Wall clock time and date at job start Sat Apr 11 2020 05:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 120.00069 * 2 1 4 4 H 1.48497 * 109.47455 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47456 * 300.00122 * 3 2 1 6 6 H 1.48501 * 109.46861 * 60.00563 * 3 2 1 7 7 C 1.38820 * 120.00183 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99814 * 179.97438 * 7 2 1 9 9 N 1.36930 * 119.99658 * 359.97438 * 7 2 1 10 10 C 1.46494 * 120.00188 * 180.02562 * 9 7 2 11 11 C 1.53786 * 113.61949 * 205.00227 * 10 9 7 12 12 C 1.53783 * 87.08273 * 219.93170 * 11 10 9 13 13 C 1.53000 * 113.61560 * 139.97738 * 12 11 10 14 14 N 1.46490 * 109.47180 * 176.52899 * 13 12 11 15 15 C 1.34773 * 120.00184 * 180.02562 * 14 13 12 16 16 O 1.21289 * 119.99952 * 0.02562 * 15 14 13 17 17 C 1.50702 * 120.00234 * 180.02562 * 15 14 13 18 18 C 1.50704 * 109.47062 * 180.02562 * 17 15 14 19 19 C 1.38270 * 119.97201 * 269.72329 * 18 17 15 20 20 C 1.38217 * 120.06064 * 180.27493 * 19 18 17 21 21 C 1.38319 * 120.01180 * 359.97438 * 20 19 18 22 22 Cl 1.73595 * 120.02299 * 179.97438 * 21 20 19 23 23 C 1.38547 * 119.95053 * 0.02562 * 21 20 19 24 24 F 1.35106 * 120.02686 * 180.02562 * 23 21 20 25 25 C 1.38195 * 119.98042 * 89.99847 * 18 17 15 26 26 C 1.53786 * 87.17018 * 25.38702 * 12 11 10 27 27 H 0.96993 * 119.99608 * 359.97438 * 1 2 3 28 28 H 0.97003 * 120.00302 * 0.02562 * 9 7 2 29 29 H 1.09005 * 112.84734 * 336.19781 * 10 9 7 30 30 H 1.09001 * 113.61612 * 105.38261 * 11 10 9 31 31 H 1.08998 * 113.61222 * 334.47951 * 11 10 9 32 32 H 1.09001 * 113.61590 * 270.79840 * 12 11 10 33 33 H 1.08999 * 109.46703 * 56.52955 * 13 12 11 34 34 H 1.09002 * 109.46849 * 296.53461 * 13 12 11 35 35 H 0.97000 * 120.00166 * 0.02562 * 14 13 12 36 36 H 1.08999 * 109.47380 * 60.00182 * 17 15 14 37 37 H 1.08997 * 109.47077 * 299.99707 * 17 15 14 38 38 H 1.08004 * 119.96705 * 0.27207 * 19 18 17 39 39 H 1.08000 * 119.99109 * 179.97438 * 20 19 18 40 40 H 1.07997 * 120.00007 * 359.70417 * 25 18 17 41 41 H 1.09006 * 113.61397 * 89.16368 * 26 12 11 42 42 H 1.09000 * 113.61266 * 220.05740 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0104 -1.2022 -0.0005 8 1 3.0904 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 6 1.2602 -4.8288 -0.5961 12 6 1.8498 -5.6982 0.5271 13 6 0.8479 -6.6868 1.1270 14 7 1.5225 -7.5208 2.1246 15 6 0.8323 -8.4698 2.7875 16 8 -0.3473 -8.6336 2.5578 17 6 1.5262 -9.3274 3.8143 18 6 0.5396 -10.3021 4.4041 19 6 -0.1852 -9.9554 5.5294 20 6 -1.0863 -10.8501 6.0753 21 6 -1.2643 -12.0933 5.4957 22 17 -2.3955 -13.2175 6.1814 23 6 -0.5382 -12.4412 4.3681 24 9 -0.7111 -13.6549 3.8004 25 6 0.3642 -11.5437 3.8234 26 6 2.0031 -4.4043 1.3441 27 1 -0.4849 0.8400 0.0004 28 1 0.3556 -2.3881 -0.0005 29 1 3.0657 -3.5638 -0.4059 30 1 1.5908 -5.1202 -1.5930 31 1 0.1799 -4.7009 -0.5278 32 1 2.7996 -6.1645 0.2655 33 1 0.4448 -7.3200 0.3367 34 1 0.0353 -6.1372 1.6022 35 1 2.4660 -7.3900 2.3081 36 1 1.9285 -8.6939 4.6048 37 1 2.3392 -9.8765 3.3394 38 1 -0.0471 -8.9847 5.9823 39 1 -1.6516 -10.5784 6.9545 40 1 0.9305 -11.8135 2.9443 41 1 1.1262 -4.1602 1.9439 42 1 2.9325 -4.3537 1.9113 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100705351.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:51 Heat of formation + Delta-G solvation = -40.190340 kcal Electronic energy + Delta-G solvation = -25285.967975 eV Core-core repulsion = 21206.845603 eV Total energy + Delta-G solvation = -4079.122372 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.30938 -40.39108 -39.26442 -38.39931 -36.96232 -34.75777 -33.38648 -33.06530 -31.15219 -30.36267 -28.69857 -26.72079 -25.13895 -23.92205 -23.46680 -22.50088 -21.10143 -20.62221 -19.11166 -17.96784 -17.29034 -17.17828 -17.01421 -16.87353 -16.13004 -16.08821 -15.58963 -14.88654 -14.77025 -14.58087 -14.20365 -13.99198 -13.80947 -13.56503 -13.45381 -13.27534 -13.01316 -12.67579 -12.23169 -11.93346 -11.88760 -11.84341 -11.78979 -11.44311 -11.32942 -11.26965 -10.88544 -10.56823 -10.32897 -10.15259 -9.97499 -9.87217 -9.54511 -9.40042 -9.11497 -9.00976 -8.90749 -6.99915 -5.81760 -3.10759 0.48651 0.66896 1.60300 2.45498 2.80806 3.23641 3.39843 3.45368 3.47817 3.63459 4.04993 4.18857 4.55046 4.57370 4.61891 4.68305 4.84276 4.92476 4.96646 4.98657 5.16731 5.19638 5.38073 5.42935 5.45555 5.49461 5.58781 5.76886 5.79842 5.88444 5.91612 6.05175 6.19464 6.24279 6.26588 6.30957 6.38623 6.54097 6.77860 7.06624 7.34797 7.66157 8.06075 8.36733 9.47891 10.06091 10.40077 11.40626 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.027021 B = 0.001582 C = 0.001546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.000664 B =17690.220985 C =18106.208347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.013 4.013 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.245 4.245 8 H 0.072 0.928 9 N -0.713 5.713 10 C 0.166 3.834 11 C -0.143 4.143 12 C -0.127 4.127 13 C 0.132 3.868 14 N -0.724 5.724 15 C 0.510 3.490 16 O -0.534 6.534 17 C -0.107 4.107 18 C -0.029 4.029 19 C -0.102 4.102 20 C -0.080 4.080 21 C -0.075 4.075 22 Cl -0.053 7.053 23 C 0.111 3.889 24 F -0.128 7.128 25 C -0.128 4.128 26 C -0.161 4.161 27 H 0.255 0.745 28 H 0.385 0.615 29 H 0.075 0.925 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.401 0.599 36 H 0.111 0.889 37 H 0.108 0.892 38 H 0.140 0.860 39 H 0.144 0.856 40 H 0.143 0.857 41 H 0.078 0.922 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.548 -26.621 11.802 29.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.376 4.376 8 H 0.090 0.910 9 N -0.350 5.350 10 C 0.053 3.947 11 C -0.182 4.182 12 C -0.146 4.146 13 C 0.009 3.991 14 N -0.375 5.375 15 C 0.295 3.705 16 O -0.410 6.410 17 C -0.146 4.146 18 C -0.030 4.030 19 C -0.121 4.121 20 C -0.099 4.099 21 C -0.103 4.103 22 Cl -0.024 7.024 23 C 0.091 3.909 24 F -0.106 7.106 25 C -0.147 4.147 26 C -0.202 4.202 27 H 0.065 0.935 28 H 0.219 0.781 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.106 0.894 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.235 0.765 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.158 0.842 39 H 0.162 0.838 40 H 0.161 0.839 41 H 0.096 0.904 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.688 -26.687 11.637 29.238 hybrid contribution 0.400 0.661 0.057 0.775 sum 3.088 -26.026 11.694 28.699 Atomic orbital electron populations 1.69671 1.05147 1.25671 1.57452 1.24782 0.95530 0.97826 1.02814 0.86117 0.78771 0.84071 0.77211 1.20531 1.21833 1.21850 1.19349 0.91102 0.84235 1.42905 0.91024 1.42415 1.05778 0.99893 1.86951 1.21550 0.95314 0.85056 0.92749 1.23448 1.01052 0.97015 0.96724 1.22638 0.98361 0.94389 0.99235 1.21449 0.95438 0.91981 0.90263 1.46041 1.13857 1.36156 1.41488 1.20376 0.87421 0.80715 0.81978 1.90765 1.15642 1.68970 1.65612 1.20741 0.97793 0.97119 0.98994 1.19212 0.96363 0.93081 0.94362 1.21070 0.95481 0.99692 0.95813 1.20951 0.98021 0.90765 1.00120 1.21004 0.97963 0.94168 0.97170 1.98389 1.59353 1.60809 1.83869 1.17312 0.98269 0.82292 0.93064 1.91545 1.94288 1.40964 1.83797 1.20945 0.99250 0.93377 1.01175 1.23974 1.01300 0.94974 0.99967 0.93471 0.78064 0.90688 0.91985 0.90111 0.89383 0.91764 0.91178 0.76499 0.87060 0.87346 0.84246 0.83779 0.83873 0.90380 0.92765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.85 13.06 55.49 0.72 -27.12 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.01 29.55 -169.99 -5.02 16.98 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 7 C -0.24 -6.65 9.97 -15.06 -0.15 -6.80 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.71 -17.38 5.41 -52.55 -0.28 -17.67 16 10 C 0.17 3.07 4.48 -67.03 -0.30 2.77 16 11 C -0.14 -2.16 7.40 -25.92 -0.19 -2.35 16 12 C -0.13 -1.55 3.75 -89.80 -0.34 -1.88 16 13 C 0.13 1.57 5.50 -4.05 -0.02 1.55 16 14 N -0.72 -6.72 5.56 -60.30 -0.33 -7.06 16 15 C 0.51 5.22 7.82 -10.99 -0.09 5.13 16 16 O -0.53 -7.97 16.03 5.55 0.09 -7.88 16 17 C -0.11 -0.64 5.83 -29.03 -0.17 -0.81 16 18 C -0.03 -0.23 4.37 -104.62 -0.46 -0.69 16 19 C -0.10 -0.77 9.70 -39.58 -0.38 -1.16 16 20 C -0.08 -0.63 9.83 -39.56 -0.39 -1.01 16 21 C -0.08 -0.70 6.33 -39.44 -0.25 -0.95 16 22 Cl -0.05 -0.48 28.62 -51.86 -1.48 -1.97 16 23 C 0.11 1.09 7.28 -39.39 -0.29 0.81 16 24 F -0.13 -1.36 16.84 2.25 0.04 -1.32 16 25 C -0.13 -1.11 9.68 -39.52 -0.38 -1.49 16 26 C -0.16 -2.48 7.45 -25.83 -0.19 -2.67 16 27 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.39 10.06 7.92 -40.82 -0.32 9.73 16 29 H 0.08 1.38 8.10 -51.93 -0.42 0.96 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.08 1.30 8.08 -51.93 -0.42 0.89 16 32 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.98 7.87 -51.93 -0.41 0.57 16 35 H 0.40 2.58 8.47 -40.82 -0.35 2.24 16 36 H 0.11 0.41 8.08 -51.93 -0.42 -0.01 16 37 H 0.11 0.39 8.08 -51.93 -0.42 -0.03 16 38 H 0.14 0.79 8.06 -52.48 -0.42 0.37 16 39 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 40 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 41 H 0.08 1.35 7.92 -51.93 -0.41 0.94 16 42 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 378.67 15.07 5.71 5.71 Total: -1.00 -33.21 378.67 -9.94 -43.14 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -5.67 Total: 7.24 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: -3.69 Total: -10.05 kcal Atomic # 7 Polarization: -51.95 SS G_CDS: 0.11 Total: -51.85 kcal Atomic # 8 Polarization: -7.97 SS G_CDS: 0.09 Total: -7.88 kcal Atomic # 9 Polarization: -1.36 SS G_CDS: 0.04 Total: -1.32 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -1.48 Total: -1.97 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.21 -9.94 -43.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100705351.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.953 kcal (2) G-P(sol) polarization free energy of solvation -33.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds