Wall clock time and date at job start Sat Apr 11 2020 05:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86795 * 120.00245 * 2 1 4 4 H 1.48505 * 109.47210 * 270.00285 * 3 2 1 5 5 H 1.48497 * 109.47133 * 30.00066 * 3 2 1 6 6 H 1.48493 * 109.47474 * 150.00255 * 3 2 1 7 7 C 1.38814 * 119.99923 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00263 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99922 * 359.97438 * 7 2 1 10 10 C 1.46506 * 120.00032 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47154 * 174.37142 * 10 9 7 12 12 C 1.52992 * 115.55431 * 294.94993 * 11 10 9 13 13 C 1.53001 * 109.47362 * 279.32719 * 12 11 10 14 14 N 1.46500 * 109.47150 * 175.45325 * 13 12 11 15 15 C 1.34771 * 119.99785 * 180.02562 * 14 13 12 16 16 O 1.21579 * 120.00383 * 359.72756 * 15 14 13 17 17 C 1.47646 * 119.99959 * 180.02562 * 15 14 13 18 18 C 1.39694 * 120.13000 * 359.44601 * 17 15 14 19 19 C 1.37786 * 119.89460 * 179.74420 * 18 17 15 20 20 C 1.38720 * 120.15366 * 0.55699 * 19 18 17 21 21 F 1.35093 * 119.86978 * 179.71788 * 20 19 18 22 22 C 1.38570 * 120.26202 * 359.69671 * 20 19 18 23 23 C 1.38030 * 120.10545 * 0.02562 * 22 20 19 24 24 Cl 1.73598 * 120.08110 * 179.97438 * 23 22 20 25 25 C 1.53007 * 117.51585 * 80.65591 * 11 10 9 26 26 C 1.52996 * 60.00189 * 107.48160 * 25 11 10 27 27 H 0.96996 * 120.00150 * 359.97438 * 1 2 3 28 28 H 0.96994 * 120.00049 * 0.02562 * 9 7 2 29 29 H 1.08997 * 109.46826 * 54.37145 * 10 9 7 30 30 H 1.09007 * 109.47119 * 294.37592 * 10 9 7 31 31 H 1.08995 * 109.47465 * 159.32242 * 12 11 10 32 32 H 1.09003 * 109.47129 * 39.32657 * 12 11 10 33 33 H 1.09004 * 109.47033 * 55.45200 * 13 12 11 34 34 H 1.09002 * 109.46676 * 295.45574 * 13 12 11 35 35 H 0.96994 * 120.00189 * 0.02562 * 14 13 12 36 36 H 1.08001 * 120.05472 * 0.02562 * 18 17 15 37 37 H 1.07993 * 119.92396 * 180.25231 * 19 18 17 38 38 H 1.07998 * 119.94706 * 180.02562 * 22 20 19 39 39 H 1.09003 * 117.49139 * 214.97003 * 25 11 10 40 40 H 1.09000 * 117.50125 * 359.97438 * 25 11 10 41 41 H 1.09004 * 117.49263 * 252.51444 * 26 25 11 42 42 H 1.08991 * 117.50274 * 107.49171 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4401 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0005 11 6 1.0698 -4.8162 0.1409 12 6 0.3081 -4.8761 1.4664 13 6 1.1960 -5.5144 2.5365 14 7 0.5086 -5.4734 3.8296 15 6 1.1047 -5.9820 4.9261 16 8 2.2108 -6.4794 4.8412 17 6 0.4117 -5.9412 6.2291 18 6 -0.8571 -5.3656 6.3309 19 6 -1.5017 -5.3349 7.5483 20 6 -0.8888 -5.8637 8.6748 21 9 -1.5236 -5.8253 9.8667 22 6 0.3719 -6.4314 8.5823 23 6 1.0250 -6.4731 7.3670 24 17 2.6046 -7.1840 7.2520 25 6 0.3323 -5.2742 -1.1190 26 6 1.4397 -6.1447 -0.5219 27 1 -0.4850 0.8400 0.0004 28 1 0.3556 -2.3880 -0.0005 29 1 2.7581 -3.6722 0.8347 30 1 2.6070 -3.7595 -0.9366 31 1 -0.5949 -5.4734 1.3400 32 1 0.0358 -3.8668 1.7749 33 1 2.1341 -4.9637 2.6061 34 1 1.4020 -6.5503 2.2672 35 1 -0.3756 -5.0802 3.8966 36 1 -1.3340 -4.9494 5.4558 37 1 -2.4842 -4.8937 7.6266 38 1 0.8442 -6.8420 9.4625 39 1 -0.6956 -5.6181 -1.0034 40 1 0.5508 -4.7492 -2.0490 41 1 2.3870 -6.1925 -1.0590 42 1 1.1405 -7.0613 -0.0136 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167961581.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:54 Heat of formation + Delta-G solvation = -22.026401 kcal Electronic energy + Delta-G solvation = -26058.045908 eV Core-core repulsion = 21979.711184 eV Total energy + Delta-G solvation = -4078.334725 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.47270 -40.44661 -38.73915 -38.08004 -36.69443 -34.92677 -33.92674 -31.88772 -31.25074 -30.77583 -29.59520 -26.01348 -24.59690 -23.70197 -22.91423 -22.72027 -21.75861 -20.82413 -18.96312 -18.35914 -17.66472 -17.11423 -17.04637 -16.19540 -15.79388 -15.61463 -15.48275 -15.04656 -14.80164 -14.43139 -14.38623 -14.10116 -13.86591 -13.61828 -13.25021 -13.12149 -13.01036 -12.67321 -12.25505 -11.97854 -11.81544 -11.69773 -11.50026 -11.38928 -11.13674 -10.97030 -10.84813 -10.58442 -10.15629 -9.91824 -9.74690 -9.63348 -9.54835 -9.33896 -9.26845 -8.98496 -8.85442 -6.90940 -5.77100 -3.04728 0.14164 0.52279 1.73715 2.42862 2.98305 3.29613 3.43334 3.49002 3.50229 3.64080 4.03602 4.08569 4.35192 4.35944 4.61036 4.61668 4.87512 4.99497 5.05889 5.12491 5.21385 5.30545 5.34538 5.47743 5.51108 5.54948 5.59141 5.65813 5.74342 5.90400 6.09511 6.13617 6.16805 6.21595 6.38617 6.42133 6.45197 6.53676 6.75450 6.83630 7.38688 7.70427 8.09736 8.42228 9.53989 10.12093 10.47952 11.45765 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.010638 B = 0.002587 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2631.525284 B =10822.492173 C =11967.331349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.905 3.095 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.237 4.237 8 H 0.069 0.931 9 N -0.727 5.727 10 C 0.187 3.813 11 C -0.119 4.119 12 C -0.092 4.092 13 C 0.126 3.874 14 N -0.720 5.720 15 C 0.551 3.449 16 O -0.514 6.514 17 C -0.137 4.137 18 C -0.044 4.044 19 C -0.157 4.157 20 C 0.136 3.864 21 F -0.128 7.128 22 C -0.159 4.159 23 C 0.040 3.960 24 Cl -0.015 7.015 25 C -0.165 4.165 26 C -0.177 4.177 27 H 0.254 0.746 28 H 0.384 0.616 29 H 0.027 0.973 30 H 0.017 0.983 31 H 0.062 0.938 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.398 0.602 36 H 0.148 0.852 37 H 0.150 0.850 38 H 0.152 0.848 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.092 0.908 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.498 -16.657 14.903 22.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.209 4.209 3 Si 0.736 3.264 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.368 4.368 8 H 0.087 0.913 9 N -0.371 5.371 10 C 0.060 3.940 11 C -0.120 4.120 12 C -0.129 4.129 13 C 0.003 3.997 14 N -0.372 5.372 15 C 0.337 3.663 16 O -0.390 6.390 17 C -0.141 4.141 18 C -0.063 4.063 19 C -0.176 4.176 20 C 0.116 3.884 21 F -0.107 7.107 22 C -0.179 4.179 23 C 0.011 3.989 24 Cl 0.015 6.985 25 C -0.202 4.202 26 C -0.215 4.215 27 H 0.064 0.936 28 H 0.218 0.782 29 H 0.045 0.955 30 H 0.034 0.966 31 H 0.081 0.919 32 H 0.106 0.894 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.233 0.767 36 H 0.166 0.834 37 H 0.168 0.832 38 H 0.170 0.830 39 H 0.107 0.893 40 H 0.114 0.886 41 H 0.111 0.889 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.410 -16.955 14.854 22.798 hybrid contribution -0.368 1.196 0.247 1.276 sum -3.778 -15.758 15.101 22.151 Atomic orbital electron populations 1.69654 1.05050 1.25542 1.58025 1.24703 0.95511 0.97576 1.03160 0.86213 0.78714 0.83924 0.77511 1.21780 1.21808 1.20775 1.19238 0.91035 0.84181 1.42365 0.91279 1.42287 1.05875 0.99639 1.89333 1.20185 0.91911 0.84181 0.97739 1.21553 1.01742 0.96036 0.92657 1.21260 0.96851 1.02294 0.92533 1.21407 0.96483 1.01206 0.80565 1.45944 1.21357 1.61287 1.08622 1.17894 0.85770 0.79212 0.83414 1.90888 1.18763 1.43903 1.85463 1.19942 0.96067 1.03971 0.94137 1.21211 0.92375 0.94715 0.97996 1.21206 1.02214 1.02725 0.91408 1.17689 0.90939 0.98460 0.81335 1.91554 1.81297 1.94130 1.43677 1.20981 0.94614 1.04042 0.98221 1.20719 0.89209 0.96141 0.92796 1.98447 1.21188 1.80669 1.98217 1.22966 0.96443 1.03090 0.97665 1.22976 1.00061 0.94036 1.04420 0.93606 0.78177 0.95528 0.96561 0.91921 0.89401 0.90661 0.91473 0.76663 0.83400 0.83247 0.83012 0.89331 0.88600 0.88936 0.89237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.62 13.06 55.49 0.72 -26.90 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.30 29.55 -169.99 -5.02 17.27 16 4 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.24 -6.55 9.99 -15.06 -0.15 -6.70 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.73 -17.83 5.30 -59.91 -0.32 -18.15 16 10 C 0.19 3.71 6.10 -4.04 -0.02 3.68 16 11 C -0.12 -1.82 1.52 -154.51 -0.23 -2.06 16 12 C -0.09 -1.25 5.24 -26.73 -0.14 -1.39 16 13 C 0.13 1.67 5.51 -4.04 -0.02 1.64 16 14 N -0.72 -8.33 5.51 -61.31 -0.34 -8.67 16 15 C 0.55 7.20 7.76 -12.42 -0.10 7.10 16 16 O -0.51 -8.32 13.96 5.30 0.07 -8.24 16 17 C -0.14 -1.46 5.88 -104.94 -0.62 -2.07 16 18 C -0.04 -0.34 9.53 -39.20 -0.37 -0.72 16 19 C -0.16 -1.11 10.01 -39.57 -0.40 -1.51 16 20 C 0.14 1.11 7.31 -39.28 -0.29 0.82 16 21 F -0.13 -1.09 17.26 2.25 0.04 -1.05 16 22 C -0.16 -1.37 9.79 -39.54 -0.39 -1.75 16 23 C 0.04 0.42 6.35 -39.08 -0.25 0.17 16 24 Cl -0.01 -0.18 26.02 -51.86 -1.35 -1.53 16 25 C -0.16 -2.33 9.90 -26.73 -0.26 -2.60 16 26 C -0.18 -2.29 9.57 -26.73 -0.26 -2.54 16 27 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 28 H 0.38 9.84 7.46 -40.82 -0.30 9.54 16 29 H 0.03 0.54 7.69 -51.93 -0.40 0.15 16 30 H 0.02 0.34 8.09 -51.93 -0.42 -0.08 16 31 H 0.06 0.72 7.94 -51.93 -0.41 0.31 16 32 H 0.09 1.40 7.64 -51.93 -0.40 1.00 16 33 H 0.08 1.18 7.69 -51.93 -0.40 0.78 16 34 H 0.07 0.87 7.80 -51.93 -0.41 0.46 16 35 H 0.40 3.55 6.50 -40.82 -0.27 3.28 16 36 H 0.15 0.79 6.40 -52.49 -0.34 0.46 16 37 H 0.15 0.72 8.06 -52.49 -0.42 0.30 16 38 H 0.15 1.03 8.06 -52.49 -0.42 0.61 16 39 H 0.09 1.12 8.08 -51.93 -0.42 0.70 16 40 H 0.10 1.48 8.14 -51.93 -0.42 1.05 16 41 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.09 1.01 7.98 -51.93 -0.41 0.60 16 LS Contribution 373.73 15.07 5.63 5.63 Total: -1.00 -32.11 373.73 -9.56 -41.67 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -5.41 Total: 8.37 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: -3.59 Total: -8.40 kcal Atomic # 7 Polarization: -53.79 SS G_CDS: 0.07 Total: -53.72 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: 0.07 Total: -8.24 kcal Atomic # 9 Polarization: -1.09 SS G_CDS: 0.04 Total: -1.05 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Atomic # 17 Polarization: -0.18 SS G_CDS: -1.35 Total: -1.53 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.11 -9.56 -41.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167961581.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.640 kcal (2) G-P(sol) polarization free energy of solvation -32.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds