Wall clock time and date at job start Sat Apr 11 2020 05:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35851 * 119.74128 * 2 1 4 4 C 1.41389 * 118.49506 * 179.97438 * 3 2 1 5 5 N 1.31772 * 133.18103 * 179.64513 * 4 3 2 6 6 C 1.34746 * 109.02058 * 179.89767 * 5 4 3 7 7 C 1.47573 * 125.89835 * 180.15366 * 6 5 4 8 8 O 1.21606 * 120.00148 * 180.27732 * 7 6 5 9 9 N 1.34776 * 120.00025 * 0.27909 * 7 6 5 10 10 C 1.39943 * 119.99852 * 174.89564 * 9 7 6 11 11 C 1.39384 * 119.91111 * 325.52124 * 10 9 7 12 12 C 1.38369 * 120.46435 * 179.72516 * 11 10 9 13 13 C 1.38009 * 120.28783 * 0.55206 * 12 11 10 14 14 F 1.35101 * 120.08900 * 179.70705 * 13 12 11 15 15 C 1.41008 * 119.81530 * 359.72577 * 13 12 11 16 16 C 1.41302 * 120.22503 * 179.97438 * 15 13 12 17 17 H 1.07992 * 120.00124 * 25.31924 * 16 15 13 18 18 C 1.39916 * 119.99688 * 205.32343 * 16 15 13 19 19 N 1.30854 * 120.00318 * 16.69456 * 18 16 15 20 20 Si 1.86804 * 120.00025 * 196.69769 * 18 16 15 21 21 H 1.48508 * 109.46734 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47253 * 119.99505 * 20 18 16 23 23 H 1.48491 * 109.47236 * 240.00142 * 20 18 16 24 24 C 1.38158 * 119.90985 * 145.80179 * 10 9 7 25 25 C 1.36571 * 108.20623 * 0.39099 * 6 5 4 26 26 N 1.36113 * 107.07852 * 359.76704 * 25 6 5 27 27 C 1.36142 * 133.27112 * 179.97438 * 26 25 6 28 28 N 1.30347 * 121.08774 * 180.02562 * 27 26 25 29 29 H 1.08994 * 109.47070 * 270.05149 * 1 2 3 30 30 H 1.08996 * 109.47110 * 30.05668 * 1 2 3 31 31 H 1.09007 * 109.47208 * 150.05445 * 1 2 3 32 32 H 1.08007 * 120.74758 * 359.95792 * 3 2 1 33 33 H 0.96996 * 120.00380 * 354.89295 * 9 7 6 34 34 H 1.08005 * 119.76775 * 359.97438 * 11 10 9 35 35 H 1.07994 * 119.85222 * 180.28150 * 12 11 10 36 36 H 0.97003 * 119.99985 * 180.02562 * 19 18 16 37 37 H 1.08003 * 120.14782 * 359.96695 * 24 10 9 38 38 H 1.08000 * 126.46368 * 179.72781 * 25 6 5 39 39 H 1.08004 * 119.45920 * 0.03587 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1809 1.1796 0.0000 4 6 3.5945 1.1488 0.0006 5 7 4.5169 2.0898 -0.0052 6 6 5.7340 1.5117 0.0010 7 6 7.0285 2.2203 0.0008 8 8 8.0676 1.5885 0.0018 9 7 7.0592 3.5677 -0.0005 10 6 8.2819 4.2398 0.1071 11 6 9.3044 3.7022 0.8871 12 6 10.5198 4.3542 0.9969 13 6 10.7290 5.5516 0.3433 14 9 11.9153 6.1877 0.4582 15 6 9.7009 6.1093 -0.4443 16 6 9.9054 7.3351 -1.1168 17 1 10.9054 7.6457 -1.3809 18 6 8.8124 8.1463 -1.4403 19 7 7.6586 7.9542 -0.8537 20 14 9.0001 9.5038 -2.7098 21 1 10.3940 9.5131 -3.2221 22 1 8.0614 9.2627 -3.8349 23 1 8.6942 10.8143 -2.0820 24 6 8.4704 5.4375 -0.5554 25 6 5.5629 0.1568 0.0023 26 7 4.2219 -0.0767 0.0020 27 6 3.4727 -1.2134 0.0023 28 7 2.1702 -1.1610 0.0014 29 1 -0.3633 0.0009 1.0276 30 1 -0.3633 0.8894 -0.5147 31 1 -0.3634 -0.8905 -0.5130 32 1 1.6489 2.1195 -0.0007 33 1 6.2339 4.0716 -0.0760 34 1 9.1481 2.7680 1.4061 35 1 11.3067 3.9264 1.6003 36 1 6.9007 8.5164 -1.0783 37 1 7.6764 5.8557 -1.1564 38 1 6.3442 -0.5889 0.0028 39 1 3.9655 -2.1745 0.0036 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156433680.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:56 Heat of formation + Delta-G solvation = 22.586295 kcal Electronic energy + Delta-G solvation = -27327.107101 eV Core-core repulsion = 23149.599435 eV Total energy + Delta-G solvation = -4177.507667 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.108 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.19198 -44.25227 -41.27198 -39.74628 -38.78978 -36.10753 -35.58602 -35.05991 -32.82735 -31.81955 -31.70329 -30.05496 -28.22226 -27.31308 -26.22859 -24.48117 -23.53446 -23.27254 -22.47173 -21.30083 -20.00350 -19.39229 -18.42395 -18.06747 -17.80550 -17.55451 -17.39283 -16.94928 -16.75190 -16.38005 -15.98072 -15.82682 -15.66494 -15.51507 -14.86927 -14.77489 -14.64620 -14.46583 -13.96996 -13.59297 -13.42462 -13.38048 -13.30748 -13.14166 -12.97913 -12.80306 -12.50501 -12.10863 -12.05500 -11.81329 -11.57790 -11.35077 -11.29165 -11.14620 -10.78120 -10.58628 -9.56126 -9.14637 -8.89976 -8.60614 -6.46003 -0.68041 -0.05807 0.51211 0.84162 1.01533 1.14658 1.37964 1.47225 1.53475 2.07528 2.17626 2.19569 2.39136 2.64559 2.75075 2.90768 3.32053 3.45235 3.49108 3.86826 4.01847 4.07076 4.16454 4.26943 4.38129 4.48686 4.63974 4.78515 4.83406 4.90725 4.94466 4.96278 5.01566 5.12313 5.20440 5.29808 5.50261 5.58850 5.70262 5.72350 5.93512 6.06911 6.28658 6.46690 6.54691 6.59912 6.73912 6.79212 7.07296 8.23586 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.015338 B = 0.002545 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.131360 B =10998.763387 C =12557.525569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.110 3.890 3 C -0.145 4.145 4 C 0.232 3.768 5 N -0.493 5.493 6 C -0.018 4.018 7 C 0.596 3.404 8 O -0.544 6.544 9 N -0.645 5.645 10 C 0.149 3.851 11 C -0.210 4.210 12 C -0.104 4.104 13 C -0.064 4.064 14 F -0.167 7.167 15 C 0.073 3.927 16 C -0.487 4.487 17 H 0.074 0.926 18 C 0.039 3.961 19 N -0.811 5.811 20 Si 0.986 3.014 21 H -0.263 1.263 22 H -0.259 1.259 23 H -0.262 1.262 24 C -0.178 4.178 25 C 0.024 3.976 26 N -0.413 5.413 27 C 0.340 3.660 28 N -0.495 5.495 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.173 0.827 33 H 0.418 0.582 34 H 0.122 0.878 35 H 0.133 0.867 36 H 0.294 0.706 37 H 0.123 0.877 38 H 0.235 0.765 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.293 -16.843 0.382 24.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.011 4.011 3 C -0.167 4.167 4 C -0.017 4.017 5 N -0.215 5.215 6 C -0.148 4.148 7 C 0.383 3.617 8 O -0.421 6.421 9 N -0.288 5.288 10 C 0.056 3.944 11 C -0.231 4.231 12 C -0.123 4.123 13 C -0.085 4.085 14 F -0.147 7.147 15 C 0.069 3.931 16 C -0.516 4.516 17 H 0.092 0.908 18 C -0.177 4.177 19 N -0.436 5.436 20 Si 0.806 3.194 21 H -0.186 1.186 22 H -0.183 1.183 23 H -0.186 1.186 24 C -0.200 4.200 25 C -0.112 4.112 26 N -0.093 5.093 27 C 0.059 3.941 28 N -0.207 5.207 29 H 0.113 0.887 30 H 0.114 0.886 31 H 0.105 0.895 32 H 0.190 0.810 33 H 0.255 0.745 34 H 0.140 0.860 35 H 0.151 0.849 36 H 0.105 0.895 37 H 0.140 0.860 38 H 0.251 0.749 39 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -17.540 -16.994 0.424 24.427 hybrid contribution 0.816 1.241 -0.345 1.525 sum -16.725 -15.753 0.079 22.976 Atomic orbital electron populations 1.20787 0.84931 1.05065 1.04592 1.21232 0.99116 0.86446 0.94294 1.21147 0.87112 1.02285 1.06135 1.21389 0.95458 0.80505 1.04388 1.70625 0.97884 1.30860 1.22142 1.20490 0.91492 0.92296 1.10522 1.17252 0.86993 0.81590 0.75867 1.90791 1.33634 1.67020 1.50648 1.43234 1.08740 1.06198 1.70675 1.17653 0.86257 0.93019 0.97462 1.20305 0.93676 1.02619 1.06493 1.20641 0.98074 0.93533 1.00083 1.18131 0.84168 0.97224 1.08963 1.91237 1.45204 1.82625 1.95601 1.17718 0.90961 0.93641 0.90798 1.19684 0.95192 1.02955 1.33769 0.90778 1.26734 0.93685 1.00634 0.96665 1.69827 1.02760 1.36683 1.34334 0.85103 0.79750 0.76813 0.77757 1.18635 1.18280 1.18617 1.20830 0.99314 0.95296 1.04565 1.23042 0.83855 0.97465 1.06810 1.44455 1.07735 1.09880 1.47212 1.26099 0.86854 0.90701 0.90428 1.68102 1.05989 1.29165 1.17460 0.88745 0.88623 0.89510 0.80982 0.74498 0.85981 0.84934 0.89519 0.85950 0.74883 0.72545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.70 10.17 71.24 0.72 0.03 16 2 C 0.11 1.53 6.76 41.72 0.28 1.81 16 3 C -0.14 -2.56 9.78 22.49 0.22 -2.34 16 4 C 0.23 5.56 7.85 134.26 1.05 6.62 16 5 N -0.49 -14.99 11.00 -183.23 -2.02 -17.01 16 6 C -0.02 -0.54 6.94 40.77 0.28 -0.25 16 7 C 0.60 22.49 7.55 86.71 0.65 23.15 16 8 O -0.54 -22.55 14.61 -4.05 -0.06 -22.61 16 9 N -0.65 -26.43 5.33 -306.41 -1.63 -28.06 16 10 C 0.15 7.16 6.25 38.10 0.24 7.40 16 11 C -0.21 -9.90 8.65 22.58 0.20 -9.71 16 12 C -0.10 -4.97 10.00 22.25 0.22 -4.74 16 13 C -0.06 -3.45 7.31 22.89 0.17 -3.28 16 14 F -0.17 -8.88 16.72 44.97 0.75 -8.12 16 15 C 0.07 4.07 5.57 -21.26 -0.12 3.95 16 16 C -0.49 -27.06 8.78 23.43 0.21 -26.86 16 17 H 0.07 4.12 7.74 -2.91 -0.02 4.10 16 18 C 0.04 1.98 5.16 85.24 0.44 2.42 16 19 N -0.81 -41.10 10.94 21.82 0.24 -40.86 16 20 Si 0.99 38.17 29.59 68.60 2.03 40.20 16 21 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 22 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 23 H -0.26 -9.60 7.11 99.48 0.71 -8.90 16 24 C -0.18 -9.39 8.59 22.84 0.20 -9.19 16 25 C 0.02 0.52 11.50 83.64 0.96 1.48 16 26 N -0.41 -7.64 2.94 -355.12 -1.04 -8.69 16 27 C 0.34 3.84 12.20 179.95 2.19 6.04 16 28 N -0.50 -6.79 10.28 -187.03 -1.92 -8.71 16 29 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.10 0.43 8.07 -2.39 -0.02 0.41 16 31 H 0.09 0.56 8.14 -2.38 -0.02 0.54 16 32 H 0.17 2.47 8.06 -2.91 -0.02 2.45 16 33 H 0.42 16.10 8.52 -92.71 -0.79 15.31 16 34 H 0.12 5.46 6.47 -2.91 -0.02 5.45 16 35 H 0.13 5.47 8.06 -2.91 -0.02 5.44 16 36 H 0.29 13.24 8.30 -92.71 -0.77 12.47 16 37 H 0.12 6.54 6.18 -2.91 -0.02 6.52 16 38 H 0.23 3.32 8.06 -2.91 -0.02 3.30 16 39 H 0.26 0.17 8.06 -2.91 -0.02 0.14 16 Total: -1.00 -72.51 349.57 4.62 -67.89 By element: Atomic # 1 Polarization: 29.12 SS G_CDS: 0.35 Total: 29.47 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: 7.92 Total: -3.50 kcal Atomic # 7 Polarization: -96.95 SS G_CDS: -6.38 Total: -103.33 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -0.06 Total: -22.61 kcal Atomic # 9 Polarization: -8.88 SS G_CDS: 0.75 Total: -8.12 kcal Atomic # 14 Polarization: 38.17 SS G_CDS: 2.03 Total: 40.20 kcal Total: -72.51 4.62 -67.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156433680.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.479 kcal (2) G-P(sol) polarization free energy of solvation -72.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds