Wall clock time and date at job start Sat Apr 11 2020 05:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 119.99838 * 2 1 4 4 H 1.48505 * 109.47127 * 240.00266 * 3 2 1 5 5 H 1.48500 * 109.47333 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47162 * 120.00048 * 3 2 1 7 7 C 1.37875 * 120.00343 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00168 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99700 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46919 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47168 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.46711 * 305.00000 * 11 10 9 13 13 N 1.46900 * 109.47039 * 64.99673 * 11 10 9 14 14 C 1.50691 * 109.47173 * 184.99675 * 11 10 9 15 15 N 1.30987 * 126.44375 * 104.99983 * 14 11 10 16 16 C 1.35192 * 105.57910 * 180.02562 * 15 14 11 17 17 C 1.48501 * 126.40688 * 179.97438 * 16 15 14 18 18 C 1.39856 * 120.87083 * 0.02851 * 17 16 15 19 19 C 1.37884 * 119.15601 * 179.97438 * 18 17 16 20 20 N 1.31984 * 120.95267 * 359.97438 * 19 18 17 21 21 C 1.32255 * 121.91909 * 0.02562 * 20 19 18 22 22 O 1.35689 * 119.62599 * 180.02562 * 21 20 19 23 23 C 1.42899 * 117.00037 * 359.97438 * 22 21 20 24 24 F 1.39895 * 109.47029 * 299.99864 * 23 22 21 25 25 F 1.39898 * 109.47185 * 60.00201 * 23 22 21 26 26 C 1.38770 * 120.74293 * 359.97438 * 21 20 19 27 27 N 1.30713 * 107.18567 * 0.26752 * 16 15 14 28 28 O 1.21291 * 110.10301 * 359.53831 * 27 16 15 29 29 H 0.96996 * 120.00550 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.47142 * 60.00226 * 9 7 2 31 31 H 1.09000 * 109.47499 * 299.99783 * 9 7 2 32 32 H 1.08996 * 109.47287 * 59.99999 * 10 9 7 33 33 H 1.09007 * 109.46990 * 299.99982 * 10 9 7 34 34 H 1.00897 * 111.00017 * 60.00073 * 13 11 10 35 35 H 1.00901 * 110.99873 * 183.95509 * 13 11 10 36 36 H 1.08000 * 120.42472 * 359.97438 * 18 17 16 37 37 H 1.08002 * 119.52247 * 180.28135 * 19 18 17 38 38 H 1.09003 * 109.46489 * 179.97438 * 23 22 21 39 39 H 1.07998 * 120.51760 * 179.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 1 0.7880 -5.0072 0.8404 13 7 0.7290 -5.1181 -1.2567 14 6 2.4550 -6.1297 0.1226 15 7 2.6741 -6.8531 1.1923 16 6 3.6213 -7.7497 0.8366 17 6 4.2133 -8.7982 1.7058 18 6 3.8068 -8.9410 3.0364 19 6 4.3797 -9.9268 3.8117 20 7 5.3004 -10.7317 3.3152 21 6 5.7144 -10.6324 2.0631 22 8 6.6634 -11.4849 1.6007 23 6 7.1655 -12.4571 2.5199 24 9 7.7450 -11.8076 3.6151 25 9 6.1145 -13.2681 2.9612 26 6 5.1884 -9.6668 1.2165 27 7 3.9232 -7.5171 -0.4137 28 8 3.2589 -6.5954 -0.8384 29 1 -0.4851 0.8400 0.0004 30 1 0.6241 -2.5567 -0.8903 31 1 0.6247 -2.5571 0.8897 32 1 2.8720 -3.6043 0.8894 33 1 2.8720 -3.6042 -0.8906 34 1 1.3491 -5.1021 -2.0525 35 1 0.1647 -5.9545 -1.2547 36 1 3.0538 -8.2874 3.4514 37 1 4.0669 -10.0453 4.8386 38 1 7.9155 -13.0729 2.0236 39 1 5.5294 -9.5887 0.1947 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118102726.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:09 Heat of formation + Delta-G solvation = -70.160587 kcal Electronic energy + Delta-G solvation = -27858.695285 eV Core-core repulsion = 23246.396587 eV Total energy + Delta-G solvation = -4612.298698 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.113 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.05991 -48.19551 -46.84017 -41.82570 -39.18631 -38.17090 -37.14689 -35.17434 -34.26239 -32.55801 -32.03624 -31.92887 -28.23685 -27.58890 -26.32606 -25.91088 -24.81955 -23.86509 -22.81433 -21.69765 -20.20888 -19.39281 -19.33097 -18.87251 -18.80410 -18.29578 -17.50773 -17.32158 -17.10351 -16.83824 -16.48459 -16.28583 -16.17948 -15.66388 -15.49888 -15.00365 -14.95020 -14.53811 -14.28327 -14.17524 -14.10510 -14.05099 -13.84284 -13.44267 -13.38064 -13.23182 -13.07661 -12.77602 -12.57330 -12.49158 -12.34014 -11.90757 -11.66135 -11.36074 -11.10755 -11.06187 -10.65663 -10.46480 -10.01580 -9.99671 -8.11339 -6.20503 -0.77947 -0.17078 0.05150 1.15271 1.27471 1.44638 1.46150 1.52482 1.54364 2.13830 2.46390 2.46857 2.54719 2.62423 3.04338 3.22289 3.49078 3.52730 3.61739 3.69826 3.74490 3.77602 3.88540 4.01147 4.17873 4.31768 4.40308 4.47417 4.68214 4.81859 4.93213 4.93897 4.96057 5.24712 5.60763 5.63114 5.86409 6.00161 6.02042 6.32894 6.45306 6.48165 6.81909 6.97713 7.47193 8.99411 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.023767 B = 0.001858 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.835557 B =15063.762354 C =15454.302453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.003 3.997 3 Si 0.955 3.045 4 H -0.269 1.269 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.543 4.543 8 H 0.055 0.945 9 C 0.039 3.961 10 C -0.091 4.091 11 C 0.201 3.799 12 H 0.129 0.871 13 N -0.818 5.818 14 C 0.175 3.825 15 N -0.478 5.478 16 C 0.196 3.804 17 C 0.046 3.954 18 C -0.151 4.151 19 C 0.151 3.849 20 N -0.529 5.529 21 C 0.300 3.700 22 O -0.321 6.321 23 C 0.418 3.582 24 F -0.207 7.207 25 F -0.207 7.207 26 C -0.151 4.151 27 N -0.379 5.379 28 O 0.086 5.914 29 H 0.262 0.738 30 H 0.019 0.981 31 H -0.007 1.007 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.357 0.643 35 H 0.358 0.642 36 H 0.166 0.834 37 H 0.208 0.792 38 H 0.237 0.763 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.415 -26.910 4.096 29.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.195 4.195 3 Si 0.781 3.219 4 H -0.194 1.194 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.581 4.581 8 H 0.073 0.927 9 C 0.002 3.998 10 C -0.130 4.130 11 C 0.085 3.915 12 H 0.147 0.853 13 N -0.349 5.349 14 C -0.049 4.049 15 N -0.211 5.211 16 C -0.074 4.074 17 C 0.037 3.963 18 C -0.172 4.172 19 C -0.004 4.004 20 N -0.251 5.251 21 C 0.123 3.877 22 O -0.233 6.233 23 C 0.329 3.671 24 F -0.189 7.189 25 F -0.188 7.188 26 C -0.173 4.173 27 N -0.085 5.085 28 O 0.025 5.975 29 H 0.071 0.929 30 H 0.037 0.963 31 H 0.012 0.988 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.172 0.828 35 H 0.173 0.827 36 H 0.183 0.817 37 H 0.224 0.776 38 H 0.253 0.747 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 11.914 -27.373 4.559 30.199 hybrid contribution 0.306 0.873 -0.472 1.039 sum 12.220 -26.499 4.088 29.466 Atomic orbital electron populations 1.70072 1.07448 1.27526 1.51654 1.25838 0.95687 1.02810 0.95132 0.85654 0.78373 0.78967 0.78937 1.19402 1.21056 1.19607 1.21684 0.93361 0.92726 1.50377 0.92674 1.18823 0.93805 0.90798 0.96361 1.21576 0.98224 0.91728 1.01455 1.20532 0.88896 0.85550 0.96505 0.85324 1.58761 1.27170 1.46316 1.02671 1.31086 0.93846 0.98041 0.81911 1.72004 1.15904 1.06663 1.26543 1.23917 0.95606 0.97961 0.89911 1.17462 0.94861 0.91235 0.92791 1.22362 1.02211 1.00659 0.92011 1.22996 0.88491 0.87722 1.01237 1.67420 1.16278 1.29101 1.12313 1.19414 0.89401 0.89649 0.89285 1.86807 1.51889 1.43783 1.40856 1.24175 0.84201 0.80458 0.78276 1.93078 1.84173 1.82990 1.58646 1.93077 1.61971 1.73058 1.90724 1.20979 0.98761 0.95532 1.02043 1.74846 1.15330 1.05032 1.13336 1.85260 1.38685 1.34659 1.38850 0.92949 0.96266 0.98828 0.92500 0.91853 0.82775 0.82727 0.81651 0.77559 0.74721 0.82920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.90 13.29 21.45 0.28 -54.62 16 2 C 0.00 0.19 5.46 84.65 0.46 0.66 16 3 Si 0.96 43.53 29.54 68.60 2.03 45.56 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 5 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 7 C -0.54 -29.70 9.11 25.60 0.23 -29.47 16 8 H 0.06 2.91 7.74 -2.91 -0.02 2.89 16 9 C 0.04 1.92 4.86 29.85 0.15 2.06 16 10 C -0.09 -3.34 4.78 30.60 0.15 -3.19 16 11 C 0.20 5.75 3.29 44.17 0.15 5.89 16 12 H 0.13 3.69 8.14 -2.39 -0.02 3.67 16 13 N -0.82 -20.83 8.67 -171.81 -1.49 -22.32 16 14 C 0.17 4.80 7.29 88.35 0.64 5.45 16 15 N -0.48 -13.57 11.35 -302.61 -3.44 -17.00 16 16 C 0.20 5.39 7.83 137.34 1.08 6.46 16 17 C 0.05 1.08 5.91 -19.85 -0.12 0.96 16 18 C -0.15 -2.85 9.79 22.58 0.22 -2.63 16 19 C 0.15 2.50 11.17 84.59 0.94 3.45 16 20 N -0.53 -11.11 8.05 -309.16 -2.49 -13.60 16 21 C 0.30 6.45 7.19 84.76 0.61 7.06 16 22 O -0.32 -5.68 10.41 -90.08 -0.94 -6.62 16 23 C 0.42 5.17 6.05 113.37 0.69 5.86 16 24 F -0.21 -3.61 16.57 44.97 0.75 -2.87 16 25 F -0.21 -3.52 16.57 44.97 0.75 -2.78 16 26 C -0.15 -3.35 9.72 22.69 0.22 -3.13 16 27 N -0.38 -10.77 11.94 -59.23 -0.71 -11.47 16 28 O 0.09 2.37 11.27 74.64 0.84 3.22 16 29 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 30 H 0.02 0.99 7.75 -2.39 -0.02 0.97 16 31 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 32 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 34 H 0.36 8.28 8.97 -89.70 -0.80 7.47 16 35 H 0.36 7.13 9.06 -89.69 -0.81 6.32 16 36 H 0.17 2.78 7.96 -2.91 -0.02 2.76 16 37 H 0.21 1.85 8.06 -2.91 -0.02 1.83 16 38 H 0.24 0.01 8.14 -2.39 -0.02 -0.01 16 39 H 0.15 3.25 7.95 -2.91 -0.02 3.23 16 Total: -1.00 -71.03 357.95 0.52 -70.50 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -0.48 Total: 12.57 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: 5.42 Total: -0.57 kcal Atomic # 7 Polarization: -111.17 SS G_CDS: -7.84 Total: -119.01 kcal Atomic # 8 Polarization: -3.31 SS G_CDS: -0.10 Total: -3.41 kcal Atomic # 9 Polarization: -7.14 SS G_CDS: 1.49 Total: -5.65 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -71.03 0.52 -70.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118102726.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.343 kcal (2) G-P(sol) polarization free energy of solvation -71.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds