Wall clock time and date at job start Sat Apr 11 2020 05:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31382 * 1 3 3 Si 1.86800 * 120.00018 * 2 1 4 4 H 1.48502 * 109.47215 * 239.99883 * 3 2 1 5 5 H 1.48497 * 109.47459 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47176 * 120.00299 * 3 2 1 7 7 C 1.39024 * 120.00027 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99906 * 162.57236 * 7 2 1 9 9 N 1.36905 * 119.99837 * 342.57273 * 7 2 1 10 10 C 1.46509 * 120.00103 * 318.83549 * 9 7 2 11 11 C 1.50697 * 109.47079 * 264.51697 * 10 9 7 12 12 C 1.38232 * 120.00030 * 268.76145 * 11 10 9 13 13 C 1.38237 * 119.99780 * 179.76876 * 12 11 10 14 14 C 1.38239 * 119.99901 * 0.48409 * 13 12 11 15 15 C 1.38226 * 120.00036 * 359.79111 * 14 13 12 16 16 C 1.38234 * 119.99709 * 89.03758 * 11 10 9 17 17 C 1.34778 * 120.00369 * 138.83923 * 9 7 2 18 18 O 1.21610 * 120.00332 * 184.95449 * 17 9 7 19 19 C 1.47501 * 119.99593 * 4.95493 * 17 9 7 20 20 C 1.39035 * 119.88972 * 317.25730 * 19 17 9 21 21 C 1.39695 * 119.58345 * 180.02562 * 20 19 17 22 22 N 1.35469 * 133.00749 * 179.97438 * 21 20 19 23 23 N 1.28645 * 110.13574 * 179.24284 * 22 21 20 24 24 N 1.40225 * 109.53071 * 0.70220 * 23 22 21 25 25 H 0.97001 * 126.65941 * 179.43131 * 24 23 22 26 26 C 1.37314 * 106.68886 * 359.40853 * 24 23 22 27 27 C 1.39193 * 133.67453 * 180.02562 * 26 24 23 28 28 C 1.36568 * 120.13723 * 179.71640 * 27 26 24 29 29 F 1.35101 * 119.80899 * 180.22843 * 28 27 26 30 30 H 0.97004 * 119.99721 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.46929 * 24.51648 * 10 9 7 32 32 H 1.08999 * 109.46681 * 144.51410 * 10 9 7 33 33 H 1.07999 * 119.99864 * 0.02562 * 12 11 10 34 34 H 1.07999 * 120.00103 * 180.24975 * 13 12 11 35 35 H 1.08001 * 119.99396 * 179.76966 * 14 13 12 36 36 H 1.08003 * 120.00043 * 179.97438 * 15 14 13 37 37 H 1.07999 * 120.00580 * 359.97438 * 16 11 10 38 38 H 1.08000 * 120.21125 * 359.97438 * 20 19 17 39 39 H 1.07998 * 119.93137 * 359.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2478 1.6177 0.0000 4 1 3.1016 1.6964 -1.2125 5 1 1.2829 2.7465 0.0006 6 1 3.1017 1.6964 1.2125 7 6 2.0089 -1.2040 -0.0005 8 1 3.0517 -1.2253 -0.2807 9 7 1.3715 -2.3625 0.3540 10 6 0.4388 -2.3693 1.4839 11 6 1.1598 -2.8210 2.7277 12 6 1.1800 -4.1609 3.0668 13 6 1.8454 -4.5758 4.2052 14 6 2.4822 -3.6495 5.0099 15 6 2.4571 -2.3090 4.6739 16 6 1.7961 -1.8947 3.5326 17 6 1.6020 -3.4970 -0.3362 18 8 0.9699 -4.5038 -0.0799 19 6 2.6210 -3.5173 -1.4024 20 6 2.7098 -2.4561 -2.2963 21 6 3.6769 -2.4823 -3.3040 22 7 3.9998 -1.6198 -4.2975 23 7 4.9906 -2.0786 -4.9777 24 7 5.3790 -3.3223 -4.4595 25 1 6.0940 -3.8892 -4.7888 26 6 4.5514 -3.5819 -3.3950 27 6 4.4454 -4.6386 -2.4952 28 6 3.4986 -4.6091 -1.5114 29 9 3.4046 -5.6361 -0.6387 30 1 -0.4850 0.8401 0.0004 31 1 0.0458 -1.3641 1.6365 32 1 -0.3835 -3.0527 1.2720 33 1 0.6794 -4.8841 2.4400 34 1 1.8647 -5.6232 4.4680 35 1 2.9989 -3.9733 5.9013 36 1 2.9543 -1.5852 5.3028 37 1 1.7769 -0.8473 3.2699 38 1 2.0348 -1.6172 -2.2126 39 1 5.1160 -5.4816 -2.5725 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156079519.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:47 Heat of formation + Delta-G solvation = 52.928676 kcal Electronic energy + Delta-G solvation = -29223.504370 eV Core-core repulsion = 25047.312447 eV Total energy + Delta-G solvation = -4176.191922 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.108 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.06118 -43.19066 -40.94925 -39.68520 -37.95959 -36.79736 -34.81254 -33.75948 -32.67952 -31.68026 -31.23593 -31.07189 -27.61561 -26.76514 -25.25799 -24.36932 -23.50334 -23.32731 -22.27465 -21.25490 -19.83538 -19.64078 -18.62195 -18.09855 -17.46551 -17.28133 -16.99461 -16.68228 -16.45235 -16.35881 -16.04041 -15.75148 -15.55671 -15.36216 -15.06505 -14.64608 -14.44335 -14.19662 -13.83702 -13.61175 -13.37411 -13.26134 -13.18961 -13.00411 -12.74331 -12.69091 -12.53284 -12.35383 -12.14571 -12.03484 -11.87227 -11.73194 -11.10969 -10.57406 -9.88716 -9.73042 -9.58560 -9.56796 -9.46527 -8.34018 -6.11227 -0.75019 -0.21017 0.50905 0.59190 0.95219 1.27176 1.43961 1.48639 1.55287 1.85969 2.28326 2.42237 2.71115 2.88324 3.01507 3.13633 3.20203 3.39476 3.58885 3.85600 4.04404 4.11256 4.16675 4.25467 4.27248 4.38711 4.50926 4.59582 4.74881 4.80824 4.85250 4.92220 5.08038 5.15628 5.23719 5.28866 5.39214 5.45939 5.66170 5.67095 5.87803 5.98915 5.99699 6.22376 6.36276 6.77267 7.06333 7.45500 7.91282 8.69246 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.010256 B = 0.005130 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2729.539998 B = 5457.118105 C = 7209.965983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.022 3.978 3 Si 0.962 3.038 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.351 4.351 8 H 0.090 0.910 9 N -0.425 5.425 10 C 0.160 3.840 11 C -0.105 4.105 12 C -0.120 4.120 13 C -0.129 4.129 14 C -0.122 4.122 15 C -0.127 4.127 16 C -0.112 4.112 17 C 0.506 3.494 18 O -0.613 6.613 19 C -0.165 4.165 20 C 0.052 3.948 21 C -0.053 4.053 22 N -0.226 5.226 23 N -0.007 5.007 24 N -0.468 5.468 25 H 0.469 0.531 26 C 0.134 3.866 27 C -0.152 4.152 28 C 0.180 3.820 29 F -0.124 7.124 30 H 0.276 0.724 31 H 0.096 0.904 32 H 0.043 0.957 33 H 0.105 0.895 34 H 0.141 0.859 35 H 0.153 0.847 36 H 0.146 0.854 37 H 0.112 0.888 38 H 0.152 0.848 39 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.927 -5.645 0.572 12.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.183 4.183 3 Si 0.786 3.214 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.479 4.479 8 H 0.107 0.893 9 N -0.141 5.141 10 C 0.037 3.963 11 C -0.106 4.106 12 C -0.138 4.138 13 C -0.147 4.147 14 C -0.140 4.140 15 C -0.144 4.144 16 C -0.131 4.131 17 C 0.295 3.705 18 O -0.500 6.500 19 C -0.172 4.172 20 C 0.029 3.971 21 C -0.176 4.176 22 N -0.106 5.106 23 N 0.011 4.989 24 N -0.195 5.195 25 H 0.321 0.679 26 C 0.010 3.990 27 C -0.175 4.175 28 C 0.156 3.844 29 F -0.102 7.102 30 H 0.086 0.914 31 H 0.114 0.886 32 H 0.061 0.939 33 H 0.123 0.877 34 H 0.158 0.842 35 H 0.171 0.829 36 H 0.163 0.837 37 H 0.130 0.870 38 H 0.169 0.831 39 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 10.642 -4.881 -0.338 11.713 hybrid contribution -0.025 -0.221 0.458 0.509 sum 10.617 -5.102 0.120 11.779 Atomic orbital electron populations 1.69972 1.07406 1.29063 1.45288 1.25976 0.95543 1.01959 0.94850 0.85450 0.78517 0.77838 0.79644 1.19080 1.20544 1.18929 1.19465 0.95074 0.84468 1.48857 0.89266 1.43369 1.38823 1.07602 1.24261 1.20181 0.90651 1.02197 0.83270 1.20425 0.99610 0.94249 0.96304 1.21221 1.00066 0.95067 0.97495 1.21385 0.97961 1.00778 0.94557 1.21445 0.99432 0.92737 1.00351 1.21411 0.99337 0.97052 0.96637 1.21140 0.97661 0.99158 0.95162 1.18345 0.84934 0.84660 0.82555 1.90614 1.52928 1.35566 1.70896 1.19747 1.00750 0.96199 1.00479 1.20741 0.93215 0.95771 0.87332 1.19936 1.02853 0.94590 1.00243 1.74885 1.07476 1.24091 1.04143 1.81469 1.07842 0.92917 1.16644 1.47514 1.30251 1.18121 1.23602 0.67879 1.18849 0.92793 0.95952 0.91390 1.19506 1.02584 1.00550 0.94881 1.17104 0.94742 0.83840 0.88737 1.91543 1.95226 1.56136 1.67340 0.91436 0.88586 0.93886 0.87716 0.84165 0.82890 0.83669 0.86998 0.83081 0.79026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -44.47 11.56 21.68 0.25 -44.21 16 2 C 0.02 1.04 4.97 84.95 0.42 1.47 16 3 Si 0.96 38.22 29.59 68.60 2.03 40.25 16 4 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 5 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16 6 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 7 C -0.35 -16.88 6.40 84.09 0.54 -16.34 16 8 H 0.09 4.23 6.63 -2.91 -0.02 4.21 16 9 N -0.42 -20.96 2.49 -643.23 -1.60 -22.56 16 10 C 0.16 7.69 5.04 85.63 0.43 8.13 16 11 C -0.10 -4.44 5.42 -19.87 -0.11 -4.54 16 12 C -0.12 -4.73 9.53 22.27 0.21 -4.52 16 13 C -0.13 -4.04 10.05 22.27 0.22 -3.82 16 14 C -0.12 -3.34 10.05 22.27 0.22 -3.11 16 15 C -0.13 -3.80 10.05 22.27 0.22 -3.58 16 16 C -0.11 -4.24 9.71 22.27 0.22 -4.03 16 17 C 0.51 24.87 7.04 86.69 0.61 25.48 16 18 O -0.61 -32.61 15.20 -4.06 -0.06 -32.67 16 19 C -0.16 -6.85 5.27 -20.09 -0.11 -6.96 16 20 C 0.05 2.08 7.88 22.81 0.18 2.26 16 21 C -0.05 -1.82 7.26 39.56 0.29 -1.54 16 22 N -0.23 -7.76 12.40 -52.19 -0.65 -8.41 16 23 N -0.01 -0.18 13.82 37.02 0.51 0.33 16 24 N -0.47 -9.57 7.54 -51.45 -0.39 -9.95 16 25 H 0.47 4.75 8.96 -213.24 -1.91 2.83 16 26 C 0.13 3.55 7.34 39.14 0.29 3.84 16 27 C -0.15 -3.78 9.97 22.11 0.22 -3.56 16 28 C 0.18 6.22 7.19 22.43 0.16 6.38 16 29 F -0.12 -4.60 16.27 44.97 0.73 -3.87 16 30 H 0.28 13.20 8.31 -92.71 -0.77 12.43 16 31 H 0.10 4.82 5.68 -2.39 -0.01 4.81 16 32 H 0.04 2.19 7.46 -2.39 -0.02 2.17 16 33 H 0.10 4.50 7.43 -2.91 -0.02 4.48 16 34 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 35 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 36 H 0.15 3.39 8.06 -2.91 -0.02 3.37 16 37 H 0.11 4.32 8.06 -2.91 -0.02 4.29 16 38 H 0.15 6.71 6.34 -2.91 -0.02 6.69 16 39 H 0.19 2.90 8.06 -2.91 -0.02 2.88 16 Total: -1.00 -64.65 344.42 4.08 -60.57 By element: Atomic # 1 Polarization: 25.75 SS G_CDS: -0.77 Total: 24.98 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: 4.02 Total: -4.44 kcal Atomic # 7 Polarization: -82.94 SS G_CDS: -1.87 Total: -84.82 kcal Atomic # 8 Polarization: -32.61 SS G_CDS: -0.06 Total: -32.67 kcal Atomic # 9 Polarization: -4.60 SS G_CDS: 0.73 Total: -3.87 kcal Atomic # 14 Polarization: 38.22 SS G_CDS: 2.03 Total: 40.25 kcal Total: -64.65 4.08 -60.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156079519.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.500 kcal (2) G-P(sol) polarization free energy of solvation -64.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds