Wall clock time and date at job start Sat Apr 11 2020 05:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 119.99838 * 2 1 4 4 H 1.48505 * 109.47127 * 240.00266 * 3 2 1 5 5 H 1.48500 * 109.47333 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47162 * 120.00048 * 3 2 1 7 7 C 1.37875 * 120.00343 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00168 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99700 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46919 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47168 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.46711 * 305.00000 * 11 10 9 13 13 N 1.46900 * 109.47039 * 64.99673 * 11 10 9 14 14 C 1.50691 * 109.47173 * 184.99675 * 11 10 9 15 15 N 1.30987 * 126.44375 * 104.99983 * 14 11 10 16 16 C 1.35192 * 105.57910 * 180.02562 * 15 14 11 17 17 C 1.48501 * 126.40688 * 179.97438 * 16 15 14 18 18 C 1.39856 * 120.87083 * 0.02851 * 17 16 15 19 19 C 1.37884 * 119.15601 * 179.97438 * 18 17 16 20 20 N 1.31984 * 120.95267 * 359.97438 * 19 18 17 21 21 C 1.32255 * 121.91909 * 0.02562 * 20 19 18 22 22 O 1.35689 * 119.62599 * 180.02562 * 21 20 19 23 23 C 1.42899 * 117.00037 * 359.97438 * 22 21 20 24 24 F 1.39895 * 109.47029 * 299.99864 * 23 22 21 25 25 F 1.39898 * 109.47185 * 60.00201 * 23 22 21 26 26 C 1.38770 * 120.74293 * 359.97438 * 21 20 19 27 27 N 1.30713 * 107.18567 * 0.26752 * 16 15 14 28 28 O 1.21291 * 110.10301 * 359.53831 * 27 16 15 29 29 H 0.96996 * 120.00550 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.47142 * 60.00226 * 9 7 2 31 31 H 1.09000 * 109.47499 * 299.99783 * 9 7 2 32 32 H 1.08996 * 109.47287 * 59.99999 * 10 9 7 33 33 H 1.09007 * 109.46990 * 299.99982 * 10 9 7 34 34 H 1.00897 * 111.00017 * 60.00073 * 13 11 10 35 35 H 1.00901 * 110.99873 * 183.95509 * 13 11 10 36 36 H 1.08000 * 120.42472 * 359.97438 * 18 17 16 37 37 H 1.08002 * 119.52247 * 180.28135 * 19 18 17 38 38 H 1.09003 * 109.46489 * 179.97438 * 23 22 21 39 39 H 1.07998 * 120.51760 * 179.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 1 0.7880 -5.0072 0.8404 13 7 0.7290 -5.1181 -1.2567 14 6 2.4550 -6.1297 0.1226 15 7 2.6741 -6.8531 1.1923 16 6 3.6213 -7.7497 0.8366 17 6 4.2133 -8.7982 1.7058 18 6 3.8068 -8.9410 3.0364 19 6 4.3797 -9.9268 3.8117 20 7 5.3004 -10.7317 3.3152 21 6 5.7144 -10.6324 2.0631 22 8 6.6634 -11.4849 1.6007 23 6 7.1655 -12.4571 2.5199 24 9 7.7450 -11.8076 3.6151 25 9 6.1145 -13.2681 2.9612 26 6 5.1884 -9.6668 1.2165 27 7 3.9232 -7.5171 -0.4137 28 8 3.2589 -6.5954 -0.8384 29 1 -0.4851 0.8400 0.0004 30 1 0.6241 -2.5567 -0.8903 31 1 0.6247 -2.5571 0.8897 32 1 2.8720 -3.6043 0.8894 33 1 2.8720 -3.6042 -0.8906 34 1 1.3491 -5.1021 -2.0525 35 1 0.1647 -5.9545 -1.2547 36 1 3.0538 -8.2874 3.4514 37 1 4.0669 -10.0453 4.8386 38 1 7.9155 -13.0729 2.0236 39 1 5.5294 -9.5887 0.1947 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118102726.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:10 Heat of formation + Delta-G solvation = -44.755118 kcal Electronic energy + Delta-G solvation = -27857.593621 eV Core-core repulsion = 23246.396587 eV Total energy + Delta-G solvation = -4611.197034 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.113 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.44083 -47.56039 -45.72478 -41.04638 -38.45679 -36.87123 -36.07486 -33.55123 -32.94885 -31.43778 -31.21136 -30.34424 -26.92156 -26.64465 -25.39610 -24.58443 -23.66470 -22.88916 -21.49649 -20.33576 -19.33685 -18.73926 -18.24997 -18.18348 -17.76405 -16.67627 -16.48453 -16.27954 -16.05186 -15.89291 -15.52779 -15.30189 -14.77805 -14.38574 -14.29272 -14.21807 -14.10646 -13.88457 -13.45164 -13.23153 -12.83960 -12.73049 -12.54016 -12.39342 -12.26474 -12.10026 -11.84201 -11.26618 -11.03479 -10.91407 -10.66512 -10.53630 -10.26244 -9.92280 -9.78203 -9.42765 -9.23303 -9.09105 -8.92665 -8.31677 -5.98525 -4.01017 0.14766 0.61132 1.14270 1.91926 2.19414 2.66322 3.05727 3.16322 3.28374 3.34041 3.38793 3.41033 3.66481 3.69528 4.04775 4.31671 4.40980 4.46972 4.50739 4.59206 4.67700 4.74622 5.14546 5.18737 5.29181 5.37617 5.44588 5.63050 5.66418 5.71778 5.81406 6.31818 6.37427 6.48618 6.92974 7.06893 7.23325 7.41908 7.69620 7.86837 7.92562 8.04505 8.41281 9.05873 9.62487 11.12249 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.023767 B = 0.001858 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.835557 B =15063.762354 C =15454.302453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.059 3.941 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.525 4.525 8 H 0.052 0.948 9 C 0.032 3.968 10 C -0.103 4.103 11 C 0.185 3.815 12 H 0.128 0.872 13 N -0.811 5.811 14 C 0.171 3.829 15 N -0.471 5.471 16 C 0.196 3.804 17 C 0.066 3.934 18 C -0.155 4.155 19 C 0.144 3.856 20 N -0.515 5.515 21 C 0.308 3.692 22 O -0.316 6.316 23 C 0.426 3.574 24 F -0.192 7.192 25 F -0.193 7.193 26 C -0.145 4.145 27 N -0.369 5.369 28 O 0.086 5.914 29 H 0.261 0.739 30 H 0.038 0.962 31 H 0.016 0.984 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.350 0.650 35 H 0.341 0.659 36 H 0.157 0.843 37 H 0.174 0.826 38 H 0.179 0.821 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.257 -26.000 3.698 28.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.142 4.142 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.563 4.563 8 H 0.070 0.930 9 C -0.005 4.005 10 C -0.142 4.142 11 C 0.069 3.931 12 H 0.145 0.855 13 N -0.340 5.340 14 C -0.052 4.052 15 N -0.204 5.204 16 C -0.074 4.074 17 C 0.057 3.943 18 C -0.176 4.176 19 C -0.011 4.011 20 N -0.237 5.237 21 C 0.130 3.870 22 O -0.229 6.229 23 C 0.336 3.664 24 F -0.174 7.174 25 F -0.174 7.174 26 C -0.168 4.168 27 N -0.074 5.074 28 O 0.024 5.976 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.035 0.965 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.164 0.836 35 H 0.154 0.846 36 H 0.174 0.826 37 H 0.191 0.809 38 H 0.196 0.804 39 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 10.745 -26.443 4.179 28.847 hybrid contribution 0.659 0.670 -0.380 1.013 sum 11.404 -25.773 3.800 28.438 Atomic orbital electron populations 1.69948 1.05931 1.26659 1.50503 1.24976 0.94825 0.99080 0.95363 0.86699 0.79609 0.83338 0.78563 1.20288 1.21311 1.20353 1.21189 0.92892 0.91161 1.51056 0.92959 1.19015 0.93436 0.89529 0.98496 1.21875 0.99346 0.91571 1.01370 1.20966 0.89309 0.87172 0.95619 0.85459 1.58802 1.27008 1.45106 1.03071 1.31346 0.93997 0.98070 0.81818 1.72012 1.15582 1.06354 1.26449 1.23576 0.96043 0.97921 0.89877 1.17306 0.93941 0.91026 0.92077 1.22208 1.02242 1.00435 0.92746 1.22435 0.89686 0.88919 1.00068 1.67317 1.15672 1.28501 1.12234 1.19270 0.89047 0.89378 0.89260 1.86804 1.52389 1.43639 1.40045 1.23149 0.83829 0.80826 0.78615 1.93112 1.84072 1.82565 1.57634 1.93109 1.60989 1.72845 1.90502 1.20970 0.98641 0.95304 1.01858 1.74854 1.14963 1.04693 1.12918 1.85269 1.38743 1.34651 1.38944 0.92959 0.94402 0.96538 0.92212 0.92293 0.83560 0.84590 0.82554 0.80903 0.80434 0.82960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.08 13.29 55.43 0.74 -25.35 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 7 C -0.52 -14.28 9.11 -34.44 -0.31 -14.59 16 8 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 9 C 0.03 0.78 4.86 -27.88 -0.14 0.64 16 10 C -0.10 -1.90 4.78 -26.73 -0.13 -2.02 16 11 C 0.18 2.70 3.29 -68.87 -0.23 2.47 16 12 H 0.13 1.86 8.14 -51.93 -0.42 1.44 16 13 N -0.81 -10.64 8.67 -5.66 -0.05 -10.68 16 14 C 0.17 2.42 7.29 -12.99 -0.09 2.33 16 15 N -0.47 -6.90 11.35 -9.90 -0.11 -7.01 16 16 C 0.20 2.76 7.83 -156.14 -1.22 1.54 16 17 C 0.07 0.80 5.91 -104.61 -0.62 0.18 16 18 C -0.15 -1.57 9.79 -39.11 -0.38 -1.95 16 19 C 0.14 1.33 11.17 -17.62 -0.20 1.13 16 20 N -0.52 -5.76 8.05 -13.40 -0.11 -5.87 16 21 C 0.31 3.45 7.19 -17.17 -0.12 3.33 16 22 O -0.32 -3.00 10.41 -18.77 -0.20 -3.19 16 23 C 0.43 3.04 6.05 101.05 0.61 3.65 16 24 F -0.19 -1.81 16.57 2.25 0.04 -1.77 16 25 F -0.19 -1.78 16.57 2.25 0.04 -1.74 16 26 C -0.15 -1.65 9.72 -38.93 -0.38 -2.03 16 27 N -0.37 -5.35 11.94 30.95 0.37 -4.98 16 28 O 0.09 1.22 11.27 18.05 0.20 1.42 16 29 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 30 H 0.04 0.96 7.75 -51.93 -0.40 0.56 16 31 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.35 4.22 8.97 -39.29 -0.35 3.86 16 35 H 0.34 3.60 9.06 -39.29 -0.36 3.24 16 36 H 0.16 1.44 7.96 -52.49 -0.42 1.02 16 37 H 0.17 1.02 8.06 -52.49 -0.42 0.60 16 38 H 0.18 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.15 1.63 7.95 -52.49 -0.42 1.21 16 LS Contribution 357.95 15.07 5.39 5.39 Total: -1.00 -32.92 357.95 -6.04 -38.96 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -4.02 Total: 2.34 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: -3.31 Total: -3.77 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: 0.84 Total: -53.89 kcal Atomic # 8 Polarization: -1.78 SS G_CDS: 0.01 Total: -1.78 kcal Atomic # 9 Polarization: -3.59 SS G_CDS: 0.07 Total: -3.52 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.92 -6.04 -38.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118102726.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.798 kcal (2) G-P(sol) polarization free energy of solvation -32.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds