Wall clock time and date at job start Sat Apr 11 2020 05:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86804 * 120.00007 * 2 1 4 4 H 1.48504 * 109.47145 * 270.00033 * 3 2 1 5 5 H 1.48498 * 109.47139 * 29.99941 * 3 2 1 6 6 H 1.48491 * 109.47031 * 149.99906 * 3 2 1 7 7 C 1.38945 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00150 * 359.97438 * 7 2 1 9 9 N 1.37101 * 119.99605 * 180.02562 * 7 2 1 10 10 C 1.34776 * 119.99876 * 179.97438 * 9 7 2 11 11 O 1.21294 * 120.00059 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00314 * 179.97438 * 10 9 7 13 13 N 1.46895 * 109.47349 * 180.02562 * 12 10 9 14 14 C 1.46904 * 111.00188 * 179.97438 * 13 12 10 15 15 C 1.52995 * 109.47199 * 179.97438 * 14 13 12 16 16 C 1.53001 * 109.47022 * 180.02562 * 15 14 13 17 17 N 1.46502 * 109.47034 * 179.97438 * 16 15 14 18 18 C 1.34778 * 119.99959 * 179.97438 * 17 16 15 19 19 O 1.21524 * 119.99718 * 359.97438 * 18 17 16 20 20 C 1.48082 * 120.00009 * 180.02562 * 18 17 16 21 21 N 1.32778 * 119.73679 * 359.97438 * 20 18 17 22 22 C 1.31462 * 121.65356 * 180.02562 * 21 20 18 23 23 C 1.38650 * 120.94089 * 0.02562 * 22 21 20 24 24 C 1.38512 * 119.37361 * 0.27958 * 23 22 21 25 25 C 1.38800 * 118.47665 * 359.43086 * 24 23 22 26 26 Cl 1.73603 * 120.48816 * 180.26404 * 25 24 23 27 27 H 0.97001 * 119.99897 * 0.02562 * 1 2 3 28 28 H 0.96991 * 120.00203 * 359.97438 * 9 7 2 29 29 H 1.08998 * 109.46549 * 59.99988 * 12 10 9 30 30 H 1.09004 * 109.46716 * 300.00229 * 12 10 9 31 31 H 1.00898 * 110.99935 * 303.95877 * 13 12 10 32 32 H 1.08999 * 109.46631 * 60.00095 * 14 13 12 33 33 H 1.09001 * 109.46903 * 300.00029 * 14 13 12 34 34 H 1.08996 * 109.47286 * 59.99720 * 15 14 13 35 35 H 1.09001 * 109.47231 * 299.99846 * 15 14 13 36 36 H 1.08999 * 109.46905 * 60.00054 * 16 15 14 37 37 H 1.09001 * 109.46807 * 299.99879 * 16 15 14 38 38 H 0.96994 * 119.99943 * 0.02562 * 17 16 15 39 39 H 1.07995 * 119.52996 * 180.02562 * 22 21 20 40 40 H 1.08002 * 120.30915 * 179.97438 * 23 22 21 41 41 H 1.08003 * 120.75888 * 179.72452 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4957 2.0465 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5456 1.4402 0.7000 7 6 2.0088 -1.2033 -0.0005 8 1 1.4688 -2.1386 -0.0005 9 7 3.3798 -1.2033 0.0000 10 6 4.0537 -2.3705 0.0000 11 8 3.4473 -3.4209 0.0000 12 6 5.5608 -2.3706 0.0000 13 7 6.0504 -3.7555 -0.0006 14 6 7.5189 -3.7948 -0.0013 15 6 7.9902 -5.2503 -0.0012 16 6 9.5196 -5.2912 -0.0013 17 7 9.9709 -6.6849 -0.0006 18 6 11.2890 -6.9665 -0.0010 19 8 12.1030 -6.0642 -0.0024 20 6 11.7451 -8.3753 -0.0010 21 7 10.8511 -9.3570 0.0000 22 6 11.2140 -10.6206 0.0006 23 6 12.5538 -10.9775 0.0007 24 6 13.5210 -9.9860 0.0061 25 6 13.1099 -8.6603 -0.0009 26 17 14.2778 -7.3759 -0.0015 27 1 -0.4850 0.8401 -0.0004 28 1 3.8648 -0.3633 0.0004 29 1 5.9240 -1.8567 0.8900 30 1 5.9241 -1.8567 -0.8900 31 1 5.6748 -4.2721 0.7804 32 1 7.8961 -3.2911 0.8887 33 1 7.8954 -3.2905 -0.8913 34 1 7.6129 -5.7544 -0.8909 35 1 7.6137 -5.7541 0.8890 36 1 9.8965 -4.7872 0.8887 37 1 9.8965 -4.7872 -0.8913 38 1 9.3212 -7.4051 -0.0007 39 1 10.4578 -11.3916 0.0010 40 1 12.8405 -12.0188 0.0016 41 1 14.5711 -10.2387 0.0108 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171673323.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:00 Heat of formation + Delta-G solvation = -29.358344 kcal Electronic energy + Delta-G solvation = -24825.147712 eV Core-core repulsion = 20766.415013 eV Total energy + Delta-G solvation = -4058.732700 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.16732 -39.39331 -38.49159 -37.06657 -36.59477 -34.95782 -33.90175 -33.31232 -32.00138 -31.66949 -31.12870 -27.46101 -25.65469 -24.52153 -24.03722 -22.99013 -21.74450 -21.10280 -19.37673 -18.68531 -18.25896 -17.57505 -16.94096 -16.44241 -16.16565 -15.73119 -15.70513 -15.64076 -15.04006 -14.79291 -14.51393 -14.14941 -14.04119 -13.93269 -13.52727 -13.17399 -13.01988 -12.87721 -12.49303 -12.36695 -12.14121 -11.93063 -11.87520 -11.62366 -11.49366 -11.17864 -10.99518 -10.72201 -10.58601 -10.52814 -9.96819 -9.83140 -9.64823 -9.56380 -9.30052 -8.59036 -8.18934 -8.13732 -6.30277 -3.81726 -0.08330 0.37298 1.54673 2.26996 2.64077 3.03555 3.08125 3.16071 3.19737 3.55091 3.75089 4.02476 4.04828 4.10911 4.14775 4.18344 4.55583 4.68752 4.76361 4.80810 5.01844 5.03126 5.15023 5.23100 5.23765 5.37170 5.46444 5.57316 5.64461 5.70888 5.81841 5.91342 5.96294 6.01293 6.13761 6.90606 7.08452 7.22234 7.56867 7.59529 7.82094 8.15409 8.60762 8.95832 9.43398 9.83704 10.82844 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.030120 B = 0.001462 C = 0.001396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.406037 B =19153.149128 C =20049.474541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.041 3.959 3 Si 0.880 3.120 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.306 4.306 8 H 0.120 0.880 9 N -0.591 5.591 10 C 0.450 3.550 11 O -0.565 6.565 12 C 0.048 3.952 13 N -0.669 5.669 14 C 0.063 3.937 15 C -0.130 4.130 16 C 0.120 3.880 17 N -0.707 5.707 18 C 0.563 3.437 19 O -0.512 6.512 20 C 0.088 3.912 21 N -0.444 5.444 22 C 0.102 3.898 23 C -0.137 4.137 24 C -0.076 4.076 25 C -0.040 4.040 26 Cl -0.013 7.013 27 H 0.273 0.727 28 H 0.371 0.629 29 H 0.045 0.955 30 H 0.088 0.912 31 H 0.351 0.649 32 H 0.030 0.970 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.412 0.588 39 H 0.172 0.828 40 H 0.151 0.849 41 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.947 -19.971 0.885 36.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.161 4.161 3 Si 0.707 3.293 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.434 4.434 8 H 0.137 0.863 9 N -0.230 5.230 10 C 0.235 3.765 11 O -0.447 6.447 12 C -0.085 4.085 13 N -0.302 5.302 14 C -0.067 4.067 15 C -0.168 4.168 16 C -0.003 4.003 17 N -0.359 5.359 18 C 0.346 3.654 19 O -0.386 6.386 20 C -0.051 4.051 21 N -0.156 5.156 22 C -0.058 4.058 23 C -0.158 4.158 24 C -0.103 4.103 25 C -0.071 4.071 26 Cl 0.016 6.984 27 H 0.084 0.916 28 H 0.203 0.797 29 H 0.063 0.937 30 H 0.106 0.894 31 H 0.170 0.830 32 H 0.048 0.952 33 H 0.093 0.907 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.248 0.752 39 H 0.189 0.811 40 H 0.169 0.831 41 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 30.056 -19.562 0.206 35.862 hybrid contribution 1.416 1.090 0.908 2.004 sum 31.471 -18.472 1.114 36.509 Atomic orbital electron populations 1.69626 1.05643 1.27485 1.49399 1.25039 0.95495 0.97977 0.97638 0.86664 0.79744 0.84013 0.78916 1.19588 1.20198 1.19526 1.19438 0.79262 0.96646 1.48075 0.86281 1.42206 1.07535 1.06174 1.67105 1.19719 0.88219 0.84560 0.83961 1.90563 1.69456 1.30947 1.53716 1.21704 0.95003 0.90406 1.01367 1.60028 1.05902 1.12767 1.51513 1.21826 0.88607 0.95433 1.00835 1.21744 0.93100 0.98017 1.03954 1.21395 0.94565 0.81573 1.02791 1.45827 1.06775 1.09665 1.73672 1.17713 0.83167 0.86598 0.77897 1.90900 1.53016 1.46027 1.48694 1.21110 0.88698 0.94554 1.00754 1.67719 1.37019 1.00802 1.10011 1.22993 0.95411 0.92743 0.94677 1.22442 0.93674 1.01112 0.98536 1.21647 1.01788 0.90120 0.96707 1.22050 0.91435 0.91628 1.01966 1.98446 1.55831 1.48254 1.95867 0.91624 0.79670 0.93700 0.89406 0.82980 0.95182 0.90709 0.89926 0.91079 0.91138 0.90893 0.75232 0.81074 0.83120 0.82979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.84 13.96 55.50 0.77 -25.07 16 2 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 3 Si 0.88 19.45 27.74 -169.99 -4.71 14.73 16 4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.27 -5.43 6.52 56.52 0.37 -5.06 16 7 C -0.31 -8.70 10.16 -14.93 -0.15 -8.85 16 8 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16 9 N -0.59 -14.15 5.09 -10.96 -0.06 -14.21 16 10 C 0.45 10.25 7.82 -10.98 -0.09 10.17 16 11 O -0.56 -15.23 15.78 5.55 0.09 -15.14 16 12 C 0.05 0.79 6.17 -4.98 -0.03 0.76 16 13 N -0.67 -10.14 6.13 -115.06 -0.70 -10.85 16 14 C 0.06 0.70 5.69 -3.82 -0.02 0.67 16 15 C -0.13 -1.20 5.59 -26.73 -0.15 -1.35 16 16 C 0.12 1.10 5.67 -4.04 -0.02 1.07 16 17 N -0.71 -6.59 5.55 -61.17 -0.34 -6.93 16 18 C 0.56 6.19 7.80 -12.22 -0.10 6.10 16 19 O -0.51 -6.85 13.94 5.34 0.07 -6.77 16 20 C 0.09 0.82 6.75 -82.98 -0.56 0.26 16 21 N -0.44 -3.48 9.54 -9.78 -0.09 -3.58 16 22 C 0.10 0.48 11.18 -17.56 -0.20 0.29 16 23 C -0.14 -0.47 10.11 -39.33 -0.40 -0.86 16 24 C -0.08 -0.38 9.98 -39.27 -0.39 -0.77 16 25 C -0.04 -0.33 6.37 -38.93 -0.25 -0.58 16 26 Cl -0.01 -0.13 26.04 -51.86 -1.35 -1.48 16 27 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 28 H 0.37 7.78 5.76 -40.82 -0.24 7.54 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.35 5.46 8.43 -39.29 -0.33 5.13 16 32 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.41 3.33 7.80 -40.82 -0.32 3.01 16 39 H 0.17 0.30 8.06 -52.49 -0.42 -0.13 16 40 H 0.15 0.02 8.06 -52.49 -0.42 -0.41 16 41 H 0.15 0.39 8.06 -52.48 -0.42 -0.03 16 LS Contribution 370.28 15.07 5.58 5.58 Total: -1.00 -35.60 370.28 -8.28 -43.88 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -5.09 Total: 11.88 kcal Atomic # 6 Polarization: 10.40 SS G_CDS: -2.45 Total: 7.95 kcal Atomic # 7 Polarization: -60.21 SS G_CDS: -0.42 Total: -60.63 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: 0.16 Total: -21.92 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -4.71 Total: 14.73 kcal Atomic # 17 Polarization: -0.13 SS G_CDS: -1.35 Total: -1.48 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.60 -8.28 -43.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171673323.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.523 kcal (2) G-P(sol) polarization free energy of solvation -35.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds