Wall clock time and date at job start Sat Apr 11 2020 05:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.47392 * 126.81177 * 172.68212 * 3 2 1 5 5 C 1.40850 * 126.47797 * 359.95535 * 4 3 2 6 6 H 1.08009 * 119.99886 * 0.02562 * 5 4 3 7 7 C 1.40011 * 120.00344 * 180.02562 * 5 4 3 8 8 N 1.30805 * 119.99765 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00065 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47126 * 89.99716 * 9 7 5 11 11 H 1.48497 * 109.47046 * 210.00208 * 9 7 5 12 12 H 1.48503 * 109.47016 * 329.99885 * 9 7 5 13 13 N 1.32784 * 107.05255 * 179.97438 * 4 3 2 14 14 N 1.39763 * 109.14054 * 359.77483 * 13 4 3 15 15 C 1.39794 * 125.18794 * 180.24183 * 14 13 4 16 16 C 1.38966 * 120.07973 * 139.26071 * 15 14 13 17 17 C 1.38086 * 119.91351 * 179.72199 * 16 15 14 18 18 C 1.38310 * 120.08360 * 0.57659 * 17 16 15 19 19 C 1.38315 * 120.15590 * 359.70079 * 18 17 16 20 20 C 1.38082 * 120.07794 * 359.97438 * 19 18 17 21 21 C 1.36120 * 109.62932 * 0.37628 * 14 13 4 22 22 N 1.38479 * 126.09967 * 179.88925 * 21 14 13 23 23 C 1.34773 * 120.00321 * 259.98549 * 22 21 14 24 24 O 1.21277 * 119.99928 * 355.75187 * 23 22 21 25 25 C 1.50701 * 119.99698 * 176.02283 * 23 22 21 26 26 H 1.08993 * 115.55314 * 34.14407 * 25 23 22 27 27 C 1.53000 * 117.49437 * 179.81207 * 25 23 22 28 28 C 1.52997 * 117.49984 * 248.46811 * 25 23 22 29 29 H 1.08999 * 117.49765 * 0.02562 * 28 25 23 30 30 F 1.39903 * 117.50018 * 145.02245 * 28 25 23 31 31 H 0.97002 * 119.99714 * 179.97438 * 8 7 5 32 32 H 1.07994 * 120.04584 * 0.02769 * 16 15 14 33 33 H 1.08002 * 119.95366 * 180.31971 * 17 16 15 34 34 H 1.07995 * 119.92285 * 179.71809 * 18 17 16 35 35 H 1.07990 * 119.95960 * 180.02562 * 19 18 17 36 36 H 1.07996 * 120.03757 * 180.02562 * 20 19 18 37 37 H 0.97003 * 119.99572 * 79.98381 * 22 21 14 38 38 H 1.09007 * 117.49923 * 214.98332 * 27 25 23 39 39 H 1.08995 * 117.50167 * 359.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.4506 1.1715 -0.1503 5 6 3.0451 2.5092 -0.3230 6 1 1.9938 2.7549 -0.3550 7 6 4.0046 3.5205 -0.4532 8 7 5.2777 3.2229 -0.4140 9 14 3.4666 5.2947 -0.6816 10 1 3.3241 5.9435 0.6465 11 1 4.4851 6.0218 -1.4811 12 1 2.1629 5.3291 -1.3918 13 7 4.7005 0.7268 -0.0926 14 7 4.6860 -0.6586 0.0910 15 6 5.8201 -1.4684 0.2020 16 6 5.8498 -2.5018 1.1307 17 6 6.9696 -3.3032 1.2336 18 6 8.0653 -3.0710 0.4220 19 6 8.0414 -2.0397 -0.4994 20 6 6.9225 -1.2385 -0.6124 21 6 3.3993 -1.0997 0.1421 22 7 2.9930 -2.4126 0.3116 23 6 2.6070 -3.1416 -0.7543 24 8 2.5417 -2.6259 -1.8500 25 6 2.2507 -4.5959 -0.5833 26 1 1.7721 -4.8548 0.3611 27 6 1.8158 -5.3679 -1.8306 28 6 3.1887 -5.6311 -1.2071 29 1 4.0639 -5.2603 -1.7407 30 9 3.3663 -6.8378 -0.5218 31 1 5.9425 3.9235 -0.5046 32 1 4.9964 -2.6810 1.7677 33 1 6.9914 -4.1097 1.9515 34 1 8.9415 -3.6965 0.5078 35 1 8.8985 -1.8615 -1.1317 36 1 6.9043 -0.4337 -1.3324 37 1 2.9862 -2.8077 1.1975 38 1 1.0514 -6.1350 -1.7067 39 1 1.7871 -4.8239 -2.7747 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143431537.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:26 Heat of formation + Delta-G solvation = 58.272788 kcal Electronic energy + Delta-G solvation = -28592.670369 eV Core-core repulsion = 24416.710185 eV Total energy + Delta-G solvation = -4175.960184 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.108 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.74535 -42.23251 -40.75454 -39.61483 -37.25639 -36.93471 -36.27046 -35.42012 -33.76619 -31.91866 -30.46184 -30.14413 -27.85970 -26.24382 -24.20015 -23.61251 -23.46515 -22.42743 -21.85391 -21.55671 -19.86255 -19.16496 -18.63723 -18.02254 -17.41624 -17.08196 -17.02406 -16.67963 -16.31337 -16.02671 -15.78556 -15.56588 -15.15103 -15.05878 -14.94917 -14.67347 -14.35980 -14.22099 -13.96440 -13.70610 -13.63165 -13.45180 -13.21345 -12.98592 -12.92017 -12.82586 -12.48015 -12.07165 -11.94863 -11.67536 -11.62371 -11.47107 -11.33838 -11.13672 -10.56548 -10.33415 -9.93336 -9.65036 -9.01505 -8.56252 -6.64844 -0.10287 0.41662 0.76574 0.99735 1.32666 1.40969 1.41583 1.55159 1.79124 1.90903 2.11137 2.25063 2.47183 2.57720 2.82029 2.97526 3.35991 3.37357 3.45939 3.49641 3.89052 3.91576 3.93836 4.01653 4.25940 4.35535 4.49679 4.55563 4.59708 4.63924 4.75094 4.81764 4.92504 5.01447 5.08062 5.14922 5.31346 5.45542 5.53481 5.56901 5.93289 6.07211 6.14081 6.47214 6.57403 6.72255 6.83872 6.95087 7.51891 8.40161 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.010788 B = 0.004322 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2594.846235 B = 6476.556097 C = 8538.987893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C 0.328 3.672 3 C -0.244 4.244 4 C 0.232 3.768 5 C -0.461 4.461 6 H 0.082 0.918 7 C 0.035 3.965 8 N -0.786 5.786 9 Si 0.987 3.013 10 H -0.259 1.259 11 H -0.264 1.264 12 H -0.262 1.262 13 N -0.339 5.339 14 N -0.335 5.335 15 C 0.132 3.868 16 C -0.141 4.141 17 C -0.091 4.091 18 C -0.121 4.121 19 C -0.101 4.101 20 C -0.135 4.135 21 C 0.354 3.646 22 N -0.644 5.644 23 C 0.549 3.451 24 O -0.554 6.554 25 C -0.202 4.202 26 H 0.170 0.830 27 C -0.147 4.147 28 C 0.062 3.938 29 H 0.141 0.859 30 F -0.177 7.177 31 H 0.286 0.714 32 H 0.134 0.866 33 H 0.168 0.832 34 H 0.164 0.836 35 H 0.148 0.852 36 H 0.098 0.902 37 H 0.431 0.569 38 H 0.144 0.856 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.758 -18.124 3.285 19.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.177 5.177 2 C 0.017 3.983 3 C -0.263 4.263 4 C 0.080 3.920 5 C -0.499 4.499 6 H 0.101 0.899 7 C -0.185 4.185 8 N -0.412 5.412 9 Si 0.808 3.192 10 H -0.183 1.183 11 H -0.189 1.189 12 H -0.186 1.186 13 N -0.168 5.168 14 N -0.108 5.108 15 C 0.040 3.960 16 C -0.161 4.161 17 C -0.109 4.109 18 C -0.139 4.139 19 C -0.120 4.120 20 C -0.155 4.155 21 C 0.130 3.870 22 N -0.300 5.300 23 C 0.337 3.663 24 O -0.429 6.429 25 C -0.223 4.223 26 H 0.187 0.813 27 C -0.185 4.185 28 C 0.026 3.974 29 H 0.159 0.841 30 F -0.157 7.157 31 H 0.097 0.903 32 H 0.152 0.848 33 H 0.186 0.814 34 H 0.182 0.818 35 H 0.166 0.834 36 H 0.117 0.883 37 H 0.274 0.726 38 H 0.162 0.838 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 5.501 -17.521 2.479 18.531 hybrid contribution -0.746 1.083 0.231 1.335 sum 4.755 -16.439 2.710 17.326 Atomic orbital electron populations 1.81025 1.11863 1.09570 1.15225 1.24528 0.91302 0.91710 0.90793 1.17081 0.85042 0.94576 1.29643 1.20560 0.87530 0.92475 0.91458 1.18932 0.94852 0.89122 1.47042 0.89938 1.26745 0.94159 1.05425 0.92157 1.69941 1.01965 1.36620 1.32662 0.85114 0.79125 0.75505 0.79498 1.18338 1.18861 1.18648 1.79025 1.17218 0.81928 1.38643 1.46697 1.01895 1.07664 1.54524 1.17987 0.86587 0.92968 0.98425 1.21221 1.01282 0.96272 0.97356 1.21396 0.91368 0.98854 0.99288 1.21625 0.99730 0.97486 0.95073 1.21325 0.96706 0.94716 0.99241 1.21102 0.94336 1.00776 0.99271 1.17523 0.84650 0.84365 1.00443 1.42492 1.66758 1.08372 1.12338 1.20409 0.74714 0.88216 0.82921 1.90786 1.51928 1.73127 1.27072 1.22925 1.08063 0.87241 1.04066 0.81299 1.23859 0.97329 1.01064 0.96199 1.22007 0.97081 0.81278 0.97075 0.84133 1.92843 1.96510 1.45477 1.80846 0.90316 0.84837 0.81433 0.81824 0.83389 0.88326 0.72633 0.83842 0.86974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -23.89 18.54 19.00 0.35 -23.54 16 2 C 0.33 15.92 15.67 88.33 1.38 17.30 16 3 C -0.24 -12.09 6.20 -19.53 -0.12 -12.21 16 4 C 0.23 12.92 6.94 42.05 0.29 13.21 16 5 C -0.46 -25.63 9.26 23.34 0.22 -25.42 16 6 H 0.08 4.50 7.85 -2.91 -0.02 4.47 16 7 C 0.04 1.81 5.50 85.28 0.47 2.28 16 8 N -0.79 -42.26 11.95 21.84 0.26 -41.99 16 9 Si 0.99 39.31 29.56 68.60 2.03 41.34 16 10 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 11 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 12 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 13 N -0.34 -18.52 10.53 -48.34 -0.51 -19.03 16 14 N -0.34 -15.12 3.69 -183.61 -0.68 -15.80 16 15 C 0.13 4.88 6.26 38.22 0.24 5.12 16 16 C -0.14 -3.72 9.09 22.41 0.20 -3.52 16 17 C -0.09 -1.71 10.04 22.25 0.22 -1.49 16 18 C -0.12 -2.24 10.04 22.31 0.22 -2.02 16 19 C -0.10 -2.52 10.04 22.25 0.22 -2.30 16 20 C -0.13 -4.80 9.80 22.41 0.22 -4.58 16 21 C 0.35 14.95 6.19 131.97 0.82 15.76 16 22 N -0.64 -19.68 4.21 -306.85 -1.29 -20.97 16 23 C 0.55 16.76 7.57 87.66 0.66 17.42 16 24 O -0.55 -22.79 16.23 -3.02 -0.05 -22.84 16 25 C -0.20 -3.84 6.17 -11.54 -0.07 -3.91 16 26 H 0.17 2.17 8.14 -2.39 -0.02 2.15 16 27 C -0.15 -2.49 10.03 30.62 0.31 -2.18 16 28 C 0.06 1.05 7.60 30.62 0.23 1.28 16 29 H 0.14 2.39 8.14 -2.39 -0.02 2.37 16 30 F -0.18 -3.07 17.60 44.97 0.79 -2.28 16 31 H 0.29 13.91 8.30 -92.71 -0.77 13.14 16 32 H 0.13 3.00 6.65 -2.91 -0.02 2.98 16 33 H 0.17 1.79 8.06 -2.91 -0.02 1.77 16 34 H 0.16 1.74 8.06 -2.91 -0.02 1.72 16 35 H 0.15 2.89 8.06 -2.92 -0.02 2.86 16 36 H 0.10 4.14 8.06 -2.91 -0.02 4.12 16 37 H 0.43 9.22 7.96 -92.71 -0.74 8.48 16 38 H 0.14 1.67 8.14 -2.38 -0.02 1.65 16 39 H 0.11 2.29 7.67 -2.39 -0.02 2.27 16 Total: -1.00 -77.24 365.09 6.83 -70.42 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: 0.40 Total: 19.94 kcal Atomic # 6 Polarization: 9.24 SS G_CDS: 5.52 Total: 14.76 kcal Atomic # 7 Polarization: -119.47 SS G_CDS: -1.87 Total: -121.33 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: -0.05 Total: -22.84 kcal Atomic # 9 Polarization: -3.07 SS G_CDS: 0.79 Total: -2.28 kcal Atomic # 14 Polarization: 39.31 SS G_CDS: 2.03 Total: 41.34 kcal Total: -77.24 6.83 -70.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143431537.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.691 kcal (2) G-P(sol) polarization free energy of solvation -77.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds