Wall clock time and date at job start Sat Apr 11 2020 05:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 120.00102 * 2 1 4 4 H 1.48499 * 109.47160 * 269.99632 * 3 2 1 5 5 H 1.48503 * 109.47274 * 29.99876 * 3 2 1 6 6 H 1.48499 * 109.47201 * 149.99647 * 3 2 1 7 7 C 1.38807 * 120.00156 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00316 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99879 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00053 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47132 * 174.37156 * 10 9 7 12 12 C 1.52999 * 115.55271 * 294.95238 * 11 10 9 13 13 C 1.52998 * 109.47326 * 279.32676 * 12 11 10 14 14 N 1.46490 * 109.47483 * 175.45637 * 13 12 11 15 15 C 1.34779 * 120.00480 * 179.97438 * 14 13 12 16 16 O 1.21561 * 119.99718 * 0.02562 * 15 14 13 17 17 C 1.47773 * 120.00440 * 179.97438 * 15 14 13 18 18 C 1.39605 * 120.14312 * 0.02562 * 17 15 14 19 19 C 1.38125 * 119.84328 * 179.97438 * 18 17 15 20 20 F 1.35088 * 119.93831 * 179.97438 * 19 18 17 21 21 C 1.38633 * 120.12546 * 359.97438 * 19 18 17 22 22 C 1.38237 * 120.28932 * 0.02562 * 21 19 18 23 23 C 1.38152 * 120.16251 * 359.97438 * 22 21 19 24 24 Cl 1.73601 * 120.06521 * 180.27905 * 23 22 21 25 25 C 1.53002 * 117.51742 * 80.65369 * 11 10 9 26 26 C 1.53002 * 117.49871 * 149.28300 * 11 10 9 27 27 H 0.97003 * 119.99602 * 0.02562 * 1 2 3 28 28 H 0.96997 * 120.00150 * 0.02562 * 9 7 2 29 29 H 1.08998 * 109.47478 * 54.37464 * 10 9 7 30 30 H 1.08999 * 109.47269 * 294.37562 * 10 9 7 31 31 H 1.08994 * 109.47490 * 159.32375 * 12 11 10 32 32 H 1.09003 * 109.47152 * 39.32330 * 12 11 10 33 33 H 1.09001 * 109.47453 * 55.45295 * 13 12 11 34 34 H 1.09005 * 109.46959 * 295.45584 * 13 12 11 35 35 H 0.97004 * 119.99870 * 359.97438 * 14 13 12 36 36 H 1.08007 * 120.08208 * 359.95685 * 18 17 15 37 37 H 1.07994 * 119.85418 * 179.97438 * 21 19 18 38 38 H 1.08004 * 119.91825 * 180.02562 * 22 21 19 39 39 H 1.08999 * 117.50139 * 214.97301 * 25 11 10 40 40 H 1.09000 * 117.49686 * 359.97438 * 25 11 10 41 41 H 1.08994 * 117.49780 * 359.97438 * 26 11 10 42 42 H 1.09001 * 117.50121 * 144.99880 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0005 11 6 1.0698 -4.8162 0.1420 12 6 0.3081 -4.8761 1.4675 13 6 1.1960 -5.5142 2.5377 14 7 0.5086 -5.4733 3.8307 15 6 1.1042 -5.9828 4.9271 16 8 2.2121 -6.4760 4.8431 17 6 0.4111 -5.9410 6.2315 18 6 -0.8611 -5.3748 6.3315 19 6 -1.5036 -5.3395 7.5537 20 9 -2.7344 -4.7916 7.6528 21 6 -0.8877 -5.8652 8.6790 22 6 0.3719 -6.4270 8.5860 23 6 1.0254 -6.4687 7.3696 24 17 2.6042 -7.1814 7.2543 25 6 0.3323 -5.2742 -1.1179 26 6 1.4399 -6.1447 -0.5207 27 1 -0.4850 0.8401 -0.0004 28 1 0.3556 -2.3880 -0.0002 29 1 2.7582 -3.6722 0.8358 30 1 2.6071 -3.7593 -0.9355 31 1 -0.5948 -5.4733 1.3411 32 1 0.0358 -3.8667 1.7760 33 1 2.1341 -4.9636 2.6073 34 1 1.4020 -6.5502 2.2684 35 1 -0.3753 -5.0794 3.8978 36 1 -1.3417 -4.9652 5.4553 37 1 -1.3938 -5.8348 9.6325 38 1 0.8460 -6.8352 9.4665 39 1 -0.6955 -5.6180 -1.0024 40 1 0.5508 -4.7491 -2.0478 41 1 2.3871 -6.1925 -1.0578 42 1 1.1406 -7.0613 -0.0124 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167313260.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:42 Heat of formation + Delta-G solvation = -40.746430 kcal Electronic energy + Delta-G solvation = -26176.673161 eV Core-core repulsion = 22097.526675 eV Total energy + Delta-G solvation = -4079.146486 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.04033 -41.35314 -39.78273 -39.16864 -37.42067 -36.15239 -35.74751 -33.02430 -32.77527 -31.35451 -30.79042 -27.82581 -25.85069 -24.63629 -24.46078 -23.58372 -22.87932 -21.83497 -20.18899 -19.39523 -18.91498 -18.03412 -17.69431 -17.08918 -16.92511 -16.80972 -16.68759 -16.53249 -16.07621 -15.65912 -15.51013 -15.16121 -14.87783 -14.62437 -14.56283 -14.32270 -13.93365 -13.80723 -13.61586 -13.18239 -13.01973 -12.79957 -12.67847 -12.57283 -12.33777 -12.33055 -12.23592 -12.14901 -11.92376 -11.80365 -11.08737 -10.91256 -10.73592 -10.54799 -10.45617 -10.12169 -9.72510 -8.96991 -7.94747 -5.22051 -0.56972 -0.16953 1.05758 1.46445 1.47283 1.55792 1.62076 1.99103 2.44037 2.54179 2.89675 2.96598 3.38193 3.41036 3.49387 3.81647 3.84846 3.87059 3.98140 3.99217 4.08859 4.21738 4.29874 4.42309 4.48747 4.49963 4.64835 4.71738 4.84420 4.84941 4.91537 4.95082 4.98411 5.08879 5.17301 5.27482 5.34851 5.36544 5.39458 5.49127 5.49220 6.27840 6.40431 7.07964 7.35186 8.11311 8.37369 9.28370 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.009984 B = 0.002722 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2803.860964 B =10285.184305 C =11269.878330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.070 4.070 3 Si 0.968 3.032 4 H -0.287 1.287 5 H -0.293 1.293 6 H -0.274 1.274 7 C -0.246 4.246 8 H 0.069 0.931 9 N -0.735 5.735 10 C 0.188 3.812 11 C -0.139 4.139 12 C -0.079 4.079 13 C 0.136 3.864 14 N -0.713 5.713 15 C 0.547 3.453 16 O -0.546 6.546 17 C -0.116 4.116 18 C -0.110 4.110 19 C 0.091 3.909 20 F -0.134 7.134 21 C -0.101 4.101 22 C -0.083 4.083 23 C -0.014 4.014 24 Cl -0.041 7.041 25 C -0.164 4.164 26 C -0.150 4.150 27 H 0.251 0.749 28 H 0.377 0.623 29 H 0.017 0.983 30 H 0.012 0.988 31 H 0.091 0.909 32 H 0.059 0.941 33 H 0.046 0.954 34 H 0.077 0.923 35 H 0.410 0.590 36 H 0.160 0.840 37 H 0.183 0.817 38 H 0.179 0.821 39 H 0.108 0.892 40 H 0.079 0.921 41 H 0.095 0.905 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.616 -18.264 17.428 25.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.262 4.262 3 Si 0.797 3.203 4 H -0.214 1.214 5 H -0.220 1.220 6 H -0.199 1.199 7 C -0.378 4.378 8 H 0.087 0.913 9 N -0.377 5.377 10 C 0.062 3.938 11 C -0.140 4.140 12 C -0.116 4.116 13 C 0.012 3.988 14 N -0.365 5.365 15 C 0.334 3.666 16 O -0.425 6.425 17 C -0.120 4.120 18 C -0.130 4.130 19 C 0.071 3.929 20 F -0.112 7.112 21 C -0.120 4.120 22 C -0.101 4.101 23 C -0.042 4.042 24 Cl -0.012 7.012 25 C -0.201 4.201 26 C -0.187 4.187 27 H 0.060 0.940 28 H 0.209 0.791 29 H 0.035 0.965 30 H 0.030 0.970 31 H 0.109 0.891 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.095 0.905 35 H 0.247 0.753 36 H 0.178 0.822 37 H 0.201 0.799 38 H 0.196 0.804 39 H 0.127 0.873 40 H 0.098 0.902 41 H 0.114 0.886 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.551 -18.554 17.327 25.634 hybrid contribution -0.265 1.596 -0.384 1.663 sum -3.816 -16.958 16.943 24.274 Atomic orbital electron populations 1.69799 1.06330 1.25962 1.59416 1.25459 0.96382 1.00687 1.03722 0.85223 0.77718 0.79903 0.77425 1.21430 1.21960 1.19873 1.19592 0.91312 0.85592 1.41313 0.91305 1.42422 1.05644 1.00568 1.89111 1.20229 0.92671 0.84144 0.96796 1.21397 1.02252 0.96140 0.94209 1.21116 0.97657 1.01184 0.91672 1.21213 0.95312 1.01114 0.81120 1.45889 1.21808 1.60744 1.08093 1.18304 0.85495 0.78568 0.84271 1.90863 1.20001 1.45608 1.85998 1.19529 0.95412 1.03704 0.93324 1.21401 0.93484 0.99279 0.98795 1.17690 0.81738 0.98734 0.94711 1.91556 1.39578 1.83282 1.96828 1.21675 0.94763 0.96194 0.99354 1.21250 0.93996 0.98491 0.96380 1.21328 0.89187 0.98955 0.94732 1.98428 1.23240 1.81120 1.98383 1.23010 0.97978 1.03107 0.96035 1.23060 0.99691 0.93377 1.02607 0.93995 0.79062 0.96479 0.97043 0.89097 0.92215 0.93566 0.90498 0.75269 0.82205 0.79924 0.80385 0.87326 0.90233 0.88642 0.86661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.42 13.06 21.65 0.28 -58.13 16 2 C -0.07 -4.02 5.50 84.86 0.47 -3.56 16 3 Si 0.97 46.53 29.55 68.60 2.03 48.55 16 4 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 5 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 6 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 7 C -0.25 -13.93 9.99 84.03 0.84 -13.09 16 8 H 0.07 3.81 7.83 -2.91 -0.02 3.79 16 9 N -0.73 -37.24 5.30 -343.46 -1.82 -39.06 16 10 C 0.19 7.66 6.10 86.38 0.53 8.18 16 11 C -0.14 -4.25 1.52 -52.18 -0.08 -4.33 16 12 C -0.08 -2.14 5.24 30.59 0.16 -1.98 16 13 C 0.14 3.65 5.51 86.38 0.48 4.12 16 14 N -0.71 -17.09 5.51 -466.06 -2.57 -19.66 16 15 C 0.55 14.70 7.77 86.76 0.67 15.37 16 16 O -0.55 -18.18 13.96 -3.91 -0.05 -18.24 16 17 C -0.12 -2.47 5.88 -20.08 -0.12 -2.59 16 18 C -0.11 -1.86 9.52 22.57 0.21 -1.64 16 19 C 0.09 1.34 7.29 22.34 0.16 1.51 16 20 F -0.13 -2.20 17.26 44.97 0.78 -1.43 16 21 C -0.10 -1.05 10.02 22.36 0.22 -0.82 16 22 C -0.08 -1.00 9.81 22.25 0.22 -0.78 16 23 C -0.01 -0.27 6.35 22.60 0.14 -0.13 16 24 Cl -0.04 -0.96 26.02 -2.72 -0.07 -1.03 16 25 C -0.16 -4.48 9.90 30.60 0.30 -4.18 16 26 C -0.15 -3.59 9.57 30.60 0.29 -3.30 16 27 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 28 H 0.38 20.02 7.46 -92.71 -0.69 19.33 16 29 H 0.02 0.73 7.69 -2.39 -0.02 0.71 16 30 H 0.01 0.49 8.09 -2.39 -0.02 0.47 16 31 H 0.09 1.98 7.94 -2.39 -0.02 1.96 16 32 H 0.06 1.98 7.65 -2.39 -0.02 1.97 16 33 H 0.05 1.52 7.69 -2.39 -0.02 1.50 16 34 H 0.08 1.93 7.80 -2.38 -0.02 1.92 16 35 H 0.41 7.77 6.51 -92.71 -0.60 7.16 16 36 H 0.16 2.19 6.41 -2.91 -0.02 2.17 16 37 H 0.18 0.68 8.06 -2.91 -0.02 0.66 16 38 H 0.18 1.12 8.06 -2.91 -0.02 1.09 16 39 H 0.11 2.53 8.08 -2.39 -0.02 2.51 16 40 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 41 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 42 H 0.12 2.23 7.98 -2.39 -0.02 2.21 16 Total: -1.00 -71.13 373.75 2.86 -68.27 By element: Atomic # 1 Polarization: 28.16 SS G_CDS: -0.22 Total: 27.94 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: 4.50 Total: -7.22 kcal Atomic # 7 Polarization: -112.75 SS G_CDS: -4.10 Total: -116.85 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -0.05 Total: -18.24 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 0.78 Total: -1.43 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.55 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -0.07 Total: -1.03 kcal Total: -71.13 2.86 -68.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167313260.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.522 kcal (2) G-P(sol) polarization free energy of solvation -71.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds