Wall clock time and date at job start Sat Apr 11 2020 05:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86808 * 119.99657 * 2 1 4 4 H 1.48499 * 109.46865 * 264.62805 * 3 2 1 5 5 H 1.48503 * 109.47150 * 24.62428 * 3 2 1 6 6 H 1.48496 * 109.47376 * 144.62516 * 3 2 1 7 7 C 1.38804 * 120.00596 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00017 * 356.44534 * 7 2 1 9 9 N 1.36937 * 120.00308 * 176.44401 * 7 2 1 10 10 C 1.46503 * 119.99996 * 183.94768 * 9 7 2 11 11 C 1.52997 * 109.46966 * 185.12128 * 10 9 7 12 12 C 1.53005 * 115.55017 * 65.09401 * 11 10 9 13 13 C 1.53004 * 109.46999 * 39.98012 * 12 11 10 14 14 N 1.46503 * 109.46934 * 174.38921 * 13 12 11 15 15 C 1.34777 * 119.99611 * 184.42725 * 14 13 12 16 16 O 1.21570 * 120.00184 * 354.48347 * 15 14 13 17 17 C 1.47723 * 119.99634 * 174.48303 * 15 14 13 18 18 C 1.39665 * 120.11106 * 179.97438 * 17 15 14 19 19 C 1.37838 * 119.90215 * 180.02562 * 18 17 15 20 20 C 1.38637 * 120.13244 * 359.97438 * 19 18 17 21 21 F 1.35107 * 119.88078 * 180.02562 * 20 19 18 22 22 C 1.38739 * 120.23111 * 0.02612 * 20 19 18 23 23 Cl 1.73597 * 119.94982 * 180.02562 * 22 20 19 24 24 C 1.37963 * 120.09418 * 359.71370 * 22 20 19 25 25 C 1.52995 * 117.52170 * 210.79775 * 11 10 9 26 26 C 1.52996 * 60.00383 * 107.47939 * 25 11 10 27 27 H 0.96997 * 120.00607 * 359.97438 * 1 2 3 28 28 H 0.96995 * 119.99963 * 3.94729 * 9 7 2 29 29 H 1.08992 * 109.46942 * 65.12428 * 10 9 7 30 30 H 1.09002 * 109.47092 * 305.11845 * 10 9 7 31 31 H 1.08999 * 109.47068 * 279.97701 * 12 11 10 32 32 H 1.09003 * 109.46901 * 159.97350 * 12 11 10 33 33 H 1.08996 * 109.46902 * 54.38547 * 13 12 11 34 34 H 1.09003 * 109.46295 * 294.38545 * 13 12 11 35 35 H 0.96994 * 120.00205 * 4.42213 * 14 13 12 36 36 H 1.07999 * 120.05114 * 0.02586 * 18 17 15 37 37 H 1.07999 * 119.93260 * 180.02562 * 19 18 17 38 38 H 1.07997 * 120.06837 * 180.30167 * 24 22 20 39 39 H 1.08996 * 117.50276 * 214.97609 * 25 11 10 40 40 H 1.09002 * 117.49746 * 359.97438 * 25 11 10 41 41 H 1.08992 * 117.50352 * 252.51430 * 26 25 11 42 42 H 1.09005 * 117.49663 * 107.48699 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.6111 1.9810 -1.3939 5 1 1.3953 2.6829 0.5834 6 1 3.4863 1.4759 0.8105 7 6 2.0103 -1.2020 -0.0005 8 1 1.4720 -2.1366 0.0570 9 7 3.3777 -1.2030 -0.0741 10 6 4.1056 -2.4714 -0.1619 11 6 5.6103 -2.2010 -0.1034 12 6 6.1252 -1.6177 1.2141 13 6 5.4111 -2.2952 2.3854 14 7 5.9971 -1.8349 3.6468 15 6 5.5853 -2.3667 4.8147 16 8 4.6593 -3.1542 4.8312 17 6 6.2593 -1.9927 6.0749 18 6 5.8343 -2.5419 7.2866 19 6 6.4659 -2.1894 8.4600 20 6 7.5221 -1.2916 8.4393 21 9 8.1379 -0.9501 9.5923 22 6 7.9489 -0.7427 7.2387 23 17 9.2726 0.3803 7.2211 24 6 7.3270 -1.0929 6.0580 25 6 6.5312 -3.1616 -0.8583 26 6 6.2973 -1.7474 -1.3931 27 1 -0.4851 0.8400 0.0004 28 1 3.8644 -0.3640 -0.0680 29 1 3.8617 -2.9659 -1.1021 30 1 3.8191 -3.1132 0.6713 31 1 5.9277 -0.5461 1.2388 32 1 7.1984 -1.7913 1.2934 33 1 5.5256 -3.3761 2.3046 34 1 4.3518 -2.0392 2.3620 35 1 6.6814 -1.1475 3.6413 36 1 5.0119 -3.2417 7.3043 37 1 6.1379 -2.6141 9.3972 38 1 7.6627 -0.6691 5.1232 39 1 7.5037 -3.3782 -0.4165 40 1 6.0651 -3.9869 -1.3966 41 1 5.6773 -1.6420 -2.2833 42 1 7.1161 -1.0334 -1.3029 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166896786.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:31 Heat of formation + Delta-G solvation = -24.857001 kcal Electronic energy + Delta-G solvation = -26202.381362 eV Core-core repulsion = 22123.923893 eV Total energy + Delta-G solvation = -4078.457469 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.49726 -40.50127 -38.86335 -38.25095 -36.97966 -35.04463 -34.07521 -31.98762 -31.26667 -31.10158 -29.77440 -26.29271 -24.75971 -23.78244 -22.87339 -22.44753 -21.84543 -20.84676 -19.14594 -18.53892 -17.79683 -17.29785 -17.20523 -16.30453 -15.93923 -15.73813 -15.56879 -15.10229 -14.63565 -14.57627 -14.44012 -14.11685 -13.82899 -13.74554 -13.40043 -13.28452 -13.11875 -12.61479 -12.37707 -12.06497 -11.97834 -11.87495 -11.63337 -11.54565 -11.48512 -11.18422 -10.91737 -10.76458 -10.28513 -10.10664 -9.90962 -9.64578 -9.59979 -9.49904 -9.28573 -9.02539 -8.86700 -7.21360 -5.75216 -3.10443 0.10105 0.46483 1.45353 2.35083 2.94803 3.28257 3.36668 3.39200 3.44879 3.44953 3.89696 4.02228 4.23027 4.46679 4.60063 4.61807 4.79440 4.88379 4.89885 5.01323 5.13205 5.16150 5.23307 5.34965 5.50624 5.53684 5.59630 5.63905 5.68487 5.75751 5.84047 6.02701 6.05397 6.13440 6.22745 6.28140 6.31679 6.40255 6.64415 6.71041 7.33491 8.01774 8.04673 8.44107 9.23130 9.95138 10.15572 11.43340 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.011594 B = 0.002654 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.361673 B =10547.648446 C =11124.594456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.006 3.994 3 Si 0.882 3.118 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.242 4.242 8 H 0.090 0.910 9 N -0.749 5.749 10 C 0.190 3.810 11 C -0.128 4.128 12 C -0.087 4.087 13 C 0.118 3.882 14 N -0.722 5.722 15 C 0.556 3.444 16 O -0.522 6.522 17 C -0.126 4.126 18 C -0.026 4.026 19 C -0.147 4.147 20 C 0.131 3.869 21 F -0.122 7.122 22 C -0.083 4.083 23 Cl -0.043 7.043 24 C -0.052 4.052 25 C -0.171 4.171 26 C -0.170 4.170 27 H 0.259 0.741 28 H 0.360 0.640 29 H 0.026 0.974 30 H 0.038 0.962 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.396 0.604 36 H 0.156 0.844 37 H 0.154 0.846 38 H 0.147 0.853 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.098 0.902 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.866 -3.545 13.987 26.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.190 4.190 3 Si 0.712 3.288 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.372 4.372 8 H 0.108 0.892 9 N -0.394 5.394 10 C 0.063 3.937 11 C -0.129 4.129 12 C -0.124 4.124 13 C -0.005 4.005 14 N -0.373 5.373 15 C 0.342 3.658 16 O -0.399 6.399 17 C -0.130 4.130 18 C -0.045 4.045 19 C -0.166 4.166 20 C 0.110 3.890 21 F -0.100 7.100 22 C -0.110 4.110 23 Cl -0.014 7.014 24 C -0.071 4.071 25 C -0.209 4.209 26 C -0.207 4.207 27 H 0.069 0.931 28 H 0.192 0.808 29 H 0.044 0.956 30 H 0.056 0.944 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.111 0.889 35 H 0.231 0.769 36 H 0.174 0.826 37 H 0.172 0.828 38 H 0.165 0.835 39 H 0.108 0.892 40 H 0.113 0.887 41 H 0.116 0.884 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 21.091 -4.104 14.008 25.650 hybrid contribution 1.182 1.907 0.176 2.251 sum 22.273 -2.197 14.184 26.497 Atomic orbital electron populations 1.69699 1.05099 1.25791 1.57569 1.24650 0.95168 0.97098 1.02089 0.86604 0.79217 0.85152 0.77820 1.21048 1.21846 1.20491 1.19054 0.80726 0.94786 1.42651 0.89208 1.42554 1.04066 1.02146 1.90664 1.20219 0.85291 0.89399 0.98826 1.21648 0.95561 1.03754 0.91927 1.21206 0.98644 1.00451 0.92140 1.21590 0.99612 0.99058 0.80225 1.45951 1.42779 1.42052 1.06555 1.17932 0.83225 0.81490 0.83128 1.90847 1.27615 1.34798 1.86621 1.20089 0.97740 1.00102 0.95037 1.21321 0.97530 0.96053 0.89596 1.21173 0.95837 0.98912 1.00691 1.17660 0.93681 0.96856 0.80767 1.91570 1.81317 1.90602 1.46560 1.20833 0.96443 0.99821 0.93936 1.98410 1.44793 1.59417 1.98813 1.21135 0.93646 0.95265 0.97060 1.23027 1.00115 0.93685 1.04028 1.22969 1.02694 0.97160 0.97862 0.93082 0.80812 0.95637 0.94394 0.90935 0.91781 0.91018 0.88939 0.76930 0.82597 0.82840 0.83542 0.89155 0.88709 0.88386 0.89297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.50 13.97 55.49 0.78 -28.72 16 2 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 3 Si 0.88 22.02 27.54 -169.99 -4.68 17.34 16 4 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 6 H -0.28 -6.50 6.80 56.52 0.38 -6.12 16 7 C -0.24 -6.81 10.47 -15.06 -0.16 -6.97 16 8 H 0.09 2.73 8.06 -52.48 -0.42 2.30 16 9 N -0.75 -17.23 5.32 -59.91 -0.32 -17.55 16 10 C 0.19 3.54 5.34 -4.04 -0.02 3.51 16 11 C -0.13 -1.81 1.83 -154.51 -0.28 -2.09 16 12 C -0.09 -1.08 5.36 -26.73 -0.14 -1.22 16 13 C 0.12 1.64 4.62 -4.04 -0.02 1.62 16 14 N -0.72 -8.43 5.49 -61.29 -0.34 -8.76 16 15 C 0.56 7.31 7.76 -12.38 -0.10 7.22 16 16 O -0.52 -8.98 16.35 5.30 0.09 -8.89 16 17 C -0.13 -1.27 5.87 -104.97 -0.62 -1.88 16 18 C -0.03 -0.23 9.59 -39.20 -0.38 -0.61 16 19 C -0.15 -1.10 10.01 -39.58 -0.40 -1.50 16 20 C 0.13 1.13 7.28 -39.25 -0.29 0.85 16 21 F -0.12 -1.13 16.83 2.25 0.04 -1.09 16 22 C -0.08 -0.72 6.32 -39.50 -0.25 -0.97 16 23 Cl -0.04 -0.37 28.60 -51.86 -1.48 -1.85 16 24 C -0.05 -0.43 9.31 -39.16 -0.36 -0.79 16 25 C -0.17 -1.98 9.87 -26.74 -0.26 -2.24 16 26 C -0.17 -2.17 9.97 -26.73 -0.27 -2.44 16 27 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 28 H 0.36 8.08 5.70 -40.82 -0.23 7.85 16 29 H 0.03 0.49 8.09 -51.93 -0.42 0.07 16 30 H 0.04 0.73 6.80 -51.93 -0.35 0.38 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.06 0.62 7.95 -51.93 -0.41 0.21 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.09 1.67 7.15 -51.93 -0.37 1.30 16 35 H 0.40 3.37 6.53 -40.82 -0.27 3.10 16 36 H 0.16 1.34 7.65 -52.49 -0.40 0.94 16 37 H 0.15 0.77 8.06 -52.49 -0.42 0.35 16 38 H 0.15 0.91 6.42 -52.49 -0.34 0.57 16 39 H 0.09 0.89 8.08 -51.93 -0.42 0.47 16 40 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 42 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 373.74 15.07 5.63 5.63 Total: -1.00 -33.53 373.74 -9.25 -42.78 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -5.33 Total: 8.55 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: -3.64 Total: -7.44 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: 0.12 Total: -55.03 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.09 Total: -8.89 kcal Atomic # 9 Polarization: -1.13 SS G_CDS: 0.04 Total: -1.09 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.68 Total: 17.34 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -1.48 Total: -1.85 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.53 -9.25 -42.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166896786.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.927 kcal (2) G-P(sol) polarization free energy of solvation -33.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds