0277 28 1 -0.3633 0.8880 -0.5173 29 1 -0.3634 -0.8920 -0.5103 30 1 4.1222 2.1338 -0.0111 31 1 5.3638 0.0111 -0.0122 32 1 1.3693 -2.6579 -1.9960 33 1 -0.5460 -4.2207 -0.6307 34 1 0.9986 -5.1052 -0.6358 35 1 1.0141 -4.6697 -3.2340 36 1 -1.0845 -6.4628 -1.8142 37 1 0.1768 -6.9633 -3.0224 38 1 -2.4048 -5.9386 -3.8116 39 1 0.2072 -5.8255 -5.2387 40 1 0.7530 -6.0591 -8.5212 41 1 -0.9895 -3.4238 -3.9113 42 1 -1.9061 -3.9692 -2.4404 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091104837.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:35 Heat of formation + Delta-G solvation = -56.406042 kcal Electronic energy + Delta-G solvation = -26411.662372 eV Core-core repulsion = 22331.836835 eV Total energy + Delta-G solvation = -4079.825538 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.07405 -41.53564 -40.20053 -39.33042 -37.66283 -36.05536 -34.99747 -34.11461 -32.25294 -31.71881 -28.95180 -28.21251 -26.43204 -25.85195 -24.90262 -23.13081 -22.95582 -21.76772 -20.01064 -19.39914 -19.05831 -18.23732 -17.49566 -17.43054 -17.23828 -16.81314 -16.66622 -16.24326 -15.72149 -15.70343 -15.06502 -14.88747 -14.73893 -14.60692 -14.57484 -14.33277 -14.02092 -13.96334 -13.71704 -13.27735 -13.09101 -12.94154 -12.91690 -12.72167 -12.64491 -12.27952 -12.15366 -12.12549 -12.05148 -11.62186 -11.48454 -11.18717 -10.92456 -10.78572 -10.21835 -10.17099 -9.72479 -8.99237 -7.95101 -5.23143 -0.39339 -0.19679 0.86520 1.32083 1.48288 1.48653 1.58603 1.93624 2.17195 2.56000 3.02954 3.34843 3.38095 3.46228 3.64772 3.72015 3.78212 3.88801 3.90659 4.13854 4.20861 4.30182 4.32770 4.40418 4.51242 4.54393 4.71413 4.74912 4.82241 4.86508 4.90031 4.93957 4.98740 4.99843 5.10972 5.21783 5.35237 5.45434 5.49319 5.54209 5.67091 6.28812 6.33035 6.97957 7.33883 8.11240 8.33203 9.28362 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.013133 B = 0.002480 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.525741 B =11288.300766 C =11676.891098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.080 4.080 3 C 0.094 3.906 4 F -0.130 7.130 5 C -0.107 4.107 6 C -0.080 4.080 7 C -0.026 4.026 8 Cl -0.055 7.055 9 C -0.110 4.110 10 C 0.569 3.431 11 O -0.561 6.561 12 N -0.705 5.705 13 C 0.140 3.860 14 C -0.102 4.102 15 C -0.133 4.133 16 C 0.143 3.857 17 N -0.721 5.721 18 C -0.240 4.240 19 H 0.076 0.924 20 C -0.075 4.075 21 N -0.969 5.969 22 Si 0.971 3.029 23 H -0.266 1.266 24 H -0.294 1.294 25 H -0.295 1.295 26 C -0.153 4.153 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.070 0.930 30 H 0.184 0.816 31 H 0.179 0.821 32 H 0.411 0.589 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.107 0.893 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.374 0.626 40 H 0.251 0.749 41 H 0.048 0.952 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.222 15.547 18.988 25.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.082 4.082 3 C 0.075 3.925 4 F -0.109 7.109 5 C -0.126 4.126 6 C -0.098 4.098 7 C -0.054 4.054 8 Cl -0.026 7.026 9 C -0.114 4.114 10 C 0.355 3.645 11 O -0.440 6.440 12 N -0.355 5.355 13 C 0.017 3.983 14 C -0.121 4.121 15 C -0.172 4.172 16 C 0.034 3.966 17 N -0.359 5.359 18 C -0.372 4.372 19 H 0.094 0.906 20 C -0.267 4.267 21 N -0.619 5.619 22 Si 0.800 3.200 23 H -0.190 1.190 24 H -0.221 1.221 25 H -0.222 1.222 26 C -0.193 4.193 27 H 0.104 0.896 28 H 0.110 0.890 29 H 0.089 0.911 30 H 0.201 0.799 31 H 0.196 0.804 32 H 0.247 0.753 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.126 0.874 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.206 0.794 40 H 0.059 0.941 41 H 0.067 0.933 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 6.861 15.037 19.601 25.640 hybrid contribution 0.072 -0.038 -1.508 1.511 sum 6.933 14.999 18.092 24.502 Atomic orbital electron populations 1.20873 0.88613 1.04407 1.03978 1.19946 0.97910 0.90226 1.00144 1.17507 0.90764 0.80472 1.03794 1.91528 1.80441 1.45143 1.93773 1.21604 0.91257 1.00904 0.98799 1.21199 1.02480 0.88272 0.97888 1.21136 0.90485 0.89357 1.04408 1.98422 1.75226 1.32287 1.96640 1.19475 0.92433 0.93360 1.06143 1.18098 0.78400 0.83994 0.84039 1.90799 1.55715 1.65416 1.32049 1.46025 1.57012 1.24124 1.08302 1.21406 0.96433 0.84047 0.96434 1.22537 0.97789 0.97512 0.94292 1.23331 0.99145 0.95499 0.99258 1.21383 0.95880 0.95115 0.84272 1.42320 1.06202 1.86642 1.00723 1.19692 0.91306 1.40245 0.85911 0.90567 1.25530 0.96948 1.03743 1.00508 1.69815 1.10101 1.58918 1.23108 0.85109 0.78524 0.76578 0.79775 1.19032 1.22125 1.22220 1.23762 0.97031 0.98878 0.99636 0.89636 0.88982 0.91141 0.79898 0.80360 0.75339 0.90629 0.91566 0.90181 0.87450 0.92419 0.92273 0.79380 0.94061 0.93349 0.88788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.16 9.44 71.24 0.67 -1.49 16 2 C -0.08 -1.54 5.92 -19.56 -0.12 -1.65 16 3 C 0.09 1.50 7.23 22.33 0.16 1.66 16 4 F -0.13 -2.16 16.47 44.97 0.74 -1.42 16 5 C -0.11 -1.18 10.02 22.36 0.22 -0.96 16 6 C -0.08 -0.98 9.81 22.25 0.22 -0.77 16 7 C -0.03 -0.50 6.35 22.60 0.14 -0.35 16 8 Cl -0.05 -1.14 28.04 -2.72 -0.08 -1.22 16 9 C -0.11 -2.39 5.63 -20.07 -0.11 -2.50 16 10 C 0.57 14.66 4.77 86.77 0.41 15.07 16 11 O -0.56 -18.25 17.11 -3.89 -0.07 -18.32 16 12 N -0.70 -16.43 5.55 -466.05 -2.59 -19.01 16 13 C 0.14 3.38 5.52 86.38 0.48 3.85 16 14 C -0.10 -2.82 3.64 -10.18 -0.04 -2.86 16 15 C -0.13 -3.93 7.38 31.12 0.23 -3.70 16 16 C 0.14 5.32 4.55 45.51 0.21 5.53 16 17 N -0.72 -35.12 5.31 -320.45 -1.70 -36.82 16 18 C -0.24 -13.02 9.97 84.04 0.84 -12.18 16 19 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 20 C -0.08 -4.24 5.50 84.86 0.47 -3.77 16 21 N -0.97 -58.28 13.06 21.65 0.28 -58.00 16 22 Si 0.97 45.45 29.55 68.60 2.03 47.48 16 23 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 24 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 25 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 26 C -0.15 -4.66 7.45 31.21 0.23 -4.42 16 27 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 28 H 0.09 1.38 7.64 -2.39 -0.02 1.37 16 29 H 0.07 1.34 7.08 -2.39 -0.02 1.33 16 30 H 0.18 0.80 8.06 -2.91 -0.02 0.77 16 31 H 0.18 1.15 8.06 -2.91 -0.02 1.13 16 32 H 0.41 8.71 8.46 -92.71 -0.78 7.92 16 33 H 0.08 1.78 7.85 -2.39 -0.02 1.77 16 34 H 0.07 1.66 8.14 -2.39 -0.02 1.65 16 35 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 36 H 0.11 2.57 8.10 -2.39 -0.02 2.55 16 37 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.06 2.21 8.11 -2.39 -0.02 2.19 16 39 H 0.37 19.58 7.90 -92.71 -0.73 18.85 16 40 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 41 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 42 H 0.09 2.41 7.91 -2.39 -0.02 2.39 16 Total: -1.00 -68.11 375.61 2.19 -65.92 By element: Atomic # 1 Polarization: 30.37 SS G_CDS: -0.44 Total: 29.93 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: 4.02 Total: -8.54 kcal Atomic # 7 Polarization: -109.82 SS G_CDS: -4.01 Total: -113.83 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: -0.07 Total: -18.32 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 0.74 Total: -1.42 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -0.08 Total: -1.22 kcal Total: -68.11 2.19 -65.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091104837.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.513 kcal (2) G-P(sol) polarization free energy of solvation -68.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds