Wall clock time and date at job start Sat Apr 11 2020 05:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86804 * 120.00007 * 2 1 4 4 H 1.48504 * 109.47145 * 270.00033 * 3 2 1 5 5 H 1.48498 * 109.47139 * 29.99941 * 3 2 1 6 6 H 1.48491 * 109.47031 * 149.99906 * 3 2 1 7 7 C 1.38945 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00150 * 359.97438 * 7 2 1 9 9 N 1.37101 * 119.99605 * 180.02562 * 7 2 1 10 10 C 1.34776 * 119.99876 * 179.97438 * 9 7 2 11 11 O 1.21294 * 120.00059 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00314 * 179.97438 * 10 9 7 13 13 N 1.46895 * 109.47349 * 180.02562 * 12 10 9 14 14 C 1.46904 * 111.00188 * 179.97438 * 13 12 10 15 15 C 1.52995 * 109.47199 * 179.97438 * 14 13 12 16 16 C 1.53001 * 109.47022 * 180.02562 * 15 14 13 17 17 N 1.46502 * 109.47034 * 179.97438 * 16 15 14 18 18 C 1.34778 * 119.99959 * 179.97438 * 17 16 15 19 19 O 1.21524 * 119.99718 * 359.97438 * 18 17 16 20 20 C 1.48082 * 120.00009 * 180.02562 * 18 17 16 21 21 N 1.32778 * 119.73679 * 359.97438 * 20 18 17 22 22 C 1.31462 * 121.65356 * 180.02562 * 21 20 18 23 23 C 1.38650 * 120.94089 * 0.02562 * 22 21 20 24 24 C 1.38512 * 119.37361 * 0.27958 * 23 22 21 25 25 C 1.38800 * 118.47665 * 359.43086 * 24 23 22 26 26 Cl 1.73603 * 120.48816 * 180.26404 * 25 24 23 27 27 H 0.97001 * 119.99897 * 0.02562 * 1 2 3 28 28 H 0.96991 * 120.00203 * 359.97438 * 9 7 2 29 29 H 1.08998 * 109.46549 * 59.99988 * 12 10 9 30 30 H 1.09004 * 109.46716 * 300.00229 * 12 10 9 31 31 H 1.00898 * 110.99935 * 303.95877 * 13 12 10 32 32 H 1.08999 * 109.46631 * 60.00095 * 14 13 12 33 33 H 1.09001 * 109.46903 * 300.00029 * 14 13 12 34 34 H 1.08996 * 109.47286 * 59.99720 * 15 14 13 35 35 H 1.09001 * 109.47231 * 299.99846 * 15 14 13 36 36 H 1.08999 * 109.46905 * 60.00054 * 16 15 14 37 37 H 1.09001 * 109.46807 * 299.99879 * 16 15 14 38 38 H 0.96994 * 119.99943 * 0.02562 * 17 16 15 39 39 H 1.07995 * 119.52996 * 180.02562 * 22 21 20 40 40 H 1.08002 * 120.30915 * 179.97438 * 23 22 21 41 41 H 1.08003 * 120.75888 * 179.72452 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4957 2.0465 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5456 1.4402 0.7000 7 6 2.0088 -1.2033 -0.0005 8 1 1.4688 -2.1386 -0.0005 9 7 3.3798 -1.2033 0.0000 10 6 4.0537 -2.3705 0.0000 11 8 3.4473 -3.4209 0.0000 12 6 5.5608 -2.3706 0.0000 13 7 6.0504 -3.7555 -0.0006 14 6 7.5189 -3.7948 -0.0013 15 6 7.9902 -5.2503 -0.0012 16 6 9.5196 -5.2912 -0.0013 17 7 9.9709 -6.6849 -0.0006 18 6 11.2890 -6.9665 -0.0010 19 8 12.1030 -6.0642 -0.0024 20 6 11.7451 -8.3753 -0.0010 21 7 10.8511 -9.3570 0.0000 22 6 11.2140 -10.6206 0.0006 23 6 12.5538 -10.9775 0.0007 24 6 13.5210 -9.9860 0.0061 25 6 13.1099 -8.6603 -0.0009 26 17 14.2778 -7.3759 -0.0015 27 1 -0.4850 0.8401 -0.0004 28 1 3.8648 -0.3633 0.0004 29 1 5.9240 -1.8567 0.8900 30 1 5.9241 -1.8567 -0.8900 31 1 5.6748 -4.2721 0.7804 32 1 7.8961 -3.2911 0.8887 33 1 7.8954 -3.2905 -0.8913 34 1 7.6129 -5.7544 -0.8909 35 1 7.6137 -5.7541 0.8890 36 1 9.8965 -4.7872 0.8887 37 1 9.8965 -4.7872 -0.8913 38 1 9.3212 -7.4051 -0.0007 39 1 10.4578 -11.3916 0.0010 40 1 12.8405 -12.0188 0.0016 41 1 14.5711 -10.2387 0.0108 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171673323.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:59 Heat of formation + Delta-G solvation = -58.981761 kcal Electronic energy + Delta-G solvation = -24826.432280 eV Core-core repulsion = 20766.415013 eV Total energy + Delta-G solvation = -4060.017268 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.70979 -40.31377 -40.05794 -37.74506 -37.54707 -36.15010 -35.68300 -33.82456 -33.72465 -32.62140 -31.94017 -28.78405 -26.76393 -25.60605 -24.65826 -24.03462 -22.57141 -21.81468 -21.27482 -20.26507 -19.24438 -18.11745 -17.78452 -17.38173 -17.30040 -16.86062 -16.60856 -16.55484 -16.21980 -15.83017 -15.69582 -15.25089 -15.01663 -14.80059 -14.68531 -14.34272 -14.29116 -14.13730 -13.43952 -13.39393 -13.22198 -13.08683 -12.89067 -12.76804 -12.47517 -12.41380 -12.35102 -11.97323 -11.84500 -11.51153 -11.28853 -10.93576 -10.49359 -10.42898 -10.27647 -10.24621 -9.97232 -9.32396 -8.41186 -6.02212 -0.58186 -0.02792 0.99015 1.30902 1.36338 1.45072 1.63899 1.95107 1.96103 2.23396 2.66570 2.74008 3.05119 3.15187 3.41833 3.58421 3.69947 3.86107 3.99901 4.10892 4.16146 4.18632 4.24325 4.37817 4.44962 4.56705 4.58162 4.69985 4.76388 4.81021 4.92544 5.15432 5.20169 5.37266 5.40426 5.52916 5.90680 6.05122 6.31832 6.40277 6.59980 6.63202 6.88075 7.07783 7.39899 7.96421 8.76430 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.030120 B = 0.001462 C = 0.001396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.406037 B =19153.149128 C =20049.474541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.965 3.035 4 H -0.257 1.257 5 H -0.275 1.275 6 H -0.231 1.231 7 C -0.331 4.331 8 H 0.055 0.945 9 N -0.591 5.591 10 C 0.447 3.553 11 O -0.615 6.615 12 C 0.062 3.938 13 N -0.689 5.689 14 C 0.065 3.935 15 C -0.117 4.117 16 C 0.127 3.873 17 N -0.702 5.702 18 C 0.556 3.444 19 O -0.545 6.545 20 C 0.060 3.940 21 N -0.462 5.462 22 C 0.097 3.903 23 C -0.115 4.115 24 C -0.077 4.077 25 C -0.056 4.056 26 Cl -0.036 7.036 27 H 0.279 0.721 28 H 0.390 0.610 29 H 0.078 0.922 30 H 0.114 0.886 31 H 0.345 0.655 32 H 0.046 0.954 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.417 0.583 39 H 0.204 0.796 40 H 0.194 0.806 41 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.912 -20.185 1.025 39.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.213 4.213 3 Si 0.785 3.215 4 H -0.182 1.182 5 H -0.200 1.200 6 H -0.154 1.154 7 C -0.460 4.460 8 H 0.073 0.927 9 N -0.233 5.233 10 C 0.235 3.765 11 O -0.499 6.499 12 C -0.071 4.071 13 N -0.321 5.321 14 C -0.064 4.064 15 C -0.156 4.156 16 C 0.003 3.997 17 N -0.354 5.354 18 C 0.341 3.659 19 O -0.422 6.422 20 C -0.078 4.078 21 N -0.174 5.174 22 C -0.063 4.063 23 C -0.135 4.135 24 C -0.103 4.103 25 C -0.087 4.087 26 Cl -0.007 7.007 27 H 0.089 0.911 28 H 0.226 0.774 29 H 0.095 0.905 30 H 0.132 0.868 31 H 0.164 0.836 32 H 0.064 0.936 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.254 0.746 39 H 0.220 0.780 40 H 0.211 0.789 41 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 33.041 -19.788 0.345 38.515 hybrid contribution 0.427 0.877 0.858 1.299 sum 33.468 -18.912 1.203 38.461 Atomic orbital electron populations 1.69808 1.08143 1.29252 1.50263 1.26117 0.96469 1.02708 0.96011 0.85358 0.79486 0.76693 0.79935 1.18195 1.20010 1.15431 1.19023 0.81556 0.94962 1.50444 0.92668 1.42033 1.05807 1.07640 1.67774 1.21020 0.91066 0.83295 0.81082 1.90541 1.71433 1.32800 1.55140 1.21634 0.89423 0.91947 1.04078 1.60031 1.08389 1.12026 1.51674 1.21890 0.85966 0.96565 1.01966 1.21597 0.92944 0.97173 1.03855 1.21296 0.94268 0.81585 1.02527 1.45808 1.06623 1.09895 1.73081 1.18102 0.83193 0.87407 0.77239 1.90866 1.53756 1.47199 1.50404 1.20899 0.89444 0.94043 1.03419 1.67694 1.37088 1.01821 1.10816 1.23675 0.97168 0.92190 0.93310 1.22924 0.92543 1.02713 0.95328 1.22032 1.03586 0.88906 0.95813 1.22262 0.90724 0.92403 1.03270 1.98429 1.56437 1.49697 1.96113 0.91139 0.77437 0.90465 0.86764 0.83614 0.93592 0.89850 0.90542 0.90699 0.91284 0.91282 0.74597 0.77960 0.78892 0.80567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.57 13.96 21.66 0.30 -56.27 16 2 C -0.01 -0.80 5.50 84.92 0.47 -0.34 16 3 Si 0.97 38.92 27.74 68.60 1.90 40.83 16 4 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 5 H -0.28 -11.00 7.11 99.48 0.71 -10.30 16 6 H -0.23 -7.82 6.52 99.48 0.65 -7.17 16 7 C -0.33 -19.52 10.16 84.04 0.85 -18.67 16 8 H 0.06 3.88 7.39 -2.91 -0.02 3.86 16 9 N -0.59 -28.00 5.09 -306.98 -1.56 -29.57 16 10 C 0.45 20.28 7.82 87.66 0.69 20.96 16 11 O -0.61 -34.27 15.78 -3.07 -0.05 -34.31 16 12 C 0.06 1.86 6.17 85.56 0.53 2.39 16 13 N -0.69 -19.69 6.13 -517.94 -3.17 -22.86 16 14 C 0.07 1.28 5.69 86.30 0.49 1.77 16 15 C -0.12 -2.03 5.59 30.59 0.17 -1.86 16 16 C 0.13 2.23 5.67 86.38 0.49 2.72 16 17 N -0.70 -13.07 5.55 -465.73 -2.58 -15.66 16 18 C 0.56 12.52 7.80 86.86 0.68 13.20 16 19 O -0.55 -15.12 13.94 -3.79 -0.05 -15.17 16 20 C 0.06 1.11 6.75 41.90 0.28 1.39 16 21 N -0.46 -6.74 9.54 -184.84 -1.76 -8.51 16 22 C 0.10 0.65 11.18 84.85 0.95 1.60 16 23 C -0.12 -0.36 10.11 22.43 0.23 -0.13 16 24 C -0.08 -0.60 9.98 22.47 0.22 -0.37 16 25 C -0.06 -0.90 6.37 22.69 0.14 -0.76 16 26 Cl -0.04 -0.70 26.04 -2.72 -0.07 -0.77 16 27 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 28 H 0.39 15.24 5.76 -92.71 -0.53 14.71 16 29 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.11 2.92 8.14 -2.39 -0.02 2.90 16 31 H 0.35 10.47 8.43 -89.70 -0.76 9.71 16 32 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.42 6.68 7.80 -92.71 -0.72 5.96 16 39 H 0.20 -0.06 8.06 -2.91 -0.02 -0.08 16 40 H 0.19 -1.03 8.06 -2.91 -0.02 -1.05 16 41 H 0.18 0.41 8.06 -2.91 -0.02 0.38 16 Total: -1.00 -84.81 370.28 -1.83 -86.64 By element: Atomic # 1 Polarization: 34.69 SS G_CDS: -0.97 Total: 33.72 kcal Atomic # 6 Polarization: 15.72 SS G_CDS: 6.19 Total: 21.91 kcal Atomic # 7 Polarization: -124.07 SS G_CDS: -8.78 Total: -132.85 kcal Atomic # 8 Polarization: -49.38 SS G_CDS: -0.10 Total: -49.48 kcal Atomic # 14 Polarization: 38.92 SS G_CDS: 1.90 Total: 40.83 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -0.07 Total: -0.77 kcal Total: -84.81 -1.83 -86.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171673323.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.659 kcal (2) G-P(sol) polarization free energy of solvation -84.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds