Wall clock time and date at job start Sat Apr 11 2020 05:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30634 * 1 3 3 Si 1.86800 * 120.00346 * 2 1 4 4 H 1.48495 * 109.47422 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46915 * 300.00281 * 3 2 1 6 6 H 1.48503 * 109.47032 * 59.99821 * 3 2 1 7 7 C 1.40141 * 119.99886 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99711 * 179.97438 * 7 2 1 9 9 C 1.46140 * 119.99827 * 0.02562 * 7 2 1 10 10 O 1.21733 * 120.00258 * 359.97438 * 9 7 2 11 11 N 1.34786 * 119.99717 * 180.27072 * 9 7 2 12 12 C 1.38735 * 119.99623 * 179.72368 * 11 9 7 13 13 N 1.31735 * 119.80063 * 359.72451 * 12 11 9 14 14 C 1.33970 * 119.80258 * 179.77019 * 13 12 11 15 15 C 1.40502 * 120.87336 * 180.27363 * 14 13 12 16 16 C 1.36179 * 119.75426 * 180.23495 * 15 14 13 17 17 C 1.39286 * 120.91290 * 0.02562 * 16 15 14 18 18 C 1.36199 * 120.92043 * 359.95796 * 17 16 15 19 19 C 1.40423 * 119.76648 * 0.04242 * 18 17 16 20 20 N 1.34056 * 120.86251 * 180.02562 * 19 18 17 21 21 C 1.31739 * 119.77855 * 179.97438 * 20 19 18 22 22 N 1.38586 * 119.80400 * 180.02562 * 21 20 19 23 23 C 1.46500 * 119.99976 * 359.97438 * 22 21 20 24 24 C 1.50701 * 109.47243 * 179.97438 * 23 22 21 25 25 N 1.34492 * 126.29013 * 269.70794 * 24 23 22 26 26 C 1.31132 * 105.61718 * 179.90437 * 25 24 23 27 27 O 1.33638 * 106.89579 * 0.35599 * 26 25 24 28 28 N 1.21302 * 109.81279 * 359.77021 * 27 26 25 29 29 H 0.96999 * 119.99885 * 0.02562 * 1 2 3 30 30 H 0.97000 * 119.99685 * 359.72788 * 11 9 7 31 31 H 1.08005 * 120.12557 * 0.20563 * 15 14 13 32 32 H 1.08002 * 119.54255 * 180.02562 * 16 15 14 33 33 H 1.08005 * 119.53918 * 180.02562 * 17 16 15 34 34 H 1.08007 * 120.11671 * 180.02562 * 18 17 16 35 35 H 0.97001 * 120.00513 * 179.97438 * 22 21 20 36 36 H 1.09004 * 109.47570 * 299.99942 * 23 22 21 37 37 H 1.09002 * 109.47504 * 59.99828 * 23 22 21 38 38 H 1.07997 * 126.55104 * 180.12790 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.7004 1.3463 0.0006 5 1 1.8816 2.3964 -1.2125 6 1 1.8817 2.3964 1.2125 7 6 2.0070 -1.2137 0.0005 8 1 3.0870 -1.2136 0.0001 9 6 1.2763 -2.4792 0.0005 10 8 0.0589 -2.4792 0.0005 11 7 1.9502 -3.6465 0.0066 12 6 1.2564 -4.8479 0.0124 13 7 -0.0609 -4.8432 0.0174 14 6 -0.7309 -6.0034 0.0184 15 6 -2.1358 -6.0246 0.0180 16 6 -2.7937 -7.2169 0.0238 17 6 -2.0931 -8.4207 0.0307 18 6 -0.7312 -8.4379 0.0309 19 6 -0.0187 -7.2278 0.0251 20 7 1.3218 -7.2191 0.0247 21 6 1.9686 -6.0714 0.0186 22 7 3.3544 -6.0617 0.0177 23 6 4.0957 -7.3253 0.0239 24 6 5.5754 -7.0396 0.0208 25 7 6.3569 -6.9002 -1.0648 26 6 7.5612 -6.6607 -0.6045 27 8 7.4762 -6.6699 0.7292 28 7 6.3317 -6.8885 1.0667 29 1 -0.4850 0.8400 -0.0004 30 1 2.9202 -3.6465 0.0069 31 1 -2.6919 -5.0987 0.0136 32 1 -3.8736 -7.2292 0.0231 33 1 -2.6374 -9.3536 0.0348 34 1 -0.2011 -9.3789 0.0359 35 1 3.8336 -5.2184 0.0128 36 1 3.8370 -7.8940 0.9172 37 1 3.8359 -7.9035 -0.8628 38 1 8.4522 -6.4922 -1.1910 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162275864.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:06 Heat of formation + Delta-G solvation = 104.094656 kcal Electronic energy + Delta-G solvation = -28008.712171 eV Core-core repulsion = 23854.658933 eV Total energy + Delta-G solvation = -4154.053237 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.107 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -46.73410 -42.41166 -39.93726 -38.84911 -37.50157 -36.34748 -35.70935 -34.68442 -34.38137 -33.37782 -31.08408 -30.76681 -28.57465 -28.56194 -25.62787 -25.14442 -24.39599 -23.45768 -22.99819 -22.23424 -20.47869 -19.89948 -19.18367 -18.92864 -18.52963 -18.29780 -17.40451 -17.01033 -16.75701 -16.67432 -16.44319 -15.91031 -15.72744 -15.27412 -15.06236 -14.83540 -14.69713 -14.57296 -14.36227 -13.54494 -13.27118 -13.11445 -12.88672 -12.87212 -12.77961 -12.72575 -12.63144 -12.54529 -12.29584 -12.15515 -11.98392 -11.32251 -11.12709 -10.96578 -10.69863 -10.44624 -9.51605 -9.19294 -8.53366 -8.36678 -6.97511 -0.52034 -0.19127 0.15257 0.98210 1.10372 1.38477 1.38812 1.57121 1.90602 1.93566 2.07773 2.15772 2.35317 2.45354 2.58141 3.05927 3.14888 3.18057 3.37391 3.58600 3.65773 3.91170 4.00938 4.15544 4.31277 4.35362 4.45743 4.54061 4.69453 4.74872 4.96114 5.06369 5.22021 5.25068 5.30183 5.45501 5.53270 5.58320 5.68467 5.95789 6.02972 6.09098 6.59539 6.73764 6.85377 7.13059 7.31669 8.34205 8.55426 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.006101 B = 0.004798 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4588.313209 B = 5834.577201 C =10255.053514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.029 3.971 3 Si 1.004 2.996 4 H -0.242 1.242 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.561 4.561 8 H 0.097 0.903 9 C 0.516 3.484 10 O -0.558 6.558 11 N -0.656 5.656 12 C 0.313 3.687 13 N -0.460 5.460 14 C 0.038 3.962 15 C -0.107 4.107 16 C -0.100 4.100 17 C -0.094 4.094 18 C -0.093 4.093 19 C 0.066 3.934 20 N -0.487 5.487 21 C 0.363 3.637 22 N -0.700 5.700 23 C 0.236 3.764 24 C 0.138 3.862 25 N -0.508 5.508 26 C 0.190 3.810 27 O 0.089 5.911 28 N -0.385 5.385 29 H 0.278 0.722 30 H 0.409 0.591 31 H 0.112 0.888 32 H 0.163 0.837 33 H 0.176 0.824 34 H 0.156 0.844 35 H 0.411 0.589 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.322 0.678 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.551 -16.575 -1.363 20.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.188 4.188 3 Si 0.822 3.178 4 H -0.165 1.165 5 H -0.193 1.193 6 H -0.194 1.194 7 C -0.597 4.597 8 H 0.115 0.885 9 C 0.321 3.679 10 O -0.437 6.437 11 N -0.305 5.305 12 C 0.057 3.943 13 N -0.182 5.182 14 C -0.085 4.085 15 C -0.127 4.127 16 C -0.119 4.119 17 C -0.114 4.114 18 C -0.113 4.113 19 C -0.057 4.057 20 N -0.212 5.212 21 C 0.105 3.895 22 N -0.340 5.340 23 C 0.111 3.889 24 C -0.134 4.134 25 N -0.241 5.241 26 C -0.049 4.049 27 O 0.025 5.975 28 N -0.090 5.090 29 H 0.088 0.912 30 H 0.246 0.754 31 H 0.130 0.870 32 H 0.181 0.819 33 H 0.193 0.807 34 H 0.174 0.826 35 H 0.248 0.752 36 H 0.113 0.887 37 H 0.119 0.881 38 H 0.336 0.664 Dipole moment (debyes) X Y Z Total from point charges 10.717 -16.802 -0.852 19.948 hybrid contribution 1.015 1.577 -0.139 1.881 sum 11.732 -15.225 -0.991 19.247 Atomic orbital electron populations 1.70168 1.09675 1.29369 1.34982 1.27031 0.95554 1.05031 0.91146 0.84880 0.79448 0.74895 0.78541 1.16504 1.19314 1.19414 1.21384 0.95016 0.88984 1.54313 0.88544 1.19018 0.87747 0.83179 0.77965 1.90713 1.14976 1.85842 1.52151 1.44016 1.09648 1.03206 1.73668 1.19774 0.89742 0.86863 0.97912 1.68932 1.05997 1.28190 1.15084 1.19907 0.96503 0.88466 1.03642 1.20856 0.90873 1.00011 1.01000 1.21231 1.01846 0.90802 0.98068 1.21317 0.93234 0.99393 0.97415 1.20913 0.94587 0.95440 1.00387 1.19550 0.88786 0.94880 1.02437 1.68151 1.08210 1.23915 1.20955 1.18915 0.86341 0.88590 0.95636 1.44031 1.00098 1.09145 1.80750 1.19244 0.79015 0.85654 1.04971 1.25723 0.99951 1.03688 0.84073 1.71929 1.02655 1.19734 1.29732 1.31766 0.99645 0.92365 0.81168 1.85315 1.22519 1.62757 1.26866 1.74751 0.91518 1.18205 1.24523 0.91213 0.75389 0.86957 0.81935 0.80667 0.82605 0.75162 0.88732 0.88088 0.66384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -49.35 11.82 21.85 0.26 -49.09 16 2 C 0.03 1.56 5.50 85.33 0.47 2.03 16 3 Si 1.00 39.80 29.56 68.60 2.03 41.83 16 4 H -0.24 -8.70 7.11 99.48 0.71 -7.99 16 5 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 6 H -0.27 -10.36 7.11 99.48 0.71 -9.66 16 7 C -0.56 -31.05 9.53 24.78 0.24 -30.82 16 8 H 0.10 4.64 7.85 -2.91 -0.02 4.62 16 9 C 0.52 30.40 7.70 86.29 0.66 31.07 16 10 O -0.56 -38.07 13.26 -4.45 -0.06 -38.13 16 11 N -0.66 -31.13 5.35 -311.37 -1.67 -32.80 16 12 C 0.31 14.71 7.46 133.96 1.00 15.71 16 13 N -0.46 -24.11 7.94 -184.96 -1.47 -25.58 16 14 C 0.04 1.68 6.59 40.21 0.26 1.94 16 15 C -0.11 -4.05 9.98 22.34 0.22 -3.83 16 16 C -0.10 -2.58 9.95 22.04 0.22 -2.36 16 17 C -0.09 -2.04 9.95 22.05 0.22 -1.82 16 18 C -0.09 -2.51 9.97 22.33 0.22 -2.29 16 19 C 0.07 2.45 6.59 40.18 0.26 2.72 16 20 N -0.49 -17.61 9.65 -185.08 -1.79 -19.39 16 21 C 0.36 13.70 7.52 134.01 1.01 14.71 16 22 N -0.70 -20.65 5.67 -347.47 -1.97 -22.62 16 23 C 0.24 5.71 6.31 85.63 0.54 6.25 16 24 C 0.14 3.05 7.59 138.46 1.05 4.10 16 25 N -0.51 -9.54 11.55 -315.38 -3.64 -13.18 16 26 C 0.19 1.78 13.40 130.51 1.75 3.53 16 27 O 0.09 1.35 11.31 74.88 0.85 2.20 16 28 N -0.39 -8.45 12.16 -60.39 -0.73 -9.19 16 29 H 0.28 15.22 8.29 -92.71 -0.77 14.45 16 30 H 0.41 15.75 6.81 -92.71 -0.63 15.12 16 31 H 0.11 4.59 8.06 -2.91 -0.02 4.56 16 32 H 0.16 2.94 8.06 -2.91 -0.02 2.92 16 33 H 0.18 2.11 8.06 -2.91 -0.02 2.09 16 34 H 0.16 3.27 8.06 -2.91 -0.02 3.25 16 35 H 0.41 11.49 6.60 -92.71 -0.61 10.87 16 36 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 38 H 0.32 -1.47 8.06 -2.91 -0.02 -1.49 16 Total: -1.00 -91.10 343.75 -0.13 -91.23 By element: Atomic # 1 Polarization: 33.84 SS G_CDS: -0.07 Total: 33.77 kcal Atomic # 6 Polarization: 32.81 SS G_CDS: 8.13 Total: 40.94 kcal Atomic # 7 Polarization: -160.83 SS G_CDS: -11.01 Total: -171.84 kcal Atomic # 8 Polarization: -36.72 SS G_CDS: 0.79 Total: -35.93 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 2.03 Total: 41.83 kcal Total: -91.10 -0.13 -91.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162275864.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.326 kcal (2) G-P(sol) polarization free energy of solvation -91.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds