Wall clock time and date at job start Sat Apr 11 2020 05:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30634 * 1 3 3 Si 1.86800 * 120.00346 * 2 1 4 4 H 1.48495 * 109.47422 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46915 * 300.00281 * 3 2 1 6 6 H 1.48503 * 109.47032 * 59.99821 * 3 2 1 7 7 C 1.40141 * 119.99886 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99711 * 179.97438 * 7 2 1 9 9 C 1.46140 * 119.99827 * 0.02562 * 7 2 1 10 10 O 1.21733 * 120.00258 * 359.97438 * 9 7 2 11 11 N 1.34786 * 119.99717 * 180.27072 * 9 7 2 12 12 C 1.38735 * 119.99623 * 179.72368 * 11 9 7 13 13 N 1.31735 * 119.80063 * 359.72451 * 12 11 9 14 14 C 1.33970 * 119.80258 * 179.77019 * 13 12 11 15 15 C 1.40502 * 120.87336 * 180.27363 * 14 13 12 16 16 C 1.36179 * 119.75426 * 180.23495 * 15 14 13 17 17 C 1.39286 * 120.91290 * 0.02562 * 16 15 14 18 18 C 1.36199 * 120.92043 * 359.95796 * 17 16 15 19 19 C 1.40423 * 119.76648 * 0.04242 * 18 17 16 20 20 N 1.34056 * 120.86251 * 180.02562 * 19 18 17 21 21 C 1.31739 * 119.77855 * 179.97438 * 20 19 18 22 22 N 1.38586 * 119.80400 * 180.02562 * 21 20 19 23 23 C 1.46500 * 119.99976 * 359.97438 * 22 21 20 24 24 C 1.50701 * 109.47243 * 179.97438 * 23 22 21 25 25 N 1.34492 * 126.29013 * 269.70794 * 24 23 22 26 26 C 1.31132 * 105.61718 * 179.90437 * 25 24 23 27 27 O 1.33638 * 106.89579 * 0.35599 * 26 25 24 28 28 N 1.21302 * 109.81279 * 359.77021 * 27 26 25 29 29 H 0.96999 * 119.99885 * 0.02562 * 1 2 3 30 30 H 0.97000 * 119.99685 * 359.72788 * 11 9 7 31 31 H 1.08005 * 120.12557 * 0.20563 * 15 14 13 32 32 H 1.08002 * 119.54255 * 180.02562 * 16 15 14 33 33 H 1.08005 * 119.53918 * 180.02562 * 17 16 15 34 34 H 1.08007 * 120.11671 * 180.02562 * 18 17 16 35 35 H 0.97001 * 120.00513 * 179.97438 * 22 21 20 36 36 H 1.09004 * 109.47570 * 299.99942 * 23 22 21 37 37 H 1.09002 * 109.47504 * 59.99828 * 23 22 21 38 38 H 1.07997 * 126.55104 * 180.12790 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.7004 1.3463 0.0006 5 1 1.8816 2.3964 -1.2125 6 1 1.8817 2.3964 1.2125 7 6 2.0070 -1.2137 0.0005 8 1 3.0870 -1.2136 0.0001 9 6 1.2763 -2.4792 0.0005 10 8 0.0589 -2.4792 0.0005 11 7 1.9502 -3.6465 0.0066 12 6 1.2564 -4.8479 0.0124 13 7 -0.0609 -4.8432 0.0174 14 6 -0.7309 -6.0034 0.0184 15 6 -2.1358 -6.0246 0.0180 16 6 -2.7937 -7.2169 0.0238 17 6 -2.0931 -8.4207 0.0307 18 6 -0.7312 -8.4379 0.0309 19 6 -0.0187 -7.2278 0.0251 20 7 1.3218 -7.2191 0.0247 21 6 1.9686 -6.0714 0.0186 22 7 3.3544 -6.0617 0.0177 23 6 4.0957 -7.3253 0.0239 24 6 5.5754 -7.0396 0.0208 25 7 6.3569 -6.9002 -1.0648 26 6 7.5612 -6.6607 -0.6045 27 8 7.4762 -6.6699 0.7292 28 7 6.3317 -6.8885 1.0667 29 1 -0.4850 0.8400 -0.0004 30 1 2.9202 -3.6465 0.0069 31 1 -2.6919 -5.0987 0.0136 32 1 -3.8736 -7.2292 0.0231 33 1 -2.6374 -9.3536 0.0348 34 1 -0.2011 -9.3789 0.0359 35 1 3.8336 -5.2184 0.0128 36 1 3.8370 -7.8940 0.9172 37 1 3.8359 -7.9035 -0.8628 38 1 8.4522 -6.4922 -1.1910 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162275864.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:07 Heat of formation + Delta-G solvation = 134.167094 kcal Electronic energy + Delta-G solvation = -28007.408132 eV Core-core repulsion = 23854.658933 eV Total energy + Delta-G solvation = -4152.749199 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.107 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -46.00000 -40.95099 -38.33257 -37.40317 -36.41245 -35.18721 -34.09237 -33.15456 -32.62068 -32.24697 -29.81992 -29.34126 -27.44835 -26.60172 -24.57368 -24.01239 -23.07891 -22.49012 -21.72075 -20.42807 -19.01160 -18.65985 -18.29333 -17.97232 -17.05684 -16.64233 -16.20493 -15.57023 -15.50900 -15.23369 -15.13674 -14.59532 -14.13590 -13.89610 -13.85489 -13.59884 -13.35601 -12.98369 -12.78948 -12.60489 -12.12274 -11.74267 -11.59941 -11.43816 -11.42156 -11.29428 -11.29165 -10.95383 -10.81593 -10.69157 -10.58167 -10.32586 -9.75571 -9.28190 -8.89178 -8.75311 -7.83906 -7.55685 -7.04447 -6.36613 -4.86397 0.81132 0.85396 1.21056 1.73708 2.51934 2.65710 3.03153 3.04823 3.11060 3.15535 3.28460 3.37224 3.72881 3.75743 4.08455 4.38684 4.52102 4.65189 4.68425 4.72834 5.06324 5.12175 5.22631 5.31261 5.36012 5.45265 5.59667 5.61388 5.63546 5.81207 5.86420 6.34669 6.45021 6.61517 6.74031 6.81851 6.92692 7.17543 7.23660 7.37097 7.72139 7.79084 7.98276 8.04787 8.45574 8.80018 9.10715 10.35873 10.53310 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.006101 B = 0.004798 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4588.313209 B = 5834.577201 C =10255.053514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.756 5.756 2 C 0.086 3.914 3 Si 0.914 3.086 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.538 4.538 8 H 0.072 0.928 9 C 0.529 3.471 10 O -0.503 6.503 11 N -0.660 5.660 12 C 0.344 3.656 13 N -0.409 5.409 14 C 0.079 3.921 15 C -0.072 4.072 16 C -0.123 4.123 17 C -0.118 4.118 18 C -0.090 4.090 19 C 0.075 3.925 20 N -0.493 5.493 21 C 0.358 3.642 22 N -0.712 5.712 23 C 0.232 3.768 24 C 0.151 3.849 25 N -0.473 5.473 26 C 0.160 3.840 27 O 0.085 5.915 28 N -0.362 5.362 29 H 0.273 0.727 30 H 0.392 0.608 31 H 0.135 0.865 32 H 0.124 0.876 33 H 0.123 0.877 34 H 0.126 0.874 35 H 0.408 0.592 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.640 -14.580 -1.027 18.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.384 5.384 2 C -0.135 4.135 3 Si 0.738 3.262 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.574 4.574 8 H 0.090 0.910 9 C 0.333 3.667 10 O -0.378 6.378 11 N -0.308 5.308 12 C 0.087 3.913 13 N -0.132 5.132 14 C -0.045 4.045 15 C -0.092 4.092 16 C -0.144 4.144 17 C -0.139 4.139 18 C -0.110 4.110 19 C -0.048 4.048 20 N -0.218 5.218 21 C 0.100 3.900 22 N -0.353 5.353 23 C 0.106 3.894 24 C -0.122 4.122 25 N -0.206 5.206 26 C -0.081 4.081 27 O 0.022 5.978 28 N -0.066 5.066 29 H 0.084 0.916 30 H 0.227 0.773 31 H 0.153 0.847 32 H 0.142 0.858 33 H 0.141 0.859 34 H 0.144 0.856 35 H 0.246 0.754 36 H 0.112 0.888 37 H 0.117 0.883 38 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 8.748 -14.731 -0.509 17.141 hybrid contribution 1.658 1.194 -0.221 2.055 sum 10.406 -13.537 -0.731 17.090 Atomic orbital electron populations 1.69986 1.07115 1.27827 1.33490 1.25719 0.94725 1.00455 0.92623 0.86212 0.80342 0.81228 0.78438 1.18685 1.19942 1.19953 1.20818 0.93691 0.88673 1.54203 0.91026 1.18620 0.88051 0.81440 0.78597 1.90762 1.12816 1.84390 1.49797 1.44670 1.09072 1.03849 1.73202 1.19628 0.89649 0.86051 0.95988 1.69154 1.04232 1.25261 1.14546 1.19512 0.95374 0.88375 1.01210 1.20772 0.91594 0.98857 0.98020 1.20759 0.99916 0.92018 1.01680 1.20724 0.93823 0.98016 1.01297 1.20490 0.93607 0.95935 1.00961 1.19068 0.88435 0.94303 1.02970 1.68018 1.08338 1.24794 1.20665 1.19101 0.85122 0.89919 0.95847 1.44007 1.01460 1.07913 1.81968 1.19265 0.78251 0.86989 1.04887 1.25948 1.00333 1.02533 0.83425 1.71946 1.01183 1.17830 1.29645 1.30589 0.99289 0.96075 0.82141 1.85350 1.23761 1.63040 1.25614 1.74754 0.90551 1.17441 1.23880 0.91647 0.77308 0.84746 0.85792 0.85932 0.85571 0.75443 0.88799 0.88338 0.71912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.83 11.82 55.56 0.66 -21.17 16 2 C 0.09 2.30 5.50 -17.35 -0.10 2.20 16 3 Si 0.91 19.23 29.56 -169.99 -5.02 14.20 16 4 H -0.26 -5.30 7.11 56.52 0.40 -4.89 16 5 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 7 C -0.54 -14.39 9.53 -35.70 -0.34 -14.73 16 8 H 0.07 1.72 7.85 -52.49 -0.41 1.30 16 9 C 0.53 14.63 7.70 -13.09 -0.10 14.53 16 10 O -0.50 -15.91 13.26 5.16 0.07 -15.85 16 11 N -0.66 -14.70 5.35 -12.41 -0.07 -14.76 16 12 C 0.34 7.54 7.46 -154.91 -1.16 6.38 16 13 N -0.41 -9.93 7.94 -9.81 -0.08 -10.00 16 14 C 0.08 1.66 6.59 -84.78 -0.56 1.10 16 15 C -0.07 -1.31 9.98 -39.47 -0.39 -1.70 16 16 C -0.12 -1.74 9.95 -39.93 -0.40 -2.14 16 17 C -0.12 -1.54 9.95 -39.93 -0.40 -1.93 16 18 C -0.09 -1.33 9.97 -39.49 -0.39 -1.73 16 19 C 0.08 1.38 6.59 -84.77 -0.56 0.83 16 20 N -0.49 -8.84 9.65 -9.85 -0.10 -8.93 16 21 C 0.36 6.49 7.52 -155.05 -1.17 5.33 16 22 N -0.71 -10.27 5.67 -61.18 -0.35 -10.61 16 23 C 0.23 2.82 6.31 -5.19 -0.03 2.79 16 24 C 0.15 1.72 7.59 -156.37 -1.19 0.53 16 25 N -0.47 -4.83 11.55 -13.72 -0.16 -4.99 16 26 C 0.16 0.99 13.40 51.98 0.70 1.69 16 27 O 0.09 0.73 11.31 18.11 0.20 0.93 16 28 N -0.36 -4.14 12.16 30.88 0.38 -3.77 16 29 H 0.27 7.11 8.29 -40.82 -0.34 6.77 16 30 H 0.39 7.16 6.81 -40.82 -0.28 6.88 16 31 H 0.13 2.48 8.06 -52.48 -0.42 2.06 16 32 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 33 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 34 H 0.13 1.59 8.06 -52.48 -0.42 1.16 16 35 H 0.41 5.54 6.60 -40.82 -0.27 5.27 16 36 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.27 0.04 8.06 -52.49 -0.42 -0.38 16 LS Contribution 343.75 15.07 5.18 5.18 Total: -1.00 -37.46 343.75 -8.42 -45.88 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -3.05 Total: 10.76 kcal Atomic # 6 Polarization: 19.21 SS G_CDS: -6.08 Total: 13.13 kcal Atomic # 7 Polarization: -74.53 SS G_CDS: 0.29 Total: -74.24 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: 0.27 Total: -14.91 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.02 Total: 14.20 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -37.46 -8.42 -45.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162275864.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.047 kcal (2) G-P(sol) polarization free energy of solvation -37.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds