Wall clock time and date at job start Sat Apr 11 2020 05:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 119.99633 * 2 1 4 4 H 1.48499 * 109.46728 * 269.99894 * 3 2 1 5 5 H 1.48494 * 109.47027 * 29.99713 * 3 2 1 6 6 H 1.48498 * 109.46877 * 150.00043 * 3 2 1 7 7 C 1.37874 * 120.00182 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99981 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00201 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47426 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47367 * 180.02562 * 10 9 7 12 12 H 1.08996 * 109.47575 * 54.99317 * 11 10 9 13 13 N 1.46902 * 109.46670 * 294.99946 * 11 10 9 14 14 C 1.50700 * 109.47212 * 175.00236 * 11 10 9 15 15 N 1.30984 * 126.43841 * 254.99686 * 14 11 10 16 16 C 1.35192 * 105.57508 * 179.97438 * 15 14 11 17 17 C 1.48501 * 126.40724 * 179.97438 * 16 15 14 18 18 C 1.39856 * 120.87047 * 359.97438 * 17 16 15 19 19 C 1.37884 * 119.15601 * 180.02562 * 18 17 16 20 20 N 1.31984 * 120.95267 * 359.97438 * 19 18 17 21 21 C 1.32255 * 121.91909 * 0.02562 * 20 19 18 22 22 O 1.35689 * 119.62599 * 180.02562 * 21 20 19 23 23 C 1.42899 * 117.00037 * 359.97438 * 22 21 20 24 24 F 1.39895 * 109.47029 * 299.99864 * 23 22 21 25 25 F 1.39898 * 109.47185 * 60.00201 * 23 22 21 26 26 C 1.38770 * 120.74293 * 359.97438 * 21 20 19 27 27 N 1.30713 * 107.18557 * 0.26338 * 16 15 14 28 28 O 1.21290 * 110.10936 * 359.54188 * 27 16 15 29 29 H 0.96994 * 120.00446 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.47233 * 59.99768 * 9 7 2 31 31 H 1.09002 * 109.47312 * 300.00092 * 9 7 2 32 32 H 1.08995 * 109.47362 * 59.99616 * 10 9 7 33 33 H 1.09009 * 109.46617 * 299.99839 * 10 9 7 34 34 H 1.00902 * 111.00051 * 176.04962 * 13 11 10 35 35 H 1.00901 * 111.00094 * 299.99311 * 13 11 10 36 36 H 1.08000 * 120.42472 * 0.02562 * 18 17 16 37 37 H 1.08002 * 119.52247 * 180.28135 * 19 18 17 38 38 H 1.09003 * 109.46489 * 179.97438 * 23 22 21 39 39 H 1.07990 * 120.51485 * 180.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4806 -4.9871 -0.0001 12 1 0.7886 -5.0068 -0.8420 13 7 0.7284 -5.1188 1.2549 14 6 2.4553 -6.1297 -0.1239 15 7 2.6750 -6.8525 -1.1940 16 6 3.6220 -7.7493 -0.8382 17 6 4.2137 -8.7979 -1.7073 18 6 3.8073 -8.9406 -3.0379 19 6 4.3799 -9.9267 -3.8131 20 7 5.3011 -10.7311 -3.3168 21 6 5.7151 -10.6318 -2.0647 22 8 6.6654 -11.4833 -1.6029 23 6 7.1679 -12.4550 -2.5223 24 9 6.1175 -13.2672 -2.9627 25 9 7.7460 -11.8051 -3.6180 26 6 5.1894 -9.6661 -1.2182 27 7 3.9148 -7.5247 0.4158 28 8 3.2585 -6.5960 0.8374 29 1 -0.4850 0.8400 -0.0004 30 1 0.6248 -2.5571 -0.8897 31 1 0.6242 -2.5567 0.8903 32 1 2.8722 -3.6043 0.8904 33 1 2.8721 -3.6042 -0.8896 34 1 0.1641 -5.9553 1.2522 35 1 1.3480 -5.1034 2.0511 36 1 3.0545 -8.2869 -3.4529 37 1 4.0737 -10.0393 -4.8427 38 1 7.9196 -13.0693 -2.0266 39 1 5.5304 -9.5880 -0.1965 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118102727.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:12 Heat of formation + Delta-G solvation = -70.247334 kcal Electronic energy + Delta-G solvation = -27858.563098 eV Core-core repulsion = 23246.260638 eV Total energy + Delta-G solvation = -4612.302460 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.113 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.05985 -48.19545 -46.83982 -41.82568 -39.18627 -38.17059 -37.14728 -35.17464 -34.26241 -32.55712 -32.03626 -31.92913 -28.23750 -27.58874 -26.32642 -25.91128 -24.81984 -23.86510 -22.81567 -21.69680 -20.20876 -19.39306 -19.33062 -18.87245 -18.80479 -18.29829 -17.50778 -17.32257 -17.10327 -16.83881 -16.48300 -16.28583 -16.17779 -15.66357 -15.49820 -15.00380 -14.95015 -14.53805 -14.29279 -14.17307 -14.10389 -14.05118 -13.84608 -13.44255 -13.38051 -13.23158 -13.07665 -12.79626 -12.56791 -12.47768 -12.33804 -11.90858 -11.66391 -11.36200 -11.09684 -11.06155 -10.65624 -10.47008 -10.01624 -9.99715 -8.11628 -6.20667 -0.77935 -0.17072 0.05217 1.15305 1.27475 1.44383 1.44678 1.52673 1.55530 2.13829 2.46224 2.46850 2.54726 2.62436 3.04352 3.22116 3.49098 3.52732 3.61751 3.69839 3.74498 3.77613 3.88560 4.01196 4.17872 4.31716 4.40336 4.47417 4.68214 4.81858 4.93236 4.93917 4.96106 5.24735 5.60903 5.63124 5.86405 6.00156 6.01977 6.32834 6.45316 6.48082 6.81901 6.97758 7.47103 8.99341 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.023753 B = 0.001858 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.537554 B =15063.136758 C =15454.833695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.003 3.997 3 Si 0.956 3.044 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.542 4.542 8 H 0.055 0.945 9 C 0.039 3.961 10 C -0.091 4.091 11 C 0.201 3.799 12 H 0.129 0.871 13 N -0.818 5.818 14 C 0.175 3.825 15 N -0.478 5.478 16 C 0.196 3.804 17 C 0.046 3.954 18 C -0.151 4.151 19 C 0.151 3.849 20 N -0.529 5.529 21 C 0.300 3.700 22 O -0.321 6.321 23 C 0.418 3.582 24 F -0.206 7.206 25 F -0.207 7.207 26 C -0.151 4.151 27 N -0.379 5.379 28 O 0.086 5.914 29 H 0.262 0.738 30 H -0.007 1.007 31 H 0.019 0.981 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.358 0.642 35 H 0.357 0.643 36 H 0.166 0.834 37 H 0.208 0.792 38 H 0.237 0.763 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.442 -26.901 -4.120 29.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.195 4.195 3 Si 0.781 3.219 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.580 4.580 8 H 0.073 0.927 9 C 0.002 3.998 10 C -0.130 4.130 11 C 0.085 3.915 12 H 0.147 0.853 13 N -0.349 5.349 14 C -0.049 4.049 15 N -0.211 5.211 16 C -0.074 4.074 17 C 0.037 3.963 18 C -0.172 4.172 19 C -0.004 4.004 20 N -0.251 5.251 21 C 0.123 3.877 22 O -0.233 6.233 23 C 0.329 3.671 24 F -0.188 7.188 25 F -0.189 7.189 26 C -0.173 4.173 27 N -0.085 5.085 28 O 0.025 5.975 29 H 0.070 0.930 30 H 0.012 0.988 31 H 0.037 0.963 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.173 0.827 35 H 0.172 0.828 36 H 0.184 0.816 37 H 0.224 0.776 38 H 0.253 0.747 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 11.935 -27.375 -4.575 30.212 hybrid contribution 0.297 0.880 0.464 1.038 sum 12.232 -26.496 -4.111 29.471 Atomic orbital electron populations 1.70083 1.07445 1.27454 1.51749 1.25841 0.95687 1.02816 0.95153 0.85593 0.78745 0.79311 0.78251 1.20139 1.20935 1.19071 1.21711 0.93363 0.92719 1.50228 0.92679 1.18828 0.93811 0.90809 0.96370 1.21575 0.98221 0.91725 1.01463 1.20533 0.88878 0.85563 0.96510 0.85316 1.58767 1.27160 1.46304 1.02682 1.31089 0.93697 0.98097 0.82007 1.72005 1.15722 1.06798 1.26581 1.23916 0.95785 0.97940 0.89753 1.17461 0.94861 0.91230 0.92796 1.22362 1.02241 1.00609 0.92029 1.22996 0.88488 0.87705 1.01258 1.67420 1.16264 1.29103 1.12326 1.19414 0.89395 0.89653 0.89288 1.86807 1.51788 1.43865 1.40876 1.24175 0.84239 0.80430 0.78266 1.93076 1.62011 1.72996 1.90743 1.93079 1.84229 1.82969 1.58614 1.20978 0.98757 0.95538 1.02041 1.74844 1.15661 1.04798 1.13243 1.85263 1.39034 1.34145 1.39014 0.92958 0.98820 0.96259 0.91854 0.92489 0.82735 0.82776 0.81649 0.77559 0.74721 0.82923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.90 13.29 21.45 0.28 -54.62 16 2 C 0.00 0.17 5.46 84.65 0.46 0.63 16 3 Si 0.96 43.56 29.54 68.60 2.03 45.59 16 4 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.54 -29.63 9.11 25.60 0.23 -29.40 16 8 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 9 C 0.04 1.90 4.86 29.85 0.15 2.04 16 10 C -0.09 -3.34 4.78 30.59 0.15 -3.19 16 11 C 0.20 5.75 3.29 44.17 0.15 5.89 16 12 H 0.13 3.69 8.14 -2.39 -0.02 3.67 16 13 N -0.82 -20.82 8.68 -171.81 -1.49 -22.31 16 14 C 0.17 4.80 7.29 88.36 0.64 5.45 16 15 N -0.48 -13.56 11.35 -302.58 -3.44 -16.99 16 16 C 0.20 5.39 7.83 137.34 1.08 6.46 16 17 C 0.05 1.08 5.91 -19.85 -0.12 0.96 16 18 C -0.15 -2.85 9.79 22.58 0.22 -2.63 16 19 C 0.15 2.50 11.17 84.59 0.94 3.45 16 20 N -0.53 -11.11 8.05 -309.16 -2.49 -13.60 16 21 C 0.30 6.45 7.19 84.76 0.61 7.06 16 22 O -0.32 -5.68 10.41 -90.08 -0.94 -6.62 16 23 C 0.42 5.17 6.05 113.37 0.69 5.86 16 24 F -0.21 -3.52 16.57 44.97 0.75 -2.78 16 25 F -0.21 -3.61 16.57 44.97 0.75 -2.87 16 26 C -0.15 -3.35 9.72 22.69 0.22 -3.13 16 27 N -0.38 -10.76 11.94 -59.23 -0.71 -11.47 16 28 O 0.09 2.37 11.27 74.60 0.84 3.22 16 29 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 30 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 31 H 0.02 0.99 7.75 -2.39 -0.02 0.97 16 32 H 0.06 2.25 8.14 -2.39 -0.02 2.24 16 33 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 34 H 0.36 7.13 9.06 -89.69 -0.81 6.32 16 35 H 0.36 8.28 8.97 -89.69 -0.80 7.47 16 36 H 0.17 2.78 7.96 -2.91 -0.02 2.75 16 37 H 0.21 1.85 8.06 -2.91 -0.02 1.82 16 38 H 0.24 0.00 8.14 -2.39 -0.02 -0.01 16 39 H 0.15 3.25 7.95 -2.92 -0.02 3.23 16 Total: -1.00 -71.06 357.96 0.52 -70.54 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -0.48 Total: 12.45 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: 5.42 Total: -0.54 kcal Atomic # 7 Polarization: -111.15 SS G_CDS: -7.84 Total: -118.99 kcal Atomic # 8 Polarization: -3.31 SS G_CDS: -0.10 Total: -3.41 kcal Atomic # 9 Polarization: -7.14 SS G_CDS: 1.49 Total: -5.65 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -71.06 0.52 -70.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118102727.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.292 kcal (2) G-P(sol) polarization free energy of solvation -71.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds