Wall clock time and date at job start Sat Apr 11 2020 05:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31390 * 1 3 3 Si 1.86801 * 120.00107 * 2 1 4 4 H 1.48502 * 109.47395 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46759 * 299.99622 * 3 2 1 6 6 H 1.48495 * 109.47257 * 59.99591 * 3 2 1 7 7 C 1.39002 * 119.99901 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99810 * 170.62854 * 7 2 1 9 9 N 1.36831 * 120.00416 * 350.63178 * 7 2 1 10 10 C 1.46504 * 119.99786 * 317.55942 * 9 7 2 11 11 C 1.50691 * 109.47180 * 269.99690 * 10 9 7 12 12 C 1.38241 * 119.99901 * 269.72602 * 11 10 9 13 13 C 1.38244 * 119.99448 * 179.76608 * 12 11 10 14 14 C 1.38228 * 120.00209 * 0.50765 * 13 12 11 15 15 C 1.38237 * 120.00017 * 359.74487 * 14 13 12 16 16 C 1.38232 * 120.00242 * 89.99795 * 11 10 9 17 17 C 1.34780 * 120.00256 * 137.55380 * 9 7 2 18 18 O 1.21784 * 119.99883 * 184.86663 * 17 9 7 19 19 C 1.46351 * 119.99802 * 4.87199 * 17 9 7 20 20 N 1.32416 * 126.42340 * 356.80282 * 19 17 9 21 21 N 1.28650 * 109.98744 * 179.75207 * 20 19 17 22 22 C 1.33106 * 109.75777 * 0.23314 * 21 20 19 23 23 C 1.40575 * 133.11114 * 180.02562 * 22 21 20 24 24 F 1.35103 * 120.39383 * 359.97438 * 23 22 21 25 25 C 1.36618 * 119.21335 * 179.97438 * 23 22 21 26 26 C 1.40141 * 119.59390 * 359.97300 * 25 23 22 27 27 C 1.35351 * 120.22891 * 0.02562 * 26 25 23 28 28 N 1.35820 * 120.59191 * 0.02562 * 27 26 25 29 29 H 0.97004 * 120.00222 * 5.01467 * 1 2 3 30 30 H 1.09003 * 109.46823 * 29.99943 * 10 9 7 31 31 H 1.09003 * 109.47072 * 149.99337 * 10 9 7 32 32 H 1.07994 * 120.00291 * 359.97438 * 12 11 10 33 33 H 1.08000 * 119.99614 * 180.23429 * 13 12 11 34 34 H 1.08002 * 119.99746 * 179.72760 * 14 13 12 35 35 H 1.08004 * 120.00084 * 179.97438 * 15 14 13 36 36 H 1.08003 * 119.99794 * 0.02562 * 16 11 10 37 37 H 1.07997 * 120.20656 * 179.97438 * 25 23 22 38 38 H 1.07996 * 119.88774 * 180.02562 * 26 25 23 39 39 H 1.08000 * 119.70551 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2479 1.6177 0.0000 4 1 3.7080 1.3464 0.0006 5 1 1.8892 2.3963 -1.2126 6 1 1.8892 2.3965 1.2124 7 6 2.0089 -1.2038 0.0005 8 1 3.0781 -1.2101 -0.1518 9 7 1.3385 -2.3808 0.1939 10 6 0.2948 -2.4696 1.2183 11 6 0.9095 -2.8968 2.5260 12 6 1.0014 -4.2399 2.8405 13 6 1.5697 -4.6319 4.0382 14 6 2.0366 -3.6807 4.9258 15 6 1.9400 -2.3376 4.6136 16 6 1.3765 -1.9457 3.4137 17 6 1.6382 -3.4586 -0.5579 18 8 0.9828 -4.4791 -0.4478 19 6 2.7512 -3.4023 -1.5065 20 7 3.5061 -2.3471 -1.7713 21 7 4.3942 -2.6513 -2.6509 22 6 4.2563 -3.9263 -3.0073 23 6 4.9480 -4.7514 -3.9111 24 9 5.9862 -4.2638 -4.6249 25 6 4.5579 -6.0524 -4.0591 26 6 3.4791 -6.5409 -3.3098 27 6 2.8269 -5.7292 -2.4450 28 7 3.2069 -4.4342 -2.2921 29 1 -0.4851 0.8368 -0.0734 30 1 -0.1783 -1.4952 1.3402 31 1 -0.4533 -3.2009 0.9123 32 1 0.6322 -4.9828 2.1492 33 1 1.6449 -5.6813 4.2822 34 1 2.4766 -3.9870 5.8634 35 1 2.3044 -1.5943 5.3073 36 1 1.3004 -0.8962 3.1702 37 1 5.0777 -6.7003 -4.7492 38 1 3.1670 -7.5686 -3.4227 39 1 1.9969 -6.1146 -1.8715 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156332624.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:51 Heat of formation + Delta-G solvation = 77.113774 kcal Electronic energy + Delta-G solvation = -29035.809646 eV Core-core repulsion = 24860.666468 eV Total energy + Delta-G solvation = -4175.143178 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.108 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.00898 -43.11318 -39.19769 -38.10976 -37.84421 -35.17354 -33.32602 -32.01471 -31.43940 -30.63898 -30.36523 -29.08690 -26.11475 -25.14329 -24.09670 -23.46954 -22.66697 -22.00201 -20.92357 -19.74443 -18.57791 -17.82803 -17.21796 -16.83494 -16.63833 -16.21248 -15.61830 -15.44287 -15.26648 -14.85109 -14.73060 -14.47560 -14.35731 -14.10066 -13.70423 -13.12785 -12.89319 -12.69779 -12.45416 -12.23978 -12.22121 -12.11008 -11.72416 -11.54229 -11.25875 -10.99663 -10.87238 -10.70964 -10.53443 -10.38812 -10.28314 -10.07468 -9.40683 -9.35619 -8.98499 -8.40893 -8.23089 -7.94096 -7.65195 -6.51709 -4.23123 0.53836 0.94394 1.82092 1.91943 2.31564 2.58530 3.13712 3.22340 3.25675 3.31205 3.83004 3.98265 4.04130 4.16177 4.25390 4.48239 4.60405 4.77012 4.86836 5.02671 5.35557 5.38377 5.40835 5.47653 5.50937 5.64687 5.74474 5.79007 5.95445 6.03212 6.08953 6.15879 6.32772 6.44556 6.51408 6.64539 6.95298 6.95783 6.97364 7.05312 7.32593 7.48392 7.54172 7.64931 8.31342 8.70079 8.92122 9.13551 9.54586 10.49283 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.010377 B = 0.004605 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2697.630957 B = 6078.604095 C = 7756.949001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.049 3.951 3 Si 0.923 3.077 4 H -0.260 1.260 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.319 4.319 8 H 0.121 0.879 9 N -0.384 5.384 10 C 0.140 3.860 11 C -0.082 4.082 12 C -0.105 4.105 13 C -0.133 4.133 14 C -0.131 4.131 15 C -0.131 4.131 16 C -0.092 4.092 17 C 0.533 3.467 18 O -0.605 6.605 19 C 0.150 3.850 20 N -0.176 5.176 21 N -0.282 5.282 22 C 0.149 3.851 23 C 0.135 3.865 24 F -0.113 7.113 25 C -0.123 4.123 26 C -0.143 4.143 27 C 0.090 3.910 28 N -0.356 5.356 29 H 0.275 0.725 30 H 0.130 0.870 31 H 0.071 0.929 32 H 0.123 0.877 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.115 0.885 36 H 0.124 0.876 37 H 0.155 0.845 38 H 0.163 0.837 39 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.727 -10.237 0.123 10.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.158 4.158 3 Si 0.748 3.252 4 H -0.184 1.184 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.449 4.449 8 H 0.138 0.862 9 N -0.098 5.098 10 C 0.018 3.982 11 C -0.083 4.083 12 C -0.124 4.124 13 C -0.151 4.151 14 C -0.150 4.150 15 C -0.149 4.149 16 C -0.111 4.111 17 C 0.320 3.680 18 O -0.493 6.493 19 C -0.110 4.110 20 N -0.021 5.021 21 N -0.131 5.131 22 C -0.100 4.100 23 C 0.112 3.888 24 F -0.091 7.091 25 C -0.148 4.148 26 C -0.165 4.165 27 C -0.034 4.034 28 N -0.036 5.036 29 H 0.085 0.915 30 H 0.148 0.852 31 H 0.090 0.910 32 H 0.141 0.859 33 H 0.131 0.869 34 H 0.130 0.870 35 H 0.133 0.867 36 H 0.142 0.858 37 H 0.173 0.827 38 H 0.180 0.820 39 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 3.733 -8.955 0.401 9.710 hybrid contribution 0.197 -0.300 -0.353 0.504 sum 3.930 -9.255 0.047 10.056 Atomic orbital electron populations 1.69671 1.06306 1.28561 1.45541 1.25522 0.95318 1.00214 0.94745 0.85887 0.80654 0.80675 0.77939 1.18364 1.20350 1.20470 1.20303 0.94253 0.81945 1.48384 0.86201 1.43193 1.31666 1.08877 1.26039 1.20753 0.89547 1.05275 0.82579 1.20519 0.98276 0.93003 0.96540 1.21262 0.98723 0.96060 0.96323 1.21043 1.00298 0.98816 0.94948 1.21000 1.01249 0.93404 0.99317 1.21080 1.00757 0.95751 0.97343 1.21159 0.96827 0.99950 0.93114 1.16272 0.83638 0.86536 0.81506 1.90663 1.54051 1.32812 1.71731 1.24682 1.02892 0.82677 1.00709 1.75409 1.00203 1.19609 1.06869 1.75385 1.19131 1.06708 1.11846 1.21984 0.93306 0.94425 1.00275 1.15995 0.88358 0.90845 0.93630 1.91551 1.54090 1.88378 1.75080 1.21147 0.98702 0.93249 1.01745 1.20674 0.96939 1.01122 0.97730 1.22166 1.00692 0.81113 0.99391 1.43276 1.22503 1.10104 1.27705 0.91476 0.85221 0.91024 0.85866 0.86934 0.87022 0.86743 0.85821 0.82695 0.81969 0.79734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -21.57 11.09 55.50 0.62 -20.95 16 2 C 0.05 1.19 5.20 -17.46 -0.09 1.10 16 3 Si 0.92 19.82 29.57 -169.99 -5.03 14.80 16 4 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 7 C -0.32 -8.02 7.99 -15.04 -0.12 -8.14 16 8 H 0.12 3.13 5.79 -52.48 -0.30 2.82 16 9 N -0.38 -9.32 2.48 -117.70 -0.29 -9.61 16 10 C 0.14 3.14 5.15 -5.20 -0.03 3.11 16 11 C -0.08 -1.64 5.46 -104.63 -0.57 -2.22 16 12 C -0.11 -1.94 9.70 -39.58 -0.38 -2.32 16 13 C -0.13 -2.11 10.05 -39.58 -0.40 -2.51 16 14 C -0.13 -1.98 10.05 -39.59 -0.40 -2.38 16 15 C -0.13 -2.11 10.05 -39.58 -0.40 -2.51 16 16 C -0.09 -1.72 9.70 -39.59 -0.38 -2.10 16 17 C 0.53 12.76 7.59 -13.00 -0.10 12.66 16 18 O -0.61 -14.25 14.88 5.11 0.08 -14.17 16 19 C 0.15 3.42 7.69 -153.56 -1.18 2.24 16 20 N -0.18 -4.23 8.96 32.40 0.29 -3.94 16 21 N -0.28 -6.29 12.32 31.12 0.38 -5.91 16 22 C 0.15 2.84 7.88 -156.00 -1.23 1.61 16 23 C 0.13 2.01 7.34 -39.29 -0.29 1.73 16 24 F -0.11 -1.68 17.28 2.25 0.04 -1.64 16 25 C -0.12 -1.32 10.05 -39.45 -0.40 -1.72 16 26 C -0.14 -1.48 9.99 -39.90 -0.40 -1.88 16 27 C 0.09 1.31 10.57 -16.82 -0.18 1.14 16 28 N -0.36 -6.81 2.96 -60.54 -0.18 -6.99 16 29 H 0.27 6.48 8.32 -40.82 -0.34 6.14 16 30 H 0.13 3.05 5.35 -51.93 -0.28 2.78 16 31 H 0.07 1.61 7.30 -51.93 -0.38 1.23 16 32 H 0.12 2.30 7.84 -52.49 -0.41 1.89 16 33 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 34 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 35 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 36 H 0.12 2.35 8.06 -52.48 -0.42 1.92 16 37 H 0.16 1.08 8.06 -52.49 -0.42 0.66 16 38 H 0.16 0.99 8.06 -52.49 -0.42 0.57 16 39 H 0.19 2.60 6.93 -52.49 -0.36 2.24 16 LS Contribution 345.20 15.07 5.20 5.20 Total: -1.00 -29.48 345.20 -8.84 -38.32 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -3.41 Total: 7.08 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: -6.54 Total: -2.19 kcal Atomic # 7 Polarization: -48.22 SS G_CDS: 0.82 Total: -47.40 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: 0.08 Total: -14.17 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.04 Total: -1.64 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.03 Total: 14.80 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.48 -8.84 -38.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156332624.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.433 kcal (2) G-P(sol) polarization free energy of solvation -29.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds