Wall clock time and date at job start Sat Apr 11 2020 05:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31382 * 1 3 3 Si 1.86800 * 120.00018 * 2 1 4 4 H 1.48502 * 109.47215 * 239.99883 * 3 2 1 5 5 H 1.48497 * 109.47459 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47176 * 120.00299 * 3 2 1 7 7 C 1.39024 * 120.00027 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99906 * 162.57236 * 7 2 1 9 9 N 1.36905 * 119.99837 * 342.57273 * 7 2 1 10 10 C 1.46509 * 120.00103 * 318.83549 * 9 7 2 11 11 C 1.50697 * 109.47079 * 264.51697 * 10 9 7 12 12 C 1.38232 * 120.00030 * 268.76145 * 11 10 9 13 13 C 1.38237 * 119.99780 * 179.76876 * 12 11 10 14 14 C 1.38239 * 119.99901 * 0.48409 * 13 12 11 15 15 C 1.38226 * 120.00036 * 359.79111 * 14 13 12 16 16 C 1.38234 * 119.99709 * 89.03758 * 11 10 9 17 17 C 1.34778 * 120.00369 * 138.83923 * 9 7 2 18 18 O 1.21610 * 120.00332 * 184.95449 * 17 9 7 19 19 C 1.47501 * 119.99593 * 4.95493 * 17 9 7 20 20 C 1.39035 * 119.88972 * 317.25730 * 19 17 9 21 21 C 1.39695 * 119.58345 * 180.02562 * 20 19 17 22 22 N 1.35469 * 133.00749 * 179.97438 * 21 20 19 23 23 N 1.28645 * 110.13574 * 179.24284 * 22 21 20 24 24 N 1.40225 * 109.53071 * 0.70220 * 23 22 21 25 25 H 0.97001 * 126.65941 * 179.43131 * 24 23 22 26 26 C 1.37314 * 106.68886 * 359.40853 * 24 23 22 27 27 C 1.39193 * 133.67453 * 180.02562 * 26 24 23 28 28 C 1.36568 * 120.13723 * 179.71640 * 27 26 24 29 29 F 1.35101 * 119.80899 * 180.22843 * 28 27 26 30 30 H 0.97004 * 119.99721 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.46929 * 24.51648 * 10 9 7 32 32 H 1.08999 * 109.46681 * 144.51410 * 10 9 7 33 33 H 1.07999 * 119.99864 * 0.02562 * 12 11 10 34 34 H 1.07999 * 120.00103 * 180.24975 * 13 12 11 35 35 H 1.08001 * 119.99396 * 179.76966 * 14 13 12 36 36 H 1.08003 * 120.00043 * 179.97438 * 15 14 13 37 37 H 1.07999 * 120.00580 * 359.97438 * 16 11 10 38 38 H 1.08000 * 120.21125 * 359.97438 * 20 19 17 39 39 H 1.07998 * 119.93137 * 359.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2478 1.6177 0.0000 4 1 3.1016 1.6964 -1.2125 5 1 1.2829 2.7465 0.0006 6 1 3.1017 1.6964 1.2125 7 6 2.0089 -1.2040 -0.0005 8 1 3.0517 -1.2253 -0.2807 9 7 1.3715 -2.3625 0.3540 10 6 0.4388 -2.3693 1.4839 11 6 1.1598 -2.8210 2.7277 12 6 1.1800 -4.1609 3.0668 13 6 1.8454 -4.5758 4.2052 14 6 2.4822 -3.6495 5.0099 15 6 2.4571 -2.3090 4.6739 16 6 1.7961 -1.8947 3.5326 17 6 1.6020 -3.4970 -0.3362 18 8 0.9699 -4.5038 -0.0799 19 6 2.6210 -3.5173 -1.4024 20 6 2.7098 -2.4561 -2.2963 21 6 3.6769 -2.4823 -3.3040 22 7 3.9998 -1.6198 -4.2975 23 7 4.9906 -2.0786 -4.9777 24 7 5.3790 -3.3223 -4.4595 25 1 6.0940 -3.8892 -4.7888 26 6 4.5514 -3.5819 -3.3950 27 6 4.4454 -4.6386 -2.4952 28 6 3.4986 -4.6091 -1.5114 29 9 3.4046 -5.6361 -0.6387 30 1 -0.4850 0.8401 0.0004 31 1 0.0458 -1.3641 1.6365 32 1 -0.3835 -3.0527 1.2720 33 1 0.6794 -4.8841 2.4400 34 1 1.8647 -5.6232 4.4680 35 1 2.9989 -3.9733 5.9013 36 1 2.9543 -1.5852 5.3028 37 1 1.7769 -0.8473 3.2699 38 1 2.0348 -1.6172 -2.2126 39 1 5.1160 -5.4816 -2.5725 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156079519.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:48 Heat of formation + Delta-G solvation = 68.336772 kcal Electronic energy + Delta-G solvation = -29222.836225 eV Core-core repulsion = 25047.312447 eV Total energy + Delta-G solvation = -4175.523777 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.108 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.67667 -41.90441 -39.30560 -38.23847 -36.53310 -35.00516 -33.54271 -32.04290 -31.15043 -30.31033 -29.89857 -29.68208 -25.95839 -25.07521 -23.86870 -23.00955 -22.18849 -21.94933 -20.84261 -19.58741 -18.37293 -18.24910 -17.17297 -16.56961 -16.05302 -15.85741 -15.53822 -15.08146 -14.98935 -14.83727 -14.56032 -14.30317 -14.05309 -13.89584 -13.60411 -13.24515 -12.85824 -12.78013 -12.29831 -12.12042 -12.01984 -11.89525 -11.54618 -11.38387 -11.34470 -11.10044 -11.02058 -10.88217 -10.73214 -10.51552 -10.40742 -10.22915 -9.32703 -8.81376 -8.51025 -8.35544 -8.24524 -8.15590 -7.67204 -6.55809 -4.28551 0.55687 1.19100 1.89672 1.97306 2.23165 2.39329 3.07320 3.15541 3.17692 3.40260 3.94255 3.97951 4.11870 4.29408 4.48957 4.57290 4.73508 4.83790 4.91372 5.16651 5.40091 5.41990 5.44800 5.55424 5.66035 5.82254 5.96858 6.07019 6.13548 6.17047 6.30031 6.42066 6.52186 6.57723 6.71038 6.81038 6.93525 7.00458 7.01610 7.06993 7.26538 7.38744 7.58841 7.74288 8.04036 8.17092 8.86657 9.24435 9.69440 10.46196 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.010256 B = 0.005130 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2729.539998 B = 5457.118105 C = 7209.965983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.053 3.947 3 Si 0.906 3.094 4 H -0.265 1.265 5 H -0.281 1.281 6 H -0.271 1.271 7 C -0.351 4.351 8 H 0.090 0.910 9 N -0.418 5.418 10 C 0.153 3.847 11 C -0.083 4.083 12 C -0.101 4.101 13 C -0.132 4.132 14 C -0.133 4.133 15 C -0.133 4.133 16 C -0.097 4.097 17 C 0.518 3.482 18 O -0.583 6.583 19 C -0.147 4.147 20 C 0.061 3.939 21 C -0.042 4.042 22 N -0.193 5.193 23 N -0.016 5.016 24 N -0.505 5.505 25 H 0.445 0.555 26 C 0.126 3.874 27 C -0.196 4.196 28 C 0.202 3.798 29 F -0.115 7.115 30 H 0.275 0.725 31 H 0.111 0.889 32 H 0.068 0.932 33 H 0.126 0.874 34 H 0.113 0.887 35 H 0.111 0.889 36 H 0.113 0.887 37 H 0.121 0.879 38 H 0.178 0.822 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.312 -4.826 0.166 8.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.155 4.155 3 Si 0.731 3.269 4 H -0.190 1.190 5 H -0.206 1.206 6 H -0.196 1.196 7 C -0.478 4.478 8 H 0.108 0.892 9 N -0.134 5.134 10 C 0.030 3.970 11 C -0.085 4.085 12 C -0.119 4.119 13 C -0.150 4.150 14 C -0.151 4.151 15 C -0.151 4.151 16 C -0.115 4.115 17 C 0.307 3.693 18 O -0.468 6.468 19 C -0.154 4.154 20 C 0.039 3.961 21 C -0.166 4.166 22 N -0.074 5.074 23 N 0.002 4.998 24 N -0.227 5.227 25 H 0.291 0.709 26 C 0.003 3.997 27 C -0.220 4.220 28 C 0.178 3.822 29 F -0.093 7.093 30 H 0.085 0.915 31 H 0.129 0.871 32 H 0.086 0.914 33 H 0.144 0.856 34 H 0.131 0.869 35 H 0.129 0.871 36 H 0.131 0.869 37 H 0.139 0.861 38 H 0.195 0.805 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 6.993 -4.057 -0.727 8.117 hybrid contribution 1.028 -0.404 0.664 1.288 sum 8.021 -4.461 -0.063 9.178 Atomic orbital electron populations 1.69880 1.06160 1.28491 1.44008 1.25370 0.95117 0.99696 0.95353 0.86301 0.79687 0.81121 0.79756 1.18987 1.20595 1.19570 1.19382 0.95153 0.84371 1.48943 0.89243 1.43166 1.38975 1.07298 1.23962 1.20374 0.90842 1.03812 0.81934 1.20608 0.98079 0.93195 0.96576 1.21299 0.98619 0.95937 0.96085 1.21063 0.99197 0.98893 0.95849 1.20983 1.00845 0.93558 0.99751 1.21047 1.00625 0.95691 0.97723 1.21119 0.96629 0.99869 0.93931 1.17794 0.84418 0.85105 0.82028 1.90661 1.51609 1.34731 1.69752 1.19916 1.00250 0.94427 1.00836 1.21182 0.92451 0.96431 0.86068 1.19969 1.02685 0.93375 1.00524 1.74842 1.06164 1.23091 1.03316 1.81533 1.08799 0.92192 1.17282 1.47573 1.30817 1.19058 1.25267 0.70898 1.18904 0.93167 0.96741 0.90884 1.19229 1.04493 1.00262 0.98000 1.17039 0.93545 0.84379 0.87234 1.91570 1.95006 1.55982 1.66728 0.91453 0.87101 0.91407 0.85608 0.86933 0.87118 0.86923 0.86112 0.80481 0.83935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -20.30 11.56 55.50 0.64 -19.66 16 2 C 0.05 1.20 4.97 -17.45 -0.09 1.12 16 3 Si 0.91 18.21 29.59 -169.99 -5.03 13.18 16 4 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 5 H -0.28 -5.67 7.11 56.52 0.40 -5.26 16 6 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 7 C -0.35 -8.02 6.40 -14.99 -0.10 -8.11 16 8 H 0.09 2.03 6.63 -52.49 -0.35 1.68 16 9 N -0.42 -9.64 2.49 -117.29 -0.29 -9.93 16 10 C 0.15 3.39 5.04 -5.19 -0.03 3.37 16 11 C -0.08 -1.68 5.42 -104.63 -0.57 -2.24 16 12 C -0.10 -1.92 9.53 -39.58 -0.38 -2.30 16 13 C -0.13 -2.17 10.05 -39.58 -0.40 -2.57 16 14 C -0.13 -2.05 10.05 -39.59 -0.40 -2.45 16 15 C -0.13 -2.15 10.05 -39.59 -0.40 -2.55 16 16 C -0.10 -1.80 9.71 -39.58 -0.38 -2.19 16 17 C 0.52 11.97 7.04 -12.48 -0.09 11.89 16 18 O -0.58 -14.48 15.20 5.27 0.08 -14.40 16 19 C -0.15 -2.96 5.27 -104.98 -0.55 -3.51 16 20 C 0.06 1.17 7.88 -38.74 -0.31 0.87 16 21 C -0.04 -0.74 7.26 -84.75 -0.61 -1.36 16 22 N -0.19 -3.43 12.40 32.15 0.40 -3.03 16 23 N -0.02 -0.25 13.82 60.35 0.83 0.59 16 24 N -0.50 -6.18 7.54 32.39 0.24 -5.94 16 25 H 0.44 3.42 8.96 -182.50 -1.64 1.79 16 26 C 0.13 1.86 7.34 -84.09 -0.62 1.24 16 27 C -0.20 -2.77 9.97 -39.83 -0.40 -3.17 16 28 C 0.20 3.57 7.19 -39.33 -0.28 3.29 16 29 F -0.11 -2.14 16.27 2.25 0.04 -2.11 16 30 H 0.28 6.27 8.31 -40.82 -0.34 5.93 16 31 H 0.11 2.56 5.68 -51.93 -0.29 2.26 16 32 H 0.07 1.55 7.46 -51.93 -0.39 1.17 16 33 H 0.13 2.50 7.43 -52.49 -0.39 2.11 16 34 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 35 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 36 H 0.11 1.53 8.06 -52.48 -0.42 1.11 16 37 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 38 H 0.18 3.65 6.34 -52.49 -0.33 3.32 16 39 H 0.14 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 344.42 15.07 5.19 5.19 Total: -1.00 -27.56 344.42 -8.12 -35.68 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -4.64 Total: 9.12 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: -5.59 Total: -8.68 kcal Atomic # 7 Polarization: -39.80 SS G_CDS: 1.83 Total: -37.97 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: 0.08 Total: -14.40 kcal Atomic # 9 Polarization: -2.14 SS G_CDS: 0.04 Total: -2.11 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -5.03 Total: 13.18 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -27.56 -8.12 -35.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156079519.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.019 kcal (2) G-P(sol) polarization free energy of solvation -27.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds