Wall clock time and date at job start Sat Apr 11 2020 05:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38819 * 120.73899 * 2 1 4 4 C 1.38193 * 119.31746 * 179.97438 * 3 2 1 5 5 Cl 1.73596 * 119.58728 * 179.97438 * 4 3 2 6 6 N 1.32061 * 120.82282 * 359.97438 * 4 3 2 7 7 C 1.32418 * 121.60797 * 0.02597 * 6 4 3 8 8 N 1.38994 * 119.69974 * 179.97438 * 7 6 4 9 9 C 1.46958 * 110.99847 * 297.79362 * 8 7 6 10 10 C 1.53048 * 109.36713 * 183.18769 * 9 8 7 11 11 N 1.46959 * 109.36488 * 301.60407 * 10 9 8 12 12 C 1.46899 * 110.99806 * 183.18499 * 11 10 9 13 13 C 1.50701 * 109.47105 * 169.99641 * 12 11 10 14 14 H 1.08003 * 119.99746 * 359.97438 * 13 12 11 15 15 C 1.37872 * 120.00188 * 179.97438 * 13 12 11 16 16 N 1.31523 * 120.00060 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 120.00159 * 0.02562 * 15 13 12 18 18 H 1.48492 * 109.47519 * 89.99668 * 17 15 13 19 19 H 1.48504 * 109.47326 * 209.99955 * 17 15 13 20 20 H 1.48499 * 109.46980 * 329.99568 * 17 15 13 21 21 C 1.46950 * 110.88161 * 59.31969 * 11 10 9 22 22 C 1.46958 * 111.00178 * 61.59277 * 8 7 6 23 23 C 1.38341 * 120.74013 * 180.25455 * 2 1 3 24 24 N 1.48009 * 120.43313 * 359.97438 * 23 2 1 25 25 O 1.21797 * 120.00205 * 268.44864 * 24 23 2 26 26 O 1.21800 * 119.99500 * 88.45848 * 24 23 2 27 27 H 1.08999 * 109.46850 * 90.00135 * 1 2 3 28 28 H 1.08999 * 109.46805 * 209.99839 * 1 2 3 29 29 H 1.08997 * 109.47003 * 329.99887 * 1 2 3 30 30 H 1.08004 * 120.34214 * 0.02562 * 3 2 1 31 31 H 1.09001 * 109.48940 * 63.22076 * 9 8 7 32 32 H 1.08999 * 109.50966 * 303.16958 * 9 8 7 33 33 H 1.09000 * 109.49370 * 181.63312 * 10 9 8 34 34 H 1.09001 * 109.48669 * 61.56650 * 10 9 8 35 35 H 1.08997 * 109.47675 * 289.99916 * 12 11 10 36 36 H 1.09002 * 109.47554 * 49.99999 * 12 11 10 37 37 H 0.96998 * 119.99675 * 180.02562 * 16 15 13 38 38 H 1.08990 * 109.49377 * 60.64346 * 21 11 10 39 39 H 1.09005 * 109.48712 * 180.71886 * 21 11 10 40 40 H 1.09001 * 109.48945 * 296.78055 * 22 8 7 41 41 H 1.08997 * 109.48778 * 56.82774 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2166 1.1932 0.0000 4 6 3.5981 1.1589 0.0005 5 17 4.4924 2.6467 -0.0001 6 7 4.2464 0.0084 0.0016 7 6 3.6047 -1.1499 0.0016 8 7 4.3269 -2.3374 0.0021 9 6 5.1476 -2.4552 -1.2112 10 6 5.8638 -3.8077 -1.2102 11 7 6.6947 -3.9183 -0.0031 12 6 7.4580 -5.1734 -0.0026 13 6 8.4728 -5.1437 1.1111 14 1 8.5438 -4.2788 1.7540 15 6 9.3105 -6.2207 1.3094 16 7 10.1958 -6.1949 2.2817 17 14 9.1881 -7.7164 0.1971 18 1 10.0937 -7.5431 -0.9669 19 1 9.5832 -8.9307 0.9552 20 1 7.7901 -7.8645 -0.2811 21 6 5.8740 -3.8007 1.2102 22 6 5.1578 -2.4480 1.2092 23 6 2.2142 -1.1890 -0.0053 24 7 1.5006 -2.4857 -0.0105 25 8 1.2323 -3.0374 1.0417 26 8 1.1817 -3.0010 -1.0670 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5138 30 1 1.6943 2.1385 0.0004 31 1 5.8854 -1.6531 -1.2305 32 1 4.5087 -2.3827 -2.0913 33 1 6.4958 -3.8854 -2.0950 34 1 5.1259 -4.6099 -1.2185 35 1 6.7783 -6.0121 0.1475 36 1 7.9704 -5.2875 -0.9579 37 1 10.7854 -6.9525 2.4210 38 1 5.1362 -4.6027 1.2294 39 1 6.5133 -3.8729 2.0901 40 1 5.8958 -1.6458 1.2175 41 1 4.5260 -2.3700 2.0940 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165056306.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:19 Heat of formation + Delta-G solvation = 57.579717 kcal Electronic energy + Delta-G solvation = -27729.940082 eV Core-core repulsion = 23674.977299 eV Total energy + Delta-G solvation = -4054.962783 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.54145 -41.13905 -38.96595 -37.36298 -36.57550 -35.87088 -34.52729 -32.61935 -31.51057 -30.77917 -29.14561 -28.55485 -26.63159 -25.31850 -23.43659 -23.17906 -22.63216 -21.15762 -19.74718 -19.39436 -18.87682 -18.53469 -17.74972 -16.85154 -16.67257 -16.03068 -15.80301 -14.88573 -14.73505 -14.53153 -14.43887 -14.11110 -13.94371 -13.90739 -13.74097 -13.18486 -13.02599 -12.39031 -12.29868 -12.16787 -11.96336 -11.73977 -11.69789 -11.47663 -11.19599 -11.16280 -11.00907 -10.88378 -10.66182 -10.53657 -10.49905 -10.21264 -9.88495 -9.78047 -9.31902 -9.06972 -8.58466 -7.48073 -6.07159 -4.05194 -0.25492 0.10580 0.40564 0.89091 1.24351 2.50454 2.91813 3.28294 3.36016 3.38377 3.50429 3.87959 3.91268 4.07673 4.38109 4.40846 4.58912 4.68680 4.73647 4.89946 4.99172 5.10934 5.21118 5.26783 5.28346 5.37175 5.53733 5.69008 5.73820 5.84885 6.09359 6.13684 6.32411 6.47974 6.56453 6.68646 6.76821 6.82402 6.94148 7.46014 7.53248 7.80469 7.94113 8.61216 8.99935 9.54196 11.05734 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.014725 B = 0.003180 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.056458 B = 8804.179836 C =10046.756081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.025 3.975 3 C -0.161 4.161 4 C 0.222 3.778 5 Cl -0.003 7.003 6 N -0.486 5.486 7 C 0.386 3.614 8 N -0.500 5.500 9 C 0.065 3.935 10 C 0.055 3.945 11 N -0.528 5.528 12 C 0.163 3.837 13 C -0.511 4.511 14 H 0.080 0.920 15 C 0.069 3.931 16 N -0.899 5.899 17 Si 0.875 3.125 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.267 1.267 21 C 0.068 3.932 22 C 0.062 3.938 23 C -0.064 4.064 24 N 0.039 4.961 25 O -0.129 6.129 26 O -0.133 6.133 27 H 0.099 0.901 28 H 0.079 0.921 29 H 0.096 0.904 30 H 0.168 0.832 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.036 0.964 35 H -0.008 1.008 36 H 0.026 0.974 37 H 0.264 0.736 38 H 0.035 0.965 39 H 0.102 0.898 40 H 0.066 0.934 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.826 17.948 -6.142 28.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.016 3.984 3 C -0.182 4.182 4 C 0.056 3.944 5 Cl 0.026 6.974 6 N -0.202 5.202 7 C 0.156 3.844 8 N -0.225 5.225 9 C -0.061 4.061 10 C -0.074 4.074 11 N -0.253 5.253 12 C 0.037 3.963 13 C -0.550 4.550 14 H 0.098 0.902 15 C -0.132 4.132 16 N -0.538 5.538 17 Si 0.702 3.298 18 H -0.202 1.202 19 H -0.211 1.211 20 H -0.192 1.192 21 C -0.060 4.060 22 C -0.063 4.063 23 C -0.149 4.149 24 N 0.571 4.429 25 O -0.353 6.353 26 O -0.356 6.356 27 H 0.118 0.882 28 H 0.098 0.902 29 H 0.115 0.885 30 H 0.185 0.815 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.054 0.946 35 H 0.010 0.990 36 H 0.044 0.956 37 H 0.074 0.926 38 H 0.053 0.947 39 H 0.120 0.880 40 H 0.084 0.916 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -19.269 18.623 -6.051 27.472 hybrid contribution -0.741 -1.015 -0.543 1.369 sum -20.010 17.608 -6.594 27.458 Atomic orbital electron populations 1.21089 0.87444 1.05373 1.04915 1.19983 0.98175 0.89382 0.90888 1.21705 0.92184 0.99225 1.05099 1.21900 0.89281 0.89002 0.94185 1.98465 1.76225 1.26922 1.95757 1.67694 1.40252 0.97109 1.15107 1.19494 0.87913 0.88593 0.88422 1.60732 1.30784 1.24224 1.06765 1.22323 0.94846 0.99881 0.89014 1.22123 0.95374 0.94305 0.95621 1.62145 1.23888 1.39283 0.99934 1.20168 0.93017 0.84932 0.98169 1.20995 1.16217 1.03794 1.13959 0.90154 1.24890 0.94971 0.98183 0.95191 1.69894 1.21396 1.31451 1.31054 0.86864 0.78897 0.82931 0.81102 1.20152 1.21150 1.19196 1.22049 0.94980 0.93122 0.95861 1.22448 0.94609 1.00510 0.88762 1.21628 0.92292 0.85013 1.15949 1.42910 0.98328 1.01120 1.00538 1.94585 1.56532 1.63121 1.21052 1.94566 1.54740 1.65823 1.20479 0.88240 0.90235 0.88488 0.81466 0.91572 0.90704 0.89939 0.94569 0.99049 0.95616 0.92617 0.94703 0.87955 0.91554 0.90524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.72 9.83 36.01 0.35 -0.36 16 2 C 0.02 0.21 5.91 -104.37 -0.62 -0.41 16 3 C -0.16 -1.15 9.57 -39.38 -0.38 -1.53 16 4 C 0.22 2.19 7.27 -17.47 -0.13 2.06 16 5 Cl 0.00 -0.02 29.10 -51.86 -1.51 -1.53 16 6 N -0.49 -6.24 9.62 -9.56 -0.09 -6.33 16 7 C 0.39 5.24 5.33 -155.03 -0.83 4.41 16 8 N -0.50 -7.70 4.40 -173.04 -0.76 -8.47 16 9 C 0.07 0.99 5.44 -3.77 -0.02 0.97 16 10 C 0.05 0.95 5.61 -3.77 -0.02 0.93 16 11 N -0.53 -11.00 4.70 -235.91 -1.11 -12.11 16 12 C 0.16 3.94 3.79 -4.98 -0.02 3.92 16 13 C -0.51 -14.39 9.03 -34.44 -0.31 -14.70 16 14 H 0.08 2.45 7.38 -52.48 -0.39 2.06 16 15 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 16 N -0.90 -27.42 13.96 55.43 0.77 -26.65 16 17 Si 0.87 21.49 27.47 -169.99 -4.67 16.82 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 21 C 0.07 1.32 5.43 -3.77 -0.02 1.30 16 22 C 0.06 1.02 5.44 -3.76 -0.02 1.00 16 23 C -0.06 -0.77 6.17 -79.59 -0.49 -1.26 16 24 N 0.04 0.54 3.12 34.14 0.11 0.65 16 25 O -0.13 -1.91 19.25 -29.46 -0.57 -2.48 16 26 O -0.13 -1.92 19.25 -29.46 -0.57 -2.49 16 27 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.08 0.54 7.53 -51.93 -0.39 0.15 16 29 H 0.10 0.27 8.10 -51.93 -0.42 -0.15 16 30 H 0.17 0.58 8.06 -52.48 -0.42 0.16 16 31 H 0.07 1.05 7.97 -51.93 -0.41 0.63 16 32 H 0.07 1.02 8.13 -51.93 -0.42 0.60 16 33 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 34 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 35 H -0.01 -0.20 7.18 -51.93 -0.37 -0.57 16 36 H 0.03 0.62 7.45 -51.93 -0.39 0.23 16 37 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 38 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.10 2.16 6.79 -51.93 -0.35 1.81 16 40 H 0.07 1.14 7.96 -51.93 -0.41 0.72 16 41 H 0.08 1.16 8.13 -51.93 -0.42 0.74 16 LS Contribution 361.39 15.07 5.45 5.45 Total: -1.00 -31.92 361.39 -10.80 -42.72 By element: Atomic # 1 Polarization: 1.45 SS G_CDS: -5.26 Total: -3.81 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: -2.59 Total: -1.76 kcal Atomic # 7 Polarization: -51.83 SS G_CDS: -1.08 Total: -52.91 kcal Atomic # 8 Polarization: -3.84 SS G_CDS: -1.13 Total: -4.97 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Atomic # 17 Polarization: -0.02 SS G_CDS: -1.51 Total: -1.53 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.92 -10.80 -42.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165056306.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.299 kcal (2) G-P(sol) polarization free energy of solvation -31.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds