Wall clock time and date at job start Sat Apr 11 2020 05:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86793 * 120.00027 * 2 1 4 4 H 1.48505 * 109.46964 * 269.99680 * 3 2 1 5 5 H 1.48497 * 109.47405 * 29.99478 * 3 2 1 6 6 H 1.48493 * 109.47447 * 149.99817 * 3 2 1 7 7 C 1.38810 * 119.99778 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00128 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00348 * 0.02562 * 7 2 1 10 10 C 1.46506 * 120.00268 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47154 * 174.36755 * 10 9 7 12 12 C 1.53002 * 115.55411 * 294.95066 * 11 10 9 13 13 C 1.53001 * 109.47301 * 279.32678 * 12 11 10 14 14 N 1.46500 * 109.47150 * 175.45357 * 13 12 11 15 15 C 1.34771 * 119.99785 * 180.02562 * 14 13 12 16 16 O 1.21585 * 120.00020 * 359.72757 * 15 14 13 17 17 C 1.47626 * 120.00088 * 180.02562 * 15 14 13 18 18 C 1.39699 * 120.15394 * 359.44587 * 17 15 14 19 19 C 1.37796 * 119.89504 * 179.76973 * 18 17 15 20 20 C 1.38612 * 120.19978 * 0.50513 * 19 18 17 21 21 Cl 1.73605 * 119.84171 * 179.76230 * 20 19 18 22 22 C 1.38354 * 120.31756 * 359.75022 * 20 19 18 23 23 C 1.38257 * 120.09883 * 359.97438 * 22 20 19 24 24 F 1.35104 * 120.10253 * 179.97438 * 23 22 20 25 25 C 1.53003 * 117.51823 * 80.65313 * 11 10 9 26 26 C 1.52998 * 60.00239 * 107.48114 * 25 11 10 27 27 H 0.96992 * 119.99923 * 0.02562 * 1 2 3 28 28 H 0.97000 * 119.99752 * 359.97438 * 9 7 2 29 29 H 1.08997 * 109.46826 * 54.36758 * 10 9 7 30 30 H 1.08997 * 109.47088 * 294.37156 * 10 9 7 31 31 H 1.08995 * 109.47470 * 159.32234 * 12 11 10 32 32 H 1.08998 * 109.46724 * 39.32555 * 12 11 10 33 33 H 1.09004 * 109.47033 * 55.45231 * 13 12 11 34 34 H 1.09002 * 109.46676 * 295.45605 * 13 12 11 35 35 H 0.96994 * 120.00189 * 0.02562 * 14 13 12 36 36 H 1.08000 * 120.05202 * 0.02562 * 18 17 15 37 37 H 1.07999 * 119.89629 * 180.25594 * 19 18 17 38 38 H 1.07997 * 119.94974 * 180.02562 * 22 20 19 39 39 H 1.08997 * 117.49881 * 214.96994 * 25 11 10 40 40 H 1.09000 * 117.49887 * 359.97438 * 25 11 10 41 41 H 1.08995 * 117.49760 * 252.51855 * 26 25 11 42 42 H 1.08996 * 117.49824 * 107.48728 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0699 -4.8162 0.1421 12 6 0.3082 -4.8761 1.4677 13 6 1.1962 -5.5143 2.5378 14 7 0.5088 -5.4732 3.8309 15 6 1.1050 -5.9819 4.9274 16 8 2.2112 -6.4792 4.8424 17 6 0.4122 -5.9410 6.2303 18 6 -0.8566 -5.3655 6.3327 19 6 -1.5005 -5.3345 7.5506 20 6 -0.8886 -5.8632 8.6764 21 17 -1.7057 -5.8137 10.2073 22 6 0.3700 -6.4305 8.5858 23 6 1.0253 -6.4735 7.3691 24 9 2.2546 -7.0269 7.2807 25 6 0.3323 -5.2742 -1.1177 26 6 1.4398 -6.1448 -0.5207 27 1 -0.4850 0.8400 -0.0004 28 1 0.3556 -2.3880 0.0005 29 1 2.7582 -3.6721 0.8358 30 1 2.6070 -3.7595 -0.9355 31 1 -0.5948 -5.4733 1.3413 32 1 0.0360 -3.8667 1.7761 33 1 2.1343 -4.9636 2.6073 34 1 1.4021 -6.5502 2.2685 35 1 -0.3753 -5.0800 3.8979 36 1 -1.3339 -4.9493 5.4578 37 1 -2.4831 -4.8934 7.6289 38 1 0.8411 -6.8410 9.4667 39 1 -0.6955 -5.6181 -1.0021 40 1 0.5507 -4.7493 -2.0477 41 1 2.3870 -6.1925 -1.0578 42 1 1.1406 -7.0613 -0.0123 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166042293.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:24 Heat of formation + Delta-G solvation = -49.505513 kcal Electronic energy + Delta-G solvation = -26051.333673 eV Core-core repulsion = 21971.807364 eV Total energy + Delta-G solvation = -4079.526308 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.09258 -41.27290 -39.83726 -39.34585 -37.56515 -36.19941 -35.76139 -32.83919 -32.76457 -31.78132 -30.70623 -27.81596 -25.71430 -24.62577 -24.48579 -23.70497 -22.88990 -21.86294 -20.13758 -19.36578 -18.96257 -18.34022 -17.92419 -17.10197 -16.88910 -16.70101 -16.50425 -16.46982 -16.07585 -15.80325 -15.52773 -15.13624 -14.83021 -14.67754 -14.61881 -14.35215 -14.16355 -13.82490 -13.60616 -13.18402 -13.03424 -12.79827 -12.74795 -12.59522 -12.43814 -12.26497 -12.14390 -12.13028 -11.92662 -11.83978 -11.21359 -11.06618 -10.88806 -10.56304 -10.33436 -10.18074 -9.87975 -8.96140 -7.94024 -5.21104 -0.66853 -0.09950 0.82667 1.47326 1.47845 1.54144 1.56395 1.95460 2.41538 2.54820 2.90628 2.98011 3.38772 3.43078 3.47283 3.78120 3.84082 3.85970 3.89513 3.98520 4.08667 4.24427 4.26925 4.41663 4.49116 4.55758 4.66684 4.76251 4.84756 4.85745 4.90898 4.94529 4.98246 5.09834 5.16721 5.27884 5.34257 5.35865 5.39803 5.41865 5.49996 6.28798 6.38333 7.04890 7.36199 8.11891 8.38610 9.29036 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.010703 B = 0.002431 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2615.373370 B =11516.605235 C =12931.838157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.069 4.069 3 Si 0.967 3.033 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.275 1.275 7 C -0.246 4.246 8 H 0.068 0.932 9 N -0.734 5.734 10 C 0.187 3.813 11 C -0.139 4.139 12 C -0.077 4.077 13 C 0.133 3.867 14 N -0.706 5.706 15 C 0.551 3.449 16 O -0.572 6.572 17 C -0.183 4.183 18 C -0.034 4.034 19 C -0.117 4.117 20 C 0.015 3.985 21 Cl -0.039 7.039 22 C -0.155 4.155 23 C 0.147 3.853 24 F -0.129 7.129 25 C -0.162 4.162 26 C -0.153 4.153 27 H 0.252 0.748 28 H 0.378 0.622 29 H 0.016 0.984 30 H 0.011 0.989 31 H 0.094 0.906 32 H 0.063 0.937 33 H 0.044 0.956 34 H 0.075 0.925 35 H 0.415 0.585 36 H 0.175 0.825 37 H 0.179 0.821 38 H 0.167 0.833 39 H 0.110 0.890 40 H 0.079 0.921 41 H 0.094 0.906 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.994 -16.538 16.609 24.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.262 4.262 3 Si 0.797 3.203 4 H -0.215 1.215 5 H -0.219 1.219 6 H -0.200 1.200 7 C -0.377 4.377 8 H 0.086 0.914 9 N -0.377 5.377 10 C 0.060 3.940 11 C -0.140 4.140 12 C -0.114 4.114 13 C 0.009 3.991 14 N -0.358 5.358 15 C 0.338 3.662 16 O -0.453 6.453 17 C -0.187 4.187 18 C -0.052 4.052 19 C -0.135 4.135 20 C -0.013 4.013 21 Cl -0.010 7.010 22 C -0.174 4.174 23 C 0.126 3.874 24 F -0.107 7.107 25 C -0.199 4.199 26 C -0.190 4.190 27 H 0.060 0.940 28 H 0.210 0.790 29 H 0.034 0.966 30 H 0.029 0.971 31 H 0.113 0.887 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.093 0.907 35 H 0.253 0.747 36 H 0.193 0.807 37 H 0.196 0.804 38 H 0.184 0.816 39 H 0.129 0.871 40 H 0.097 0.903 41 H 0.112 0.888 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -7.070 -16.796 16.655 24.687 hybrid contribution 0.347 1.254 -0.033 1.301 sum -6.723 -15.542 16.622 23.728 Atomic orbital electron populations 1.69787 1.06240 1.25977 1.59383 1.25442 0.96405 1.00611 1.03749 0.85233 0.77706 0.79997 0.77387 1.21513 1.21859 1.20010 1.19571 0.91259 0.85604 1.41316 0.91446 1.42408 1.05663 1.00492 1.89104 1.20239 0.92731 0.84250 0.96772 1.21399 1.02256 0.96011 0.94336 1.21112 0.97601 1.01360 0.91367 1.21245 0.95448 1.01078 0.81290 1.45786 1.21818 1.60485 1.07739 1.18319 0.85136 0.78139 0.84566 1.90831 1.21265 1.46729 1.86475 1.20175 0.98401 1.07551 0.92572 1.21513 0.90678 0.93405 0.99640 1.21437 1.02454 0.99879 0.89737 1.20990 0.92741 0.98635 0.88888 1.98423 1.77837 1.96765 1.27984 1.21079 0.95211 1.03843 0.97251 1.17760 0.80879 0.95075 0.93674 1.91576 1.39968 1.82359 1.96846 1.23011 0.97995 1.02946 0.95976 1.23061 0.99745 0.93451 1.02746 0.93954 0.78962 0.96560 0.97095 0.88745 0.91871 0.93782 0.90715 0.74672 0.80735 0.80356 0.81578 0.87130 0.90263 0.88790 0.86691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.46 13.06 21.65 0.28 -57.18 16 2 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 3 Si 0.97 46.09 29.55 68.60 2.03 48.11 16 4 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 5 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 6 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 7 C -0.25 -13.75 9.99 84.03 0.84 -12.91 16 8 H 0.07 3.71 7.83 -2.91 -0.02 3.69 16 9 N -0.73 -36.66 5.30 -343.46 -1.82 -38.48 16 10 C 0.19 7.52 6.10 86.38 0.53 8.05 16 11 C -0.14 -4.16 1.52 -52.18 -0.08 -4.24 16 12 C -0.08 -2.00 5.24 30.60 0.16 -1.84 16 13 C 0.13 3.53 5.51 86.38 0.48 4.00 16 14 N -0.71 -16.22 5.51 -466.17 -2.57 -18.79 16 15 C 0.55 15.23 7.77 86.72 0.67 15.90 16 16 O -0.57 -21.09 15.34 -3.98 -0.06 -21.15 16 17 C -0.18 -3.89 5.88 -20.05 -0.12 -4.01 16 18 C -0.03 -0.44 9.54 22.52 0.21 -0.22 16 19 C -0.12 -1.22 9.81 22.25 0.22 -1.00 16 20 C 0.01 0.19 6.32 22.39 0.14 0.33 16 21 Cl -0.04 -0.45 28.95 -2.72 -0.08 -0.53 16 22 C -0.15 -2.47 9.79 22.30 0.22 -2.25 16 23 C 0.15 3.29 7.28 22.67 0.17 3.45 16 24 F -0.13 -3.70 15.55 44.97 0.70 -3.00 16 25 C -0.16 -4.30 9.90 30.59 0.30 -4.00 16 26 C -0.15 -3.61 9.57 30.60 0.29 -3.32 16 27 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 28 H 0.38 19.67 7.46 -92.71 -0.69 18.98 16 29 H 0.02 0.69 7.69 -2.39 -0.02 0.68 16 30 H 0.01 0.46 8.09 -2.39 -0.02 0.44 16 31 H 0.09 1.89 7.94 -2.39 -0.02 1.87 16 32 H 0.06 1.99 7.64 -2.39 -0.02 1.97 16 33 H 0.04 1.45 7.69 -2.38 -0.02 1.44 16 34 H 0.07 1.89 7.80 -2.39 -0.02 1.88 16 35 H 0.42 6.68 6.50 -92.71 -0.60 6.08 16 36 H 0.18 1.24 6.40 -2.91 -0.02 1.22 16 37 H 0.18 0.84 8.06 -2.91 -0.02 0.81 16 38 H 0.17 2.07 8.06 -2.91 -0.02 2.05 16 39 H 0.11 2.46 8.08 -2.39 -0.02 2.44 16 40 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 41 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.11 2.19 7.98 -2.39 -0.02 2.17 16 Total: -1.00 -73.14 376.09 2.76 -70.38 By element: Atomic # 1 Polarization: 26.38 SS G_CDS: -0.22 Total: 26.15 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: 4.50 Total: -5.53 kcal Atomic # 7 Polarization: -110.34 SS G_CDS: -4.10 Total: -114.44 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: -0.06 Total: -21.15 kcal Atomic # 9 Polarization: -3.70 SS G_CDS: 0.70 Total: -3.00 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.11 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -0.08 Total: -0.53 kcal Total: -73.14 2.76 -70.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166042293.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.874 kcal (2) G-P(sol) polarization free energy of solvation -73.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds