Wall clock time and date at job start Sat Apr 11 2020 05:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86800 * 120.00097 * 2 1 4 4 H 1.48508 * 109.47190 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47137 * 299.99485 * 3 2 1 6 6 H 1.48493 * 109.47525 * 59.99988 * 3 2 1 7 7 C 1.38813 * 120.00106 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00386 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99718 * 359.72851 * 7 2 1 10 10 C 1.46500 * 119.99671 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.46897 * 176.39739 * 10 9 7 12 12 C 1.53001 * 115.54675 * 279.21652 * 11 10 9 13 13 C 1.52994 * 109.47550 * 294.66319 * 12 11 10 14 14 N 1.46502 * 109.47555 * 185.22348 * 13 12 11 15 15 C 1.34771 * 120.00304 * 179.97438 * 14 13 12 16 16 O 1.21576 * 120.00087 * 0.02562 * 15 14 13 17 17 C 1.47614 * 119.99963 * 180.02562 * 15 14 13 18 18 C 1.39891 * 120.17491 * 89.73230 * 17 15 14 19 19 F 1.35096 * 120.10445 * 359.97438 * 18 17 15 20 20 C 1.38246 * 119.79017 * 179.71553 * 18 17 15 21 21 C 1.38287 * 120.15496 * 0.56338 * 20 18 17 22 22 C 1.38349 * 120.36154 * 359.71154 * 21 20 18 23 23 C 1.38073 * 120.20346 * 0.02562 * 22 21 20 24 24 Cl 1.73598 * 120.07678 * 180.02562 * 23 22 21 25 25 C 1.52993 * 117.50257 * 133.51207 * 11 10 9 26 26 C 1.52998 * 60.00208 * 252.51142 * 25 11 10 27 27 H 0.96997 * 119.99924 * 0.02562 * 1 2 3 28 28 H 0.96998 * 119.99789 * 359.97438 * 9 7 2 29 29 H 1.09006 * 109.47137 * 296.39164 * 10 9 7 30 30 H 1.08995 * 109.47627 * 56.39412 * 10 9 7 31 31 H 1.09011 * 109.47097 * 54.66904 * 12 11 10 32 32 H 1.09007 * 109.47259 * 174.65877 * 12 11 10 33 33 H 1.09003 * 109.47305 * 305.22773 * 13 12 11 34 34 H 1.09003 * 109.47164 * 65.22742 * 13 12 11 35 35 H 0.96996 * 119.99624 * 0.02562 * 14 13 12 36 36 H 1.08002 * 119.92233 * 180.29315 * 20 18 17 37 37 H 1.08001 * 119.81866 * 179.69314 * 21 20 18 38 38 H 1.08003 * 119.89371 * 180.02562 * 22 21 20 39 39 H 1.09010 * 117.49786 * 359.97438 * 25 11 10 40 40 H 1.08997 * 117.50088 * 145.01649 * 25 11 10 41 41 H 1.08999 * 117.49639 * 252.51300 * 26 25 11 42 42 H 1.08988 * 117.50367 * 107.48936 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0067 10 6 2.0580 -3.6567 0.0078 11 6 1.0665 -4.8180 0.1057 12 6 0.5503 -5.1280 1.5122 13 6 1.7082 -5.6175 2.3842 14 7 1.1936 -6.0322 3.6917 15 6 2.0388 -6.5027 4.6301 16 8 3.2283 -6.5825 4.3919 17 6 1.5201 -6.9211 5.9473 18 6 1.1085 -8.2421 6.1536 19 9 1.1836 -9.1403 5.1473 20 6 0.6296 -8.6268 7.3921 21 6 0.5463 -7.7067 8.4211 22 6 0.9463 -6.3973 8.2225 23 6 1.4320 -5.9983 6.9931 24 17 1.9335 -4.3546 6.7477 25 6 1.2611 -5.9956 -0.8514 26 6 0.0999 -5.0220 -1.0626 27 1 -0.4850 0.8400 -0.0004 28 1 0.3555 -2.3880 0.0110 29 1 2.6319 -3.7458 -0.9147 30 1 2.7354 -3.6845 0.8612 31 1 0.1223 -4.2257 1.9493 32 1 -0.2148 -5.9024 1.4559 33 1 2.1950 -6.4641 1.9001 34 1 2.4293 -4.8109 2.5168 35 1 0.2446 -5.9689 3.8816 36 1 0.3156 -9.6472 7.5551 37 1 0.1667 -8.0119 9.3851 38 1 0.8784 -5.6851 9.0315 39 1 2.0952 -5.9430 -1.5512 40 1 1.0214 -6.9916 -0.4791 41 1 -0.9037 -5.3774 -0.8293 42 1 0.1703 -4.3290 -1.9009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167849549.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:51 Heat of formation + Delta-G solvation = -30.090187 kcal Electronic energy + Delta-G solvation = -26411.889677 eV Core-core repulsion = 22333.205280 eV Total energy + Delta-G solvation = -4078.684397 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.43045 -40.31793 -38.88555 -38.14131 -36.85619 -34.92143 -33.84998 -32.05576 -31.02512 -30.72311 -29.81523 -25.95695 -24.87698 -23.33870 -23.04823 -22.75616 -21.71901 -20.91014 -18.93745 -18.26142 -17.60301 -17.25852 -16.98672 -16.46846 -15.87892 -15.65752 -15.39555 -15.19725 -14.91429 -14.48901 -14.28107 -13.98150 -13.87208 -13.61380 -13.31841 -13.11220 -12.70244 -12.60484 -12.15560 -12.11771 -11.94493 -11.80652 -11.41661 -11.38749 -11.16829 -10.97497 -10.83220 -10.63682 -10.18391 -10.04132 -9.86199 -9.66050 -9.51026 -9.29165 -9.26340 -9.10895 -8.82917 -6.86709 -5.73425 -3.00967 0.30083 0.45109 1.58941 2.33757 2.75543 2.99268 3.45272 3.51406 3.53350 3.62364 4.08383 4.15043 4.31868 4.40905 4.57866 4.64519 4.81442 4.98549 5.09513 5.17016 5.22079 5.31734 5.37472 5.42688 5.53453 5.60227 5.60482 5.70587 5.76182 5.94218 6.07166 6.10286 6.21374 6.28177 6.36638 6.44967 6.47302 6.54770 6.79156 6.87792 7.32020 7.74291 8.00217 8.45850 9.57602 10.16269 10.52163 11.49503 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.012102 B = 0.002898 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.018977 B = 9659.715487 C =11326.962708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.904 3.096 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.236 4.236 8 H 0.070 0.930 9 N -0.727 5.727 10 C 0.186 3.814 11 C -0.121 4.121 12 C -0.088 4.088 13 C 0.122 3.878 14 N -0.712 5.712 15 C 0.563 3.437 16 O -0.516 6.516 17 C -0.153 4.153 18 C 0.144 3.856 19 F -0.123 7.123 20 C -0.152 4.152 21 C -0.064 4.064 22 C -0.122 4.122 23 C 0.018 3.982 24 Cl -0.031 7.031 25 C -0.177 4.177 26 C -0.161 4.161 27 H 0.253 0.747 28 H 0.385 0.615 29 H 0.018 0.982 30 H 0.027 0.973 31 H 0.082 0.918 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.401 0.599 36 H 0.148 0.852 37 H 0.148 0.852 38 H 0.148 0.852 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.010 -19.853 16.905 26.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.367 4.367 8 H 0.088 0.912 9 N -0.372 5.372 10 C 0.059 3.941 11 C -0.122 4.122 12 C -0.126 4.126 13 C -0.001 4.001 14 N -0.362 5.362 15 C 0.346 3.654 16 O -0.391 6.391 17 C -0.158 4.158 18 C 0.124 3.876 19 F -0.101 7.101 20 C -0.171 4.171 21 C -0.082 4.082 22 C -0.141 4.141 23 C -0.010 4.010 24 Cl -0.001 7.001 25 C -0.215 4.215 26 C -0.198 4.198 27 H 0.063 0.937 28 H 0.219 0.781 29 H 0.036 0.964 30 H 0.045 0.955 31 H 0.101 0.899 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.235 0.765 36 H 0.166 0.834 37 H 0.166 0.834 38 H 0.166 0.834 39 H 0.111 0.889 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.931 -19.656 16.628 25.818 hybrid contribution -0.295 0.985 -0.106 1.034 sum -2.226 -18.671 16.522 25.031 Atomic orbital electron populations 1.69668 1.05046 1.25384 1.58112 1.24709 0.95508 0.97573 1.03240 0.86148 0.78871 0.84267 0.77137 1.20566 1.21923 1.21933 1.19287 0.91061 0.84194 1.42170 0.91231 1.42325 1.05910 0.99630 1.89292 1.20218 0.91857 0.84136 0.97920 1.21558 1.02251 0.98138 0.90281 1.21226 0.96355 1.01521 0.93451 1.21493 0.97354 1.00305 0.80907 1.45989 1.10971 1.64526 1.14733 1.17739 0.86462 0.78038 0.83160 1.90848 1.15111 1.53563 1.79625 1.19895 1.06322 0.93304 0.96284 1.17467 0.98994 0.85248 0.85900 1.91578 1.93663 1.65919 1.58923 1.21228 1.02524 1.02030 0.91305 1.21132 0.96238 0.91709 0.99115 1.21144 0.99861 0.97330 0.95741 1.20788 0.99058 0.87220 0.93948 1.98467 1.89051 1.15796 1.96804 1.23022 1.01221 0.94156 1.03086 1.22904 0.94213 1.02196 1.00508 0.93675 0.78139 0.96448 0.95542 0.89929 0.91876 0.91200 0.90298 0.76475 0.83384 0.83438 0.83444 0.88924 0.89368 0.89375 0.88273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.27 13.06 55.49 0.72 -27.55 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.90 22.75 29.55 -169.99 -5.02 17.73 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 7 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.73 -18.41 5.56 -59.91 -0.33 -18.74 16 10 C 0.19 3.81 6.12 -4.04 -0.02 3.79 16 11 C -0.12 -1.96 1.53 -154.51 -0.24 -2.19 16 12 C -0.09 -1.25 5.21 -26.73 -0.14 -1.39 16 13 C 0.12 1.76 5.43 -4.04 -0.02 1.74 16 14 N -0.71 -9.22 5.55 -61.33 -0.34 -9.56 16 15 C 0.56 8.20 5.95 -12.44 -0.07 8.12 16 16 O -0.52 -9.50 17.11 5.30 0.09 -9.41 16 17 C -0.15 -1.79 5.64 -104.89 -0.59 -2.38 16 18 C 0.14 1.43 7.29 -38.96 -0.28 1.15 16 19 F -0.12 -1.38 16.83 2.25 0.04 -1.35 16 20 C -0.15 -0.99 10.01 -39.56 -0.40 -1.38 16 21 C -0.06 -0.33 10.03 -39.52 -0.40 -0.72 16 22 C -0.12 -0.84 9.81 -39.60 -0.39 -1.23 16 23 C 0.02 0.18 6.35 -39.08 -0.25 -0.07 16 24 Cl -0.03 -0.37 28.04 -51.86 -1.45 -1.82 16 25 C -0.18 -2.43 9.90 -26.74 -0.26 -2.70 16 26 C -0.16 -2.45 9.82 -26.73 -0.26 -2.72 16 27 H 0.25 7.42 8.31 -40.82 -0.34 7.09 16 28 H 0.38 10.20 7.60 -40.82 -0.31 9.89 16 29 H 0.02 0.37 7.94 -51.93 -0.41 -0.04 16 30 H 0.03 0.56 6.72 -51.93 -0.35 0.21 16 31 H 0.08 1.32 8.14 -51.92 -0.42 0.90 16 32 H 0.06 0.76 8.09 -51.93 -0.42 0.34 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.08 1.34 6.96 -51.93 -0.36 0.97 16 35 H 0.40 4.20 8.46 -40.82 -0.35 3.86 16 36 H 0.15 0.59 8.06 -52.49 -0.42 0.17 16 37 H 0.15 0.27 8.06 -52.49 -0.42 -0.15 16 38 H 0.15 0.70 8.06 -52.48 -0.42 0.28 16 39 H 0.09 1.26 8.08 -51.92 -0.42 0.84 16 40 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 41 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.10 1.69 8.14 -51.94 -0.42 1.26 16 LS Contribution 380.49 15.07 5.73 5.73 Total: -1.00 -33.89 380.49 -9.69 -43.57 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -5.55 Total: 8.72 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: -3.57 Total: -7.33 kcal Atomic # 7 Polarization: -55.90 SS G_CDS: 0.05 Total: -55.85 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.09 Total: -9.41 kcal Atomic # 9 Polarization: -1.38 SS G_CDS: 0.04 Total: -1.35 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.73 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -1.45 Total: -1.82 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.89 -9.69 -43.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167849549.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.483 kcal (2) G-P(sol) polarization free energy of solvation -33.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds