Wall clock time and date at job start Sat Apr 11 2020 05:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38819 * 120.73899 * 2 1 4 4 C 1.38193 * 119.31746 * 179.97438 * 3 2 1 5 5 Cl 1.73596 * 119.58728 * 179.97438 * 4 3 2 6 6 N 1.32061 * 120.82282 * 359.97438 * 4 3 2 7 7 C 1.32418 * 121.60797 * 0.02597 * 6 4 3 8 8 N 1.38994 * 119.69974 * 179.97438 * 7 6 4 9 9 C 1.46958 * 110.99847 * 297.79362 * 8 7 6 10 10 C 1.53048 * 109.36713 * 183.18769 * 9 8 7 11 11 N 1.46959 * 109.36488 * 301.60407 * 10 9 8 12 12 C 1.46899 * 110.99806 * 183.18499 * 11 10 9 13 13 C 1.50701 * 109.47105 * 169.99641 * 12 11 10 14 14 H 1.08003 * 119.99746 * 359.97438 * 13 12 11 15 15 C 1.37872 * 120.00188 * 179.97438 * 13 12 11 16 16 N 1.31523 * 120.00060 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 120.00159 * 0.02562 * 15 13 12 18 18 H 1.48492 * 109.47519 * 89.99668 * 17 15 13 19 19 H 1.48504 * 109.47326 * 209.99955 * 17 15 13 20 20 H 1.48499 * 109.46980 * 329.99568 * 17 15 13 21 21 C 1.46950 * 110.88161 * 59.31969 * 11 10 9 22 22 C 1.46958 * 111.00178 * 61.59277 * 8 7 6 23 23 C 1.38341 * 120.74013 * 180.25455 * 2 1 3 24 24 N 1.48009 * 120.43313 * 359.97438 * 23 2 1 25 25 O 1.21797 * 120.00205 * 268.44864 * 24 23 2 26 26 O 1.21800 * 119.99500 * 88.45848 * 24 23 2 27 27 H 1.08999 * 109.46850 * 90.00135 * 1 2 3 28 28 H 1.08999 * 109.46805 * 209.99839 * 1 2 3 29 29 H 1.08997 * 109.47003 * 329.99887 * 1 2 3 30 30 H 1.08004 * 120.34214 * 0.02562 * 3 2 1 31 31 H 1.09001 * 109.48940 * 63.22076 * 9 8 7 32 32 H 1.08999 * 109.50966 * 303.16958 * 9 8 7 33 33 H 1.09000 * 109.49370 * 181.63312 * 10 9 8 34 34 H 1.09001 * 109.48669 * 61.56650 * 10 9 8 35 35 H 1.08997 * 109.47675 * 289.99916 * 12 11 10 36 36 H 1.09002 * 109.47554 * 49.99999 * 12 11 10 37 37 H 0.96998 * 119.99675 * 180.02562 * 16 15 13 38 38 H 1.08990 * 109.49377 * 60.64346 * 21 11 10 39 39 H 1.09005 * 109.48712 * 180.71886 * 21 11 10 40 40 H 1.09001 * 109.48945 * 296.78055 * 22 8 7 41 41 H 1.08997 * 109.48778 * 56.82774 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2166 1.1932 0.0000 4 6 3.5981 1.1589 0.0005 5 17 4.4924 2.6467 -0.0001 6 7 4.2464 0.0084 0.0016 7 6 3.6047 -1.1499 0.0016 8 7 4.3269 -2.3374 0.0021 9 6 5.1476 -2.4552 -1.2112 10 6 5.8638 -3.8077 -1.2102 11 7 6.6947 -3.9183 -0.0031 12 6 7.4580 -5.1734 -0.0026 13 6 8.4728 -5.1437 1.1111 14 1 8.5438 -4.2788 1.7540 15 6 9.3105 -6.2207 1.3094 16 7 10.1958 -6.1949 2.2817 17 14 9.1881 -7.7164 0.1971 18 1 10.0937 -7.5431 -0.9669 19 1 9.5832 -8.9307 0.9552 20 1 7.7901 -7.8645 -0.2811 21 6 5.8740 -3.8007 1.2102 22 6 5.1578 -2.4480 1.2092 23 6 2.2142 -1.1890 -0.0053 24 7 1.5006 -2.4857 -0.0105 25 8 1.2323 -3.0374 1.0417 26 8 1.1817 -3.0010 -1.0670 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5138 30 1 1.6943 2.1385 0.0004 31 1 5.8854 -1.6531 -1.2305 32 1 4.5087 -2.3827 -2.0913 33 1 6.4958 -3.8854 -2.0950 34 1 5.1259 -4.6099 -1.2185 35 1 6.7783 -6.0121 0.1475 36 1 7.9704 -5.2875 -0.9579 37 1 10.7854 -6.9525 2.4210 38 1 5.1362 -4.6027 1.2294 39 1 6.5133 -3.8729 2.0901 40 1 5.8958 -1.6458 1.2175 41 1 4.5260 -2.3700 2.0940 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165056306.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:18 Heat of formation + Delta-G solvation = 36.505413 kcal Electronic energy + Delta-G solvation = -27730.853932 eV Core-core repulsion = 23674.977299 eV Total energy + Delta-G solvation = -4055.876633 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -43.51896 -42.09429 -40.22099 -38.11913 -37.64417 -37.16103 -35.45293 -34.61379 -32.65485 -32.18182 -30.28167 -29.71426 -27.81693 -26.70420 -24.85412 -24.07926 -23.75952 -22.85293 -20.99976 -20.47231 -19.92172 -19.45967 -19.03593 -18.68712 -17.65943 -16.99437 -16.85406 -16.50755 -16.10095 -15.75856 -15.70938 -15.43897 -15.09710 -14.90799 -14.52478 -14.46097 -14.24635 -13.70310 -13.49927 -13.39105 -13.13062 -12.91909 -12.80952 -12.67524 -12.50032 -12.47211 -12.42674 -12.30761 -12.27039 -11.94727 -11.86484 -11.49211 -11.37644 -11.28545 -10.79784 -10.57115 -10.27949 -9.18034 -8.30103 -6.34046 -1.07472 -0.69447 -0.63457 0.03698 0.41791 1.34292 1.35992 1.46484 1.70747 1.91335 2.33111 2.77532 2.99525 3.05990 3.07484 3.19144 3.28474 3.68386 3.78548 3.89488 4.00128 4.01397 4.15431 4.24673 4.37197 4.37770 4.50078 4.53460 4.56236 4.71399 4.75536 4.82323 4.86833 4.93627 5.01500 5.07608 5.33089 5.48659 5.54577 5.90241 5.93038 6.20103 6.34440 6.55133 6.71283 7.29592 8.86266 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.014725 B = 0.003180 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.056458 B = 8804.179836 C =10046.756081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.034 3.966 3 C -0.131 4.131 4 C 0.210 3.790 5 Cl 0.007 6.993 6 N -0.510 5.510 7 C 0.365 3.635 8 N -0.507 5.507 9 C 0.075 3.925 10 C 0.056 3.944 11 N -0.541 5.541 12 C 0.173 3.827 13 C -0.518 4.518 14 H 0.039 0.961 15 C 0.010 3.990 16 N -0.946 5.946 17 Si 0.947 3.053 18 H -0.263 1.263 19 H -0.281 1.281 20 H -0.254 1.254 21 C 0.074 3.926 22 C 0.079 3.921 23 C -0.075 4.075 24 N 0.043 4.957 25 O -0.157 6.157 26 O -0.137 6.137 27 H 0.116 0.884 28 H 0.063 0.937 29 H 0.133 0.867 30 H 0.215 0.785 31 H 0.058 0.942 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.034 0.966 35 H -0.012 1.012 36 H 0.034 0.966 37 H 0.267 0.733 38 H 0.028 0.972 39 H 0.073 0.927 40 H 0.055 0.945 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.298 19.584 -8.075 31.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.024 3.976 3 C -0.151 4.151 4 C 0.045 3.955 5 Cl 0.036 6.964 6 N -0.227 5.227 7 C 0.134 3.866 8 N -0.232 5.232 9 C -0.051 4.051 10 C -0.073 4.073 11 N -0.266 5.266 12 C 0.047 3.953 13 C -0.556 4.556 14 H 0.057 0.943 15 C -0.187 4.187 16 N -0.587 5.587 17 Si 0.770 3.230 18 H -0.188 1.188 19 H -0.207 1.207 20 H -0.177 1.177 21 C -0.054 4.054 22 C -0.047 4.047 23 C -0.160 4.160 24 N 0.573 4.427 25 O -0.377 6.377 26 O -0.363 6.363 27 H 0.134 0.866 28 H 0.082 0.918 29 H 0.151 0.849 30 H 0.232 0.768 31 H 0.076 0.924 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.052 0.948 35 H 0.006 0.994 36 H 0.052 0.948 37 H 0.076 0.924 38 H 0.046 0.954 39 H 0.091 0.909 40 H 0.073 0.927 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -21.770 20.283 -7.961 30.801 hybrid contribution -0.013 -1.304 0.080 1.306 sum -21.783 18.979 -7.881 29.947 Atomic orbital electron populations 1.21263 0.84910 1.06378 1.06208 1.20447 0.99783 0.88174 0.89155 1.22186 0.90923 1.00486 1.01525 1.22236 0.90519 0.88452 0.94264 1.98472 1.76357 1.25875 1.95679 1.67550 1.41214 0.97795 1.16100 1.19253 0.88053 0.88196 0.91068 1.60594 1.30220 1.26396 1.05981 1.22204 0.94916 0.98013 0.89969 1.22204 0.95184 0.95632 0.94243 1.62044 1.25307 1.37450 1.01779 1.19926 0.92360 0.86385 0.96673 1.21204 1.17311 1.02522 1.14543 0.94292 1.25817 0.94440 1.01683 0.96789 1.70046 1.22648 1.32788 1.33176 0.85720 0.79728 0.78424 0.79110 1.18790 1.20707 1.17743 1.21894 0.94201 0.94915 0.94406 1.22132 0.94476 0.97883 0.90201 1.21768 0.91829 0.84933 1.17519 1.43154 0.97892 1.01615 1.00061 1.94582 1.57726 1.64085 1.21278 1.94542 1.54825 1.66386 1.20539 0.86571 0.91807 0.84904 0.76825 0.92369 0.88643 0.88616 0.94785 0.99440 0.94798 0.92365 0.95372 0.90901 0.92669 0.89613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.91 9.83 71.24 0.70 -0.21 16 2 C 0.03 0.45 5.91 -19.70 -0.12 0.34 16 3 C -0.13 -1.32 9.57 22.40 0.21 -1.11 16 4 C 0.21 3.60 7.27 84.65 0.62 4.22 16 5 Cl 0.01 0.11 29.10 -2.72 -0.08 0.03 16 6 N -0.51 -12.49 9.62 -184.15 -1.77 -14.26 16 7 C 0.36 9.55 5.33 133.05 0.71 10.26 16 8 N -0.51 -15.55 4.40 -701.39 -3.09 -18.64 16 9 C 0.07 2.23 5.44 86.31 0.47 2.70 16 10 C 0.06 1.90 5.61 86.31 0.48 2.39 16 11 N -0.54 -23.05 4.70 -900.29 -4.23 -27.28 16 12 C 0.17 8.46 3.79 85.56 0.32 8.79 16 13 C -0.52 -30.24 9.03 25.60 0.23 -30.01 16 14 H 0.04 2.53 7.38 -2.91 -0.02 2.51 16 15 C 0.01 0.61 5.47 84.65 0.46 1.07 16 16 N -0.95 -59.54 13.96 21.45 0.30 -59.24 16 17 Si 0.95 44.52 27.47 68.60 1.88 46.41 16 18 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 19 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 20 H -0.25 -11.28 6.54 99.48 0.65 -10.63 16 21 C 0.07 3.02 5.43 86.31 0.47 3.49 16 22 C 0.08 2.68 5.44 86.31 0.47 3.15 16 23 C -0.08 -1.70 6.17 36.61 0.23 -1.47 16 24 N 0.04 1.16 3.12 -45.92 -0.14 1.02 16 25 O -0.16 -4.68 19.25 18.89 0.36 -4.32 16 26 O -0.14 -3.85 19.25 18.89 0.36 -3.49 16 27 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.06 0.71 7.53 -2.39 -0.02 0.69 16 29 H 0.13 0.00 8.10 -2.39 -0.02 -0.02 16 30 H 0.21 0.14 8.06 -2.91 -0.02 0.12 16 31 H 0.06 1.82 7.97 -2.39 -0.02 1.81 16 32 H 0.10 2.45 8.13 -2.39 -0.02 2.43 16 33 H 0.10 2.99 8.07 -2.39 -0.02 2.97 16 34 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 35 H -0.01 -0.60 7.18 -2.39 -0.02 -0.61 16 36 H 0.03 1.60 7.45 -2.39 -0.02 1.58 16 37 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 38 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.07 3.33 6.79 -2.38 -0.02 3.32 16 40 H 0.05 1.97 7.96 -2.39 -0.02 1.95 16 41 H 0.09 2.69 8.13 -2.39 -0.02 2.67 16 Total: -1.00 -72.91 361.39 -0.14 -73.05 By element: Atomic # 1 Polarization: 2.13 SS G_CDS: 1.01 Total: 3.14 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: 5.26 Total: 3.59 kcal Atomic # 7 Polarization: -109.47 SS G_CDS: -8.93 Total: -118.40 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: 0.73 Total: -7.80 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.88 Total: 46.41 kcal Atomic # 17 Polarization: 0.11 SS G_CDS: -0.08 Total: 0.03 kcal Total: -72.91 -0.14 -73.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165056306.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.551 kcal (2) G-P(sol) polarization free energy of solvation -72.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds