Wall clock time and date at job start Sat Apr 11 2020 05:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30727 * 1 3 3 Si 1.86802 * 120.00006 * 2 1 4 4 H 1.48503 * 109.47209 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46912 * 300.00052 * 3 2 1 6 6 H 1.48491 * 109.47432 * 59.99881 * 3 2 1 7 7 C 1.40047 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00470 * 162.82849 * 7 2 1 9 9 C 1.41273 * 120.00164 * 342.82628 * 7 2 1 10 10 C 1.40715 * 120.15720 * 334.75336 * 9 7 2 11 11 N 1.31907 * 119.93269 * 179.97438 * 10 9 7 12 12 C 1.32155 * 120.26863 * 359.72392 * 11 10 9 13 13 C 1.39916 * 120.31977 * 0.53369 * 12 11 10 14 14 N 1.38836 * 119.96677 * 179.74532 * 13 12 11 15 15 C 1.46989 * 110.99844 * 111.55467 * 14 13 12 16 16 C 1.53444 * 109.64396 * 53.62632 * 15 14 13 17 17 N 1.46340 * 108.22268 * 49.41970 * 16 15 14 18 18 N 1.39490 * 129.21077 * 163.62151 * 17 16 15 19 19 C 1.31058 * 106.53502 * 180.26167 * 18 17 16 20 20 C 1.50705 * 125.48450 * 179.91756 * 19 18 17 21 21 F 1.39902 * 109.46665 * 105.00135 * 20 19 18 22 22 F 1.39898 * 109.47237 * 224.99930 * 20 19 18 23 23 F 1.39899 * 109.46993 * 345.00474 * 20 19 18 24 24 N 1.33547 * 109.03200 * 359.94201 * 19 18 17 25 25 C 1.30133 * 109.71284 * 359.96698 * 24 19 18 26 26 C 1.47349 * 111.00358 * 235.76965 * 14 13 12 27 27 N 1.32256 * 120.06841 * 359.47263 * 13 12 11 28 28 H 0.97005 * 120.00340 * 359.97438 * 1 2 3 29 29 H 1.08008 * 120.03511 * 359.97438 * 10 9 7 30 30 H 1.08002 * 119.84107 * 180.25317 * 12 11 10 31 31 H 1.08998 * 109.43970 * 173.67590 * 15 14 13 32 32 H 1.09003 * 109.44202 * 293.60724 * 15 14 13 33 33 H 1.09000 * 109.71637 * 169.10486 * 16 15 14 34 34 H 1.09005 * 109.71522 * 289.69827 * 16 15 14 35 35 H 1.09000 * 109.74368 * 166.31138 * 26 14 13 36 36 H 1.09008 * 109.77594 * 45.62903 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 3.7013 1.3464 -0.0006 5 1 1.8825 2.3965 -1.2126 6 1 1.8826 2.3965 1.2124 7 6 2.0075 -1.2128 -0.0005 8 1 3.0515 -1.2337 -0.2767 9 6 1.3484 -2.4092 0.3602 10 6 0.2195 -2.3691 1.1992 11 7 -0.3928 -3.4888 1.5328 12 6 0.0463 -4.6492 1.0777 13 6 1.1710 -4.7023 0.2471 14 7 1.6291 -5.9259 -0.2225 15 6 1.4229 -6.0440 -1.6730 16 6 2.0516 -4.8378 -2.3833 17 7 3.4172 -4.6733 -1.8838 18 7 4.4716 -3.9378 -2.4252 19 6 5.4935 -4.1038 -1.6217 20 6 6.8597 -3.4950 -1.8064 21 9 7.0253 -2.4388 -0.9041 22 9 7.8387 -4.4665 -1.5721 23 9 6.9830 -3.0145 -3.1145 24 7 5.1295 -4.8998 -0.6130 25 6 3.8840 -5.2485 -0.7565 26 6 3.0441 -6.1318 0.1331 27 7 1.7949 -3.5876 -0.0955 28 1 -0.4851 0.8401 0.0004 29 1 -0.1453 -1.4224 1.5698 30 1 -0.4628 -5.5614 1.3520 31 1 1.8903 -6.9607 -2.0324 32 1 0.3544 -6.0736 -1.8864 33 1 2.0722 -5.0141 -3.4588 34 1 1.4704 -3.9409 -2.1689 35 1 3.3149 -7.1759 -0.0234 36 1 3.2051 -5.8623 1.1770 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163717369.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:10 Heat of formation + Delta-G solvation = -7.409518 kcal Electronic energy + Delta-G solvation = -30448.428387 eV Core-core repulsion = 25747.683225 eV Total energy + Delta-G solvation = -4700.745161 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.095 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -51.39776 -48.92675 -48.89059 -43.76952 -41.48088 -39.11376 -36.10697 -34.99674 -34.20033 -33.18941 -31.49294 -30.93166 -28.66242 -28.03615 -26.52663 -24.92066 -24.09041 -23.55383 -22.75597 -21.28931 -19.81924 -19.65513 -19.37745 -19.18172 -18.26531 -17.93225 -17.41987 -17.12867 -16.96029 -16.68740 -16.55333 -15.81726 -15.72052 -15.53429 -15.31382 -15.03821 -15.02562 -15.01378 -14.66718 -14.52242 -14.11202 -13.73194 -13.64510 -13.50861 -13.50000 -13.19372 -12.99871 -12.86045 -12.63416 -12.15953 -11.89112 -11.70875 -11.50522 -11.17175 -10.98632 -10.74961 -10.36694 -9.75151 -9.33706 -8.97418 -6.76994 0.20183 0.40315 0.72752 0.75059 1.27242 1.29557 1.37294 1.43594 1.44623 2.06952 2.18821 2.42816 2.48932 2.66025 3.07651 3.11380 3.30818 3.47332 3.71305 3.90954 4.06334 4.08054 4.24989 4.30549 4.37392 4.47425 4.55954 4.67511 4.71396 4.90568 4.94935 4.95419 5.19939 5.46057 5.49892 5.60747 5.87329 6.02860 6.41665 6.53725 6.64430 7.09012 7.57004 8.02588 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.009482 B = 0.005935 C = 0.004050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2952.106354 B = 4716.394267 C = 6911.272154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.049 3.951 3 Si 0.982 3.018 4 H -0.270 1.270 5 H -0.258 1.258 6 H -0.249 1.249 7 C -0.450 4.450 8 H 0.060 0.940 9 C 0.216 3.784 10 C -0.012 4.012 11 N -0.448 5.448 12 C -0.054 4.054 13 C 0.244 3.756 14 N -0.453 5.453 15 C 0.049 3.951 16 C 0.093 3.907 17 N -0.320 5.320 18 N -0.275 5.275 19 C 0.107 3.893 20 C 0.585 3.415 21 F -0.168 7.168 22 F -0.153 7.153 23 F -0.159 7.159 24 N -0.527 5.527 25 C 0.273 3.727 26 C 0.144 3.856 27 N -0.558 5.558 28 H 0.301 0.699 29 H 0.146 0.854 30 H 0.171 0.829 31 H 0.137 0.863 32 H 0.130 0.870 33 H 0.122 0.878 34 H 0.071 0.929 35 H 0.168 0.832 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.334 -9.889 -4.330 11.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.171 4.171 3 Si 0.802 3.198 4 H -0.195 1.195 5 H -0.183 1.183 6 H -0.173 1.173 7 C -0.483 4.483 8 H 0.078 0.922 9 C 0.088 3.912 10 C -0.180 4.180 11 N -0.160 5.160 12 C -0.214 4.214 13 C 0.008 3.992 14 N -0.173 5.173 15 C -0.078 4.078 16 C -0.030 4.030 17 N -0.110 5.110 18 N -0.108 5.108 19 C -0.176 4.176 20 C 0.528 3.472 21 F -0.149 7.149 22 F -0.134 7.134 23 F -0.140 7.140 24 N -0.256 5.256 25 C -0.005 4.005 26 C 0.014 3.986 27 N -0.281 5.281 28 H 0.113 0.887 29 H 0.163 0.837 30 H 0.188 0.812 31 H 0.155 0.845 32 H 0.148 0.852 33 H 0.140 0.860 34 H 0.089 0.911 35 H 0.185 0.815 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 3.957 -9.814 -4.538 11.514 hybrid contribution 0.713 2.012 -0.401 2.172 sum 4.670 -7.802 -4.940 10.348 Atomic orbital electron populations 1.69699 1.08653 1.31955 1.32278 1.26649 0.95555 1.04199 0.90675 0.85150 0.78838 0.75876 0.79981 1.19450 1.18256 1.17318 1.19331 0.97204 0.90937 1.40823 0.92186 1.19284 0.91379 0.91071 0.89500 1.23517 0.98034 0.96134 1.00288 1.67965 1.28745 0.99099 1.20223 1.22963 0.98579 0.96219 1.03591 1.20870 0.94076 0.88702 0.95513 1.60599 1.16469 1.25478 1.14749 1.22976 1.04534 0.96664 0.83653 1.22954 0.76062 1.02216 1.01738 1.49967 1.10383 1.32448 1.18178 1.77696 0.95081 1.15396 1.22586 1.23846 0.95930 1.02876 0.94998 1.16109 0.81268 0.75644 0.74225 1.93252 1.95732 1.57970 1.67956 1.93239 1.63428 1.62537 1.94218 1.93236 1.96152 1.88401 1.36204 1.69845 1.13418 1.18029 1.24261 1.25494 0.89899 0.95995 0.89098 1.21456 0.81263 0.98965 0.96907 1.69052 1.34488 0.99018 1.25492 0.88727 0.83703 0.81172 0.84481 0.85158 0.86003 0.91056 0.81504 0.87703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.53 10.96 21.84 0.24 -38.29 16 2 C 0.05 2.35 5.14 85.30 0.44 2.79 16 3 Si 0.98 37.32 29.59 68.60 2.03 39.35 16 4 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 5 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 6 H -0.25 -8.77 7.11 99.48 0.71 -8.07 16 7 C -0.45 -23.85 9.29 23.46 0.22 -23.63 16 8 H 0.06 3.40 7.90 -2.91 -0.02 3.37 16 9 C 0.22 11.18 6.40 40.16 0.26 11.43 16 10 C -0.01 -0.59 9.87 85.29 0.84 0.26 16 11 N -0.45 -20.80 10.47 -192.23 -2.01 -22.81 16 12 C -0.05 -2.13 11.17 85.05 0.95 -1.18 16 13 C 0.24 9.18 5.04 133.35 0.67 9.85 16 14 N -0.45 -12.03 4.95 -703.06 -3.48 -15.51 16 15 C 0.05 1.03 5.95 86.44 0.51 1.54 16 16 C 0.09 2.70 6.47 86.56 0.56 3.26 16 17 N -0.32 -11.33 3.38 -338.02 -1.14 -12.47 16 18 N -0.28 -10.95 12.55 -50.99 -0.64 -11.59 16 19 C 0.11 4.13 7.42 138.44 1.03 5.16 16 20 C 0.58 19.90 3.57 71.24 0.25 20.16 16 21 F -0.17 -6.02 17.30 44.97 0.78 -5.24 16 22 F -0.15 -4.70 17.30 44.97 0.78 -3.92 16 23 F -0.16 -5.13 17.15 44.97 0.77 -4.36 16 24 N -0.53 -19.99 11.18 -179.20 -2.00 -21.99 16 25 C 0.27 9.28 6.57 138.34 0.91 10.18 16 26 C 0.14 3.69 6.15 85.53 0.53 4.21 16 27 N -0.56 -25.38 5.60 -186.00 -1.04 -26.43 16 28 H 0.30 12.85 8.29 -92.70 -0.77 12.08 16 29 H 0.15 7.63 6.18 -2.91 -0.02 7.61 16 30 H 0.17 5.50 8.06 -2.91 -0.02 5.47 16 31 H 0.14 1.77 8.08 -2.39 -0.02 1.75 16 32 H 0.13 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.12 2.80 8.14 -2.39 -0.02 2.78 16 34 H 0.07 2.74 6.39 -2.38 -0.02 2.73 16 35 H 0.17 2.64 8.14 -2.39 -0.02 2.62 16 36 H 0.10 2.94 8.01 -2.38 -0.02 2.92 16 Total: -1.00 -65.01 322.17 2.62 -62.39 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: 1.18 Total: 16.84 kcal Atomic # 6 Polarization: 36.86 SS G_CDS: 7.17 Total: 44.02 kcal Atomic # 7 Polarization: -139.00 SS G_CDS: -10.08 Total: -149.08 kcal Atomic # 9 Polarization: -15.84 SS G_CDS: 2.33 Total: -13.52 kcal Atomic # 14 Polarization: 37.32 SS G_CDS: 2.03 Total: 39.35 kcal Total: -65.01 2.62 -62.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163717369.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.978 kcal (2) G-P(sol) polarization free energy of solvation -65.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds