Wall clock time and date at job start Sat Apr 11 2020 05:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86800 * 120.00097 * 2 1 4 4 H 1.48508 * 109.47190 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47137 * 299.99485 * 3 2 1 6 6 H 1.48493 * 109.47525 * 59.99988 * 3 2 1 7 7 C 1.38813 * 120.00106 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00386 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99718 * 359.72851 * 7 2 1 10 10 C 1.46500 * 119.99671 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.46897 * 176.39739 * 10 9 7 12 12 C 1.53001 * 115.54675 * 279.21652 * 11 10 9 13 13 C 1.52994 * 109.47550 * 294.66319 * 12 11 10 14 14 N 1.46502 * 109.47555 * 185.22348 * 13 12 11 15 15 C 1.34771 * 120.00304 * 179.97438 * 14 13 12 16 16 O 1.21576 * 120.00087 * 0.02562 * 15 14 13 17 17 C 1.47614 * 119.99963 * 180.02562 * 15 14 13 18 18 C 1.39891 * 120.17491 * 89.73230 * 17 15 14 19 19 F 1.35096 * 120.10445 * 359.97438 * 18 17 15 20 20 C 1.38246 * 119.79017 * 179.71553 * 18 17 15 21 21 C 1.38287 * 120.15496 * 0.56338 * 20 18 17 22 22 C 1.38349 * 120.36154 * 359.71154 * 21 20 18 23 23 C 1.38073 * 120.20346 * 0.02562 * 22 21 20 24 24 Cl 1.73598 * 120.07678 * 180.02562 * 23 22 21 25 25 C 1.52993 * 117.50257 * 133.51207 * 11 10 9 26 26 C 1.52998 * 60.00208 * 252.51142 * 25 11 10 27 27 H 0.96997 * 119.99924 * 0.02562 * 1 2 3 28 28 H 0.96998 * 119.99789 * 359.97438 * 9 7 2 29 29 H 1.09006 * 109.47137 * 296.39164 * 10 9 7 30 30 H 1.08995 * 109.47627 * 56.39412 * 10 9 7 31 31 H 1.09011 * 109.47097 * 54.66904 * 12 11 10 32 32 H 1.09007 * 109.47259 * 174.65877 * 12 11 10 33 33 H 1.09003 * 109.47305 * 305.22773 * 13 12 11 34 34 H 1.09003 * 109.47164 * 65.22742 * 13 12 11 35 35 H 0.96996 * 119.99624 * 0.02562 * 14 13 12 36 36 H 1.08002 * 119.92233 * 180.29315 * 20 18 17 37 37 H 1.08001 * 119.81866 * 179.69314 * 21 20 18 38 38 H 1.08003 * 119.89371 * 180.02562 * 22 21 20 39 39 H 1.09010 * 117.49786 * 359.97438 * 25 11 10 40 40 H 1.08997 * 117.50088 * 145.01649 * 25 11 10 41 41 H 1.08999 * 117.49639 * 252.51300 * 26 25 11 42 42 H 1.08988 * 117.50367 * 107.48936 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0067 10 6 2.0580 -3.6567 0.0078 11 6 1.0665 -4.8180 0.1057 12 6 0.5503 -5.1280 1.5122 13 6 1.7082 -5.6175 2.3842 14 7 1.1936 -6.0322 3.6917 15 6 2.0388 -6.5027 4.6301 16 8 3.2283 -6.5825 4.3919 17 6 1.5201 -6.9211 5.9473 18 6 1.1085 -8.2421 6.1536 19 9 1.1836 -9.1403 5.1473 20 6 0.6296 -8.6268 7.3921 21 6 0.5463 -7.7067 8.4211 22 6 0.9463 -6.3973 8.2225 23 6 1.4320 -5.9983 6.9931 24 17 1.9335 -4.3546 6.7477 25 6 1.2611 -5.9956 -0.8514 26 6 0.0999 -5.0220 -1.0626 27 1 -0.4850 0.8400 -0.0004 28 1 0.3555 -2.3880 0.0110 29 1 2.6319 -3.7458 -0.9147 30 1 2.7354 -3.6845 0.8612 31 1 0.1223 -4.2257 1.9493 32 1 -0.2148 -5.9024 1.4559 33 1 2.1950 -6.4641 1.9001 34 1 2.4293 -4.8109 2.5168 35 1 0.2446 -5.9689 3.8816 36 1 0.3156 -9.6472 7.5551 37 1 0.1667 -8.0119 9.3851 38 1 0.8784 -5.6851 9.0315 39 1 2.0952 -5.9430 -1.5512 40 1 1.0214 -6.9916 -0.4791 41 1 -0.9037 -5.3774 -0.8293 42 1 0.1703 -4.3290 -1.9009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167849549.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:50 Heat of formation + Delta-G solvation = -51.801190 kcal Electronic energy + Delta-G solvation = -26412.831136 eV Core-core repulsion = 22333.205280 eV Total energy + Delta-G solvation = -4079.625856 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.18966 -41.28822 -39.84522 -39.33261 -37.65387 -36.23102 -35.75326 -32.85866 -32.76606 -31.63596 -30.91165 -27.80658 -25.83625 -24.67483 -24.12238 -23.92877 -22.97065 -21.95325 -20.17926 -19.37525 -18.92556 -18.39887 -17.99389 -17.52570 -16.80824 -16.75821 -16.47699 -16.33420 -16.09957 -15.91049 -15.52166 -15.17825 -14.98565 -14.82079 -14.58920 -14.37970 -14.20310 -13.75059 -13.25152 -13.22965 -13.08046 -12.83533 -12.77777 -12.58953 -12.51908 -12.30123 -12.25593 -12.19003 -11.96988 -11.86068 -11.31402 -11.10916 -10.89049 -10.63666 -10.28607 -10.19949 -9.90823 -8.98550 -7.96345 -5.23833 -0.35194 -0.15444 0.82982 1.24284 1.44413 1.44886 1.55047 1.91340 2.25440 2.52341 2.87753 2.95600 3.35121 3.37762 3.70430 3.75390 3.78241 3.84963 3.96208 4.01200 4.08559 4.17324 4.25063 4.40048 4.47690 4.54964 4.61768 4.82411 4.82661 4.85786 4.95145 4.98274 5.07783 5.09722 5.11651 5.22892 5.24006 5.34055 5.35814 5.47125 5.54946 6.26029 6.26414 6.92900 7.33374 8.09488 8.35736 9.27042 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.012102 B = 0.002898 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.018977 B = 9659.715487 C =11326.962708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.071 4.071 3 Si 0.969 3.031 4 H -0.271 1.271 5 H -0.290 1.290 6 H -0.292 1.292 7 C -0.245 4.245 8 H 0.068 0.932 9 N -0.735 5.735 10 C 0.186 3.814 11 C -0.140 4.140 12 C -0.073 4.073 13 C 0.131 3.869 14 N -0.703 5.703 15 C 0.561 3.439 16 O -0.566 6.566 17 C -0.179 4.179 18 C 0.125 3.875 19 F -0.136 7.136 20 C -0.137 4.137 21 C -0.042 4.042 22 C -0.114 4.114 23 C 0.001 3.999 24 Cl -0.061 7.061 25 C -0.149 4.149 26 C -0.162 4.162 27 H 0.251 0.749 28 H 0.377 0.623 29 H 0.013 0.987 30 H 0.017 0.983 31 H 0.060 0.940 32 H 0.096 0.904 33 H 0.072 0.928 34 H 0.045 0.955 35 H 0.414 0.586 36 H 0.181 0.819 37 H 0.196 0.804 38 H 0.172 0.828 39 H 0.093 0.907 40 H 0.117 0.883 41 H 0.110 0.890 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.186 -21.981 18.911 29.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.264 4.264 3 Si 0.798 3.202 4 H -0.195 1.195 5 H -0.217 1.217 6 H -0.219 1.219 7 C -0.377 4.377 8 H 0.086 0.914 9 N -0.378 5.378 10 C 0.060 3.940 11 C -0.141 4.141 12 C -0.111 4.111 13 C 0.008 3.992 14 N -0.353 5.353 15 C 0.347 3.653 16 O -0.445 6.445 17 C -0.184 4.184 18 C 0.105 3.895 19 F -0.115 7.115 20 C -0.155 4.155 21 C -0.059 4.059 22 C -0.132 4.132 23 C -0.027 4.027 24 Cl -0.031 7.031 25 C -0.186 4.186 26 C -0.199 4.199 27 H 0.060 0.940 28 H 0.209 0.791 29 H 0.031 0.969 30 H 0.035 0.965 31 H 0.078 0.922 32 H 0.114 0.886 33 H 0.091 0.909 34 H 0.063 0.937 35 H 0.250 0.750 36 H 0.198 0.802 37 H 0.213 0.787 38 H 0.190 0.810 39 H 0.112 0.888 40 H 0.135 0.865 41 H 0.128 0.872 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.117 -21.808 18.634 28.854 hybrid contribution 0.067 1.554 -0.669 1.693 sum -3.049 -20.254 17.966 27.245 Atomic orbital electron populations 1.69806 1.06354 1.25915 1.59456 1.25484 0.96420 1.00760 1.03737 0.85142 0.78118 0.80112 0.76826 1.19532 1.21727 1.21908 1.19627 0.91284 0.85609 1.41219 0.91364 1.42462 1.05642 1.00582 1.89094 1.20273 0.92672 0.84142 0.96960 1.21414 1.02548 0.98164 0.91971 1.21085 0.96586 1.01443 0.91960 1.21266 0.96952 0.99205 0.81785 1.45917 1.11600 1.63685 1.14101 1.18266 0.85856 0.76944 0.84280 1.90803 1.17190 1.55718 1.80826 1.19740 1.08871 0.94763 0.95007 1.17774 1.00310 0.84366 0.87020 1.91539 1.93957 1.66154 1.59838 1.21666 1.00385 1.03809 0.89687 1.21696 0.93668 0.90155 1.00412 1.21543 0.98190 0.98814 0.94691 1.20960 1.00824 0.85744 0.95127 1.98453 1.89606 1.18058 1.97022 1.23107 1.00169 0.94383 1.00982 1.22913 0.95713 1.02392 0.98885 0.93973 0.79076 0.96948 0.96484 0.92164 0.88579 0.90938 0.93659 0.74972 0.80214 0.78725 0.81044 0.88820 0.86465 0.87196 0.90562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.63 13.06 21.65 0.28 -59.35 16 2 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 3 Si 0.97 47.51 29.55 68.60 2.03 49.53 16 4 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 5 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 6 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 7 C -0.25 -14.24 9.99 84.03 0.84 -13.40 16 8 H 0.07 3.89 7.83 -2.91 -0.02 3.87 16 9 N -0.74 -38.44 5.56 -343.44 -1.91 -40.35 16 10 C 0.19 7.87 6.12 86.38 0.53 8.40 16 11 C -0.14 -4.49 1.53 -52.18 -0.08 -4.57 16 12 C -0.07 -2.06 5.21 30.59 0.16 -1.90 16 13 C 0.13 3.90 5.43 86.38 0.47 4.37 16 14 N -0.70 -18.72 5.55 -466.20 -2.59 -21.31 16 15 C 0.56 17.01 5.95 86.72 0.52 17.53 16 16 O -0.57 -22.08 17.11 -3.96 -0.07 -22.15 16 17 C -0.18 -4.16 5.64 -20.04 -0.11 -4.28 16 18 C 0.13 2.32 7.29 22.67 0.17 2.48 16 19 F -0.14 -2.99 16.83 44.97 0.76 -2.23 16 20 C -0.14 -1.26 10.01 22.28 0.22 -1.04 16 21 C -0.04 -0.23 10.03 22.31 0.22 0.00 16 22 C -0.11 -1.23 9.81 22.26 0.22 -1.01 16 23 C 0.00 0.02 6.35 22.60 0.14 0.16 16 24 Cl -0.06 -1.50 28.04 -2.72 -0.08 -1.58 16 25 C -0.15 -3.81 9.90 30.59 0.30 -3.51 16 26 C -0.16 -4.76 9.82 30.59 0.30 -4.46 16 27 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 28 H 0.38 20.65 7.60 -92.71 -0.70 19.95 16 29 H 0.01 0.55 7.94 -2.38 -0.02 0.53 16 30 H 0.02 0.76 6.72 -2.39 -0.02 0.75 16 31 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 32 H 0.10 2.09 8.09 -2.38 -0.02 2.07 16 33 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.04 1.65 6.96 -2.39 -0.02 1.63 16 35 H 0.41 8.72 8.46 -92.71 -0.78 7.93 16 36 H 0.18 0.53 8.06 -2.91 -0.02 0.50 16 37 H 0.20 -0.65 8.06 -2.91 -0.02 -0.68 16 38 H 0.17 1.01 8.06 -2.91 -0.02 0.98 16 39 H 0.09 2.40 8.08 -2.38 -0.02 2.38 16 40 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 41 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 42 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 Total: -1.00 -77.76 380.49 2.37 -75.39 By element: Atomic # 1 Polarization: 27.42 SS G_CDS: -0.42 Total: 27.00 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: 4.36 Total: -4.96 kcal Atomic # 7 Polarization: -116.79 SS G_CDS: -4.22 Total: -121.01 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: -0.07 Total: -22.15 kcal Atomic # 9 Polarization: -2.99 SS G_CDS: 0.76 Total: -2.23 kcal Atomic # 14 Polarization: 47.51 SS G_CDS: 2.03 Total: 49.53 kcal Atomic # 17 Polarization: -1.50 SS G_CDS: -0.08 Total: -1.58 kcal Total: -77.76 2.37 -75.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167849549.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.590 kcal (2) G-P(sol) polarization free energy of solvation -77.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds