Wall clock time and date at job start Sat Apr 11 2020 05:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35242 * 126.07223 * 2 1 4 4 C 1.40366 * 107.87120 * 179.97438 * 3 2 1 5 5 N 1.40408 * 125.97050 * 179.97438 * 4 3 2 6 6 C 1.35166 * 124.25310 * 5.00478 * 5 4 3 7 7 O 1.21244 * 127.34409 * 355.23687 * 6 5 4 8 8 C 1.50750 * 105.30922 * 175.20181 * 6 5 4 9 9 H 1.09001 * 112.59599 * 251.00305 * 8 6 5 10 10 C 1.54179 * 112.13716 * 122.77571 * 8 6 5 11 11 C 1.55980 * 101.80588 * 211.11373 * 10 8 6 12 12 F 1.39901 * 109.79564 * 262.62565 * 11 10 8 13 13 F 1.39898 * 110.64943 * 140.51179 * 11 10 8 14 14 C 1.54492 * 105.16558 * 21.34869 * 11 10 8 15 15 N 1.46737 * 106.40218 * 4.02802 * 14 11 10 16 16 C 1.33644 * 148.99746 * 144.56047 * 15 14 11 17 17 O 1.21537 * 124.08756 * 21.33955 * 16 15 14 18 18 N 1.31195 * 108.06398 * 0.02562 * 4 3 2 19 19 N 1.34970 * 126.07181 * 179.68962 * 2 1 3 20 20 C 1.46494 * 125.98244 * 0.02562 * 19 2 1 21 21 C 1.50708 * 109.46998 * 89.99779 * 20 19 2 22 22 H 1.07998 * 119.99969 * 0.02562 * 21 20 19 23 23 C 1.37879 * 119.99592 * 180.02562 * 21 20 19 24 24 N 1.31514 * 119.99415 * 179.97438 * 23 21 20 25 25 Si 1.86794 * 120.00288 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47304 * 89.99903 * 25 23 21 27 27 H 1.48495 * 109.47048 * 209.99987 * 25 23 21 28 28 H 1.48499 * 109.47201 * 329.99799 * 25 23 21 29 29 H 1.09002 * 109.47152 * 90.02399 * 1 2 3 30 30 H 1.09001 * 109.46980 * 330.02499 * 1 2 3 31 31 H 1.09004 * 109.47113 * 210.02480 * 1 2 3 32 32 H 1.07996 * 126.06472 * 0.02562 * 3 2 1 33 33 H 1.08993 * 110.85616 * 328.87264 * 10 8 6 34 34 H 1.09000 * 110.85229 * 92.51920 * 10 8 6 35 35 H 1.09002 * 110.06989 * 244.79112 * 14 11 10 36 36 H 1.08998 * 110.06560 * 123.26202 * 14 11 10 37 37 H 1.08994 * 109.47650 * 209.99767 * 20 19 2 38 38 H 1.09007 * 109.46907 * 330.00056 * 20 19 2 39 39 H 0.97004 * 120.00114 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0931 0.0000 4 6 3.6368 0.6547 0.0006 5 7 4.7752 1.4766 0.0003 6 6 4.7405 2.8243 0.0968 7 8 3.7585 3.5353 0.1166 8 6 6.1830 3.2550 0.1756 9 1 6.4580 3.6189 1.1655 10 6 6.5553 4.2465 -0.9449 11 6 8.0598 3.9099 -1.1820 12 9 8.8639 4.8121 -0.4774 13 9 8.3646 3.9478 -2.5469 14 6 8.2458 2.4792 -0.6294 15 7 6.9159 2.0198 -0.2127 16 6 6.0349 1.0224 -0.0901 17 8 6.3373 -0.1545 -0.0670 18 7 3.6336 -0.6573 0.0004 19 7 2.3017 -1.0909 0.0059 20 6 1.8504 -2.4846 0.0129 21 6 1.6960 -2.9698 -1.4055 22 1 1.9130 -2.3064 -2.2298 23 6 1.2779 -4.2605 -1.6509 24 7 1.1428 -4.6837 -2.8888 25 14 0.9021 -5.4075 -0.2253 26 1 -0.5292 -5.2795 0.1490 27 1 1.1847 -6.8083 -0.6293 28 1 1.7521 -5.0468 0.9376 29 1 -0.3633 -0.0004 -1.0277 30 1 -0.3633 0.8902 0.5135 31 1 -0.3633 -0.8898 0.5142 32 1 1.9721 2.1210 0.0004 33 1 5.9711 4.0528 -1.8444 34 1 6.4259 5.2760 -0.6108 35 1 8.9216 2.4934 0.2257 36 1 8.6403 1.8260 -1.4078 37 1 2.5848 -3.1018 0.5301 38 1 0.8915 -2.5533 0.5268 39 1 0.8490 -5.5919 -3.0615 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119621045.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:15 Heat of formation + Delta-G solvation = -21.045014 kcal Electronic energy + Delta-G solvation = -29666.001157 eV Core-core repulsion = 25055.832270 eV Total energy + Delta-G solvation = -4610.168887 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.113 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.52615 -47.64649 -42.96079 -40.67037 -38.79139 -37.73670 -35.80120 -33.70075 -32.28814 -31.39001 -31.24530 -30.07640 -27.32938 -26.70054 -25.69198 -23.86119 -22.55478 -22.17493 -21.32508 -20.01038 -19.09675 -18.43042 -17.69052 -17.47336 -17.19406 -17.13360 -16.72030 -16.11814 -15.90925 -15.47219 -15.21976 -15.09106 -14.64637 -14.50379 -14.27239 -13.96805 -13.92092 -13.72560 -13.45551 -13.23138 -12.85394 -12.72856 -12.66860 -12.57208 -12.45200 -12.08958 -11.72065 -11.67363 -11.40392 -11.01515 -10.88377 -10.72772 -10.55436 -10.14812 -9.95895 -9.70327 -9.57329 -8.81564 -8.34327 -7.87497 -6.29465 -4.33428 1.25060 1.37469 2.21947 2.44841 2.63838 2.83493 2.96999 3.12131 3.20378 3.21920 3.38062 3.42139 3.51317 3.76029 3.83046 4.12413 4.18906 4.33761 4.52092 4.79140 4.86864 4.96438 4.98741 5.04498 5.16493 5.25230 5.49846 5.71293 5.89707 5.99150 6.07906 6.21338 6.37390 6.54320 6.55069 6.85935 7.02937 7.15355 7.23178 7.63352 7.89563 8.24134 8.28637 8.74515 9.24766 10.82940 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.019632 B = 0.002894 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.880122 B = 9671.809016 C =10384.419665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.105 3.895 3 C -0.283 4.283 4 C 0.255 3.745 5 N -0.485 5.485 6 C 0.537 3.463 7 O -0.444 6.444 8 C 0.050 3.950 9 H 0.152 0.848 10 C -0.149 4.149 11 C 0.275 3.725 12 F -0.180 7.180 13 F -0.179 7.179 14 C 0.130 3.870 15 N -0.640 5.640 16 C 0.737 3.263 17 O -0.481 6.481 18 N -0.262 5.262 19 N -0.310 5.310 20 C 0.229 3.771 21 C -0.543 4.543 22 H 0.081 0.919 23 C 0.081 3.919 24 N -0.884 5.884 25 Si 0.872 3.128 26 H -0.270 1.270 27 H -0.279 1.279 28 H -0.263 1.263 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.154 0.846 33 H 0.115 0.885 34 H 0.127 0.873 35 H 0.113 0.887 36 H 0.117 0.883 37 H 0.054 0.946 38 H 0.050 0.950 39 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.122 20.063 7.317 23.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.026 4.026 3 C -0.314 4.314 4 C 0.004 3.996 5 N -0.227 5.227 6 C 0.322 3.678 7 O -0.310 6.310 8 C -0.059 4.059 9 H 0.169 0.831 10 C -0.188 4.188 11 C 0.237 3.763 12 F -0.161 7.161 13 F -0.160 7.160 14 C 0.009 3.991 15 N -0.383 5.383 16 C 0.439 3.561 17 O -0.346 6.346 18 N -0.091 5.091 19 N -0.092 5.092 20 C 0.111 3.889 21 C -0.581 4.581 22 H 0.099 0.901 23 C -0.124 4.124 24 N -0.521 5.521 25 Si 0.698 3.302 26 H -0.196 1.196 27 H -0.204 1.204 28 H -0.187 1.187 29 H 0.103 0.897 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.172 0.828 33 H 0.134 0.866 34 H 0.145 0.855 35 H 0.131 0.869 36 H 0.135 0.865 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 10.527 18.120 7.161 22.146 hybrid contribution -0.399 0.065 0.386 0.559 sum 10.128 18.185 7.547 22.141 Atomic orbital electron populations 1.20404 0.87124 1.03104 1.03854 1.21021 0.95178 0.86503 0.99931 1.20746 0.88669 0.99835 1.22183 1.18582 0.84495 0.89879 1.06616 1.43107 1.04971 1.07900 1.66707 1.20387 0.91171 0.80933 0.75270 1.90792 1.38123 1.57810 1.44298 1.23323 0.90633 0.89412 1.02526 0.83127 1.23676 0.92686 1.02057 1.00413 1.22152 0.90093 0.89182 0.74847 1.93084 1.75722 1.69211 1.78072 1.93097 1.94190 1.96938 1.31765 1.22635 0.81584 0.91880 1.03049 1.47968 1.13296 1.06904 1.70179 1.14673 0.79118 0.83771 0.78503 1.91113 1.78738 1.14045 1.50742 1.77709 0.98551 1.07991 1.24808 1.48854 1.01249 1.07517 1.51600 1.20116 0.95505 0.73216 1.00091 1.21124 1.47698 0.99147 0.90170 0.90054 1.24791 0.94388 0.97356 0.95868 1.69867 1.45370 1.18006 1.18851 0.86907 0.79385 0.81060 0.82860 1.19552 1.20393 1.18727 0.89685 0.90362 0.90720 0.82807 0.86633 0.85501 0.86903 0.86493 0.92820 0.93264 0.92034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.30 10.11 36.01 0.36 -0.94 16 2 C 0.10 2.02 6.93 -82.28 -0.57 1.45 16 3 C -0.28 -5.28 9.91 -39.85 -0.39 -5.67 16 4 C 0.26 5.18 7.68 -154.17 -1.18 3.99 16 5 N -0.48 -8.03 2.86 -66.12 -0.19 -8.22 16 6 C 0.54 6.82 7.59 -10.79 -0.08 6.74 16 7 O -0.44 -6.23 15.95 5.59 0.09 -6.15 16 8 C 0.05 0.41 3.97 -67.18 -0.27 0.14 16 9 H 0.15 0.74 8.14 -51.93 -0.42 0.32 16 10 C -0.15 -0.92 6.26 -24.52 -0.15 -1.07 16 11 C 0.27 1.79 2.67 -24.35 -0.07 1.73 16 12 F -0.18 -1.17 17.09 2.25 0.04 -1.13 16 13 F -0.18 -1.49 17.12 2.25 0.04 -1.46 16 14 C 0.13 0.90 7.31 -3.13 -0.02 0.88 16 15 N -0.64 -6.88 4.09 -170.05 -0.70 -7.58 16 16 C 0.74 11.97 8.51 -88.42 -0.75 11.22 16 17 O -0.48 -10.00 16.89 5.33 0.09 -9.91 16 18 N -0.26 -6.22 11.55 31.48 0.36 -5.86 16 19 N -0.31 -7.08 3.59 -58.32 -0.21 -7.29 16 20 C 0.23 5.46 5.06 -5.19 -0.03 5.43 16 21 C -0.54 -15.14 9.94 -34.44 -0.34 -15.48 16 22 H 0.08 2.56 8.06 -52.49 -0.42 2.14 16 23 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 24 N -0.88 -26.21 13.96 55.43 0.77 -25.44 16 25 Si 0.87 20.02 27.47 -169.99 -4.67 15.36 16 26 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 28 H -0.26 -5.80 6.54 56.52 0.37 -5.43 16 29 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.07 1.09 7.06 -51.93 -0.37 0.72 16 32 H 0.15 2.56 6.70 -52.49 -0.35 2.21 16 33 H 0.12 0.80 8.01 -51.93 -0.42 0.39 16 34 H 0.13 0.48 8.13 -51.93 -0.42 0.06 16 35 H 0.11 0.52 8.04 -51.93 -0.42 0.10 16 36 H 0.12 0.79 8.04 -51.93 -0.42 0.37 16 37 H 0.05 1.31 7.20 -51.93 -0.37 0.94 16 38 H 0.05 1.05 6.46 -51.92 -0.34 0.71 16 39 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 343.16 15.07 5.17 5.17 Total: -1.00 -35.78 343.16 -6.75 -42.53 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -3.96 Total: -0.60 kcal Atomic # 6 Polarization: 14.16 SS G_CDS: -3.59 Total: 10.57 kcal Atomic # 7 Polarization: -54.43 SS G_CDS: 0.04 Total: -54.38 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: 0.18 Total: -16.05 kcal Atomic # 9 Polarization: -2.66 SS G_CDS: 0.08 Total: -2.59 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -4.67 Total: 15.36 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -35.78 -6.75 -42.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119621045.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.482 kcal (2) G-P(sol) polarization free energy of solvation -35.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds