Wall clock time and date at job start Sat Apr 11 2020 05:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86797 * 119.99794 * 2 1 4 4 H 1.48503 * 109.46940 * 269.99705 * 3 2 1 5 5 H 1.48505 * 109.47357 * 29.99480 * 3 2 1 6 6 H 1.48501 * 109.47364 * 149.99963 * 3 2 1 7 7 C 1.38794 * 120.00271 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99731 * 359.97438 * 7 2 1 9 9 S 1.76201 * 120.00411 * 180.02562 * 7 2 1 10 10 C 1.80993 * 100.00296 * 179.97438 * 9 7 2 11 11 C 1.50704 * 109.47192 * 180.02562 * 10 9 7 12 12 O 1.21276 * 120.00040 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99770 * 180.02562 * 11 10 9 14 14 C 1.47020 * 125.64983 * 0.02562 * 13 11 10 15 15 C 1.54324 * 107.39983 * 181.10309 * 14 13 11 16 16 C 1.55159 * 102.94134 * 22.11770 * 15 14 13 17 17 H 1.08994 * 111.00854 * 82.57414 * 16 15 14 18 18 N 1.46909 * 110.99880 * 206.42515 * 16 15 14 19 19 C 1.46898 * 110.99386 * 204.99913 * 18 16 15 20 20 C 1.53001 * 109.47002 * 180.02562 * 19 18 16 21 21 C 1.50702 * 109.47442 * 179.97438 * 20 19 18 22 22 C 1.33386 * 125.20179 * 89.99705 * 21 20 19 23 23 C 1.38422 * 114.92146 * 179.97438 * 22 21 20 24 24 C 1.33391 * 114.91825 * 0.02562 * 23 22 21 25 25 S 1.75878 * 109.59474 * 359.75450 * 24 23 22 26 26 C 1.47743 * 125.81887 * 179.97438 * 13 11 10 27 27 H 0.96995 * 120.00373 * 0.02562 * 1 2 3 28 28 H 1.08992 * 109.47229 * 59.99751 * 10 9 7 29 29 H 1.09005 * 109.46803 * 300.00138 * 10 9 7 30 30 H 1.09002 * 109.88367 * 61.60808 * 14 13 11 31 31 H 1.09000 * 109.88319 * 300.59426 * 14 13 11 32 32 H 1.09004 * 110.71964 * 140.48013 * 15 14 13 33 33 H 1.08995 * 110.72102 * 263.57296 * 15 14 13 34 34 H 1.00893 * 111.00220 * 328.95025 * 18 16 15 35 35 H 1.09005 * 109.47448 * 299.99560 * 19 18 16 36 36 H 1.09006 * 109.47518 * 60.00068 * 19 18 16 37 37 H 1.09003 * 109.47111 * 300.00169 * 20 19 18 38 38 H 1.09000 * 109.47165 * 60.00082 * 20 19 18 39 39 H 1.08000 * 122.54263 * 359.96253 * 22 21 20 40 40 H 1.08001 * 122.54427 * 179.97438 * 23 22 21 41 41 H 1.08005 * 125.20134 * 179.97438 * 24 23 22 42 42 H 1.09003 * 110.29227 * 37.02448 * 26 13 11 43 43 H 1.08996 * 110.53057 * 274.75660 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1373 0.0014 9 16 3.7724 -1.2020 0.0012 10 6 4.0867 -2.9844 0.0025 11 6 5.5732 -3.2324 0.0039 12 8 6.3441 -2.2962 0.0035 13 7 6.0458 -4.4946 0.0045 14 6 5.2274 -5.7160 0.0034 15 6 6.1937 -6.9189 0.0331 16 6 7.4935 -6.3063 0.6185 17 1 7.4493 -6.2628 1.7067 18 7 8.6760 -7.0543 0.1710 19 6 9.7863 -6.9006 1.1205 20 6 10.9973 -7.6913 0.6214 21 6 12.1366 -7.5332 1.5951 22 6 12.3714 -8.3288 2.6397 23 6 13.4800 -7.9875 3.3952 24 6 14.1451 -6.9145 2.9644 25 16 13.3639 -6.2753 1.5241 26 6 7.4709 -4.8843 0.0053 27 1 -0.4850 0.8400 -0.0004 28 1 3.6441 -3.4321 -0.8872 29 1 3.6434 -3.4308 0.8927 30 1 4.6174 -5.7527 -0.8991 31 1 4.5865 -5.7336 0.8849 32 1 5.8109 -7.7052 0.6838 33 1 6.3638 -7.3019 -0.9731 34 1 8.4550 -8.0282 0.0278 35 1 10.0504 -5.8462 1.2033 36 1 9.4837 -7.2771 2.0977 37 1 10.7336 -8.7457 0.5383 38 1 11.2999 -7.3144 -0.3555 39 1 11.7441 -9.1749 2.8781 40 1 13.7830 -8.5471 4.2678 41 1 15.0302 -6.5034 3.4271 42 1 8.0505 -4.1964 0.6210 43 1 7.8625 -4.9037 -1.0117 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181106874.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:37 Heat of formation + Delta-G solvation = -23.479634 kcal Electronic energy + Delta-G solvation = -23310.703500 eV Core-core repulsion = 19800.562641 eV Total energy + Delta-G solvation = -3510.140859 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.10086 -39.19681 -38.68358 -36.56731 -34.68483 -33.62538 -31.72117 -30.84845 -29.18641 -27.92113 -27.54547 -24.99427 -23.99063 -22.77102 -21.79156 -20.77068 -20.12907 -19.62958 -18.20084 -17.99311 -17.66878 -17.14267 -16.62242 -16.56173 -16.30220 -15.99806 -15.65666 -15.28989 -14.92844 -14.85063 -14.46075 -14.29115 -14.03299 -13.84655 -13.65669 -13.44588 -13.35234 -13.30575 -13.10712 -13.02520 -12.81733 -12.68714 -12.33892 -12.15834 -11.96581 -11.88056 -11.74748 -11.55607 -11.18178 -11.07065 -10.55768 -9.77497 -9.56363 -9.50084 -9.40663 -9.02783 -8.52588 -6.24146 0.08582 0.73318 0.94082 1.12318 1.30429 1.43859 1.48249 1.51810 1.84803 2.00626 2.24178 2.66267 2.85495 3.06128 3.33362 3.63518 3.79198 3.96833 4.04700 4.09240 4.15074 4.25873 4.27443 4.30283 4.38334 4.48213 4.54345 4.62820 4.66381 4.74087 4.79431 4.86164 4.95326 4.97058 5.05477 5.15538 5.25745 5.28425 5.39620 5.62453 5.69810 5.94650 6.10071 6.31643 6.48473 6.92483 7.02257 8.59640 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.021667 B = 0.001786 C = 0.001687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.001023 B =15675.199861 C =16595.116012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.048 3.952 3 Si 0.913 3.087 4 H -0.262 1.262 5 H -0.257 1.257 6 H -0.239 1.239 7 C -0.528 4.528 8 H 0.064 0.936 9 S -0.178 6.178 10 C -0.100 4.100 11 C 0.546 3.454 12 O -0.567 6.567 13 N -0.617 5.617 14 C 0.089 3.911 15 C -0.117 4.117 16 C 0.085 3.915 17 H 0.066 0.934 18 N -0.677 5.677 19 C 0.069 3.931 20 C -0.040 4.040 21 C -0.179 4.179 22 C -0.145 4.145 23 C -0.142 4.142 24 C -0.222 4.222 25 S 0.064 5.936 26 C 0.115 3.885 27 H 0.277 0.723 28 H 0.111 0.889 29 H 0.112 0.888 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.112 0.888 33 H 0.099 0.901 34 H 0.362 0.638 35 H 0.054 0.946 36 H 0.042 0.958 37 H 0.103 0.897 38 H 0.078 0.922 39 H 0.157 0.843 40 H 0.158 0.842 41 H 0.178 0.822 42 H 0.051 0.949 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.437 -25.282 4.410 36.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.158 4.158 3 Si 0.735 3.265 4 H -0.187 1.187 5 H -0.181 1.181 6 H -0.163 1.163 7 C -0.676 4.676 8 H 0.082 0.918 9 S 0.049 5.951 10 C -0.251 4.251 11 C 0.334 3.666 12 O -0.446 6.446 13 N -0.352 5.352 14 C -0.033 4.033 15 C -0.155 4.155 16 C -0.026 4.026 17 H 0.084 0.916 18 N -0.310 5.310 19 C -0.061 4.061 20 C -0.080 4.080 21 C -0.297 4.297 22 C -0.175 4.175 23 C -0.172 4.172 24 C -0.358 4.358 25 S 0.327 5.673 26 C -0.008 4.008 27 H 0.087 0.913 28 H 0.129 0.871 29 H 0.130 0.870 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.130 0.870 33 H 0.118 0.882 34 H 0.184 0.816 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.121 0.879 38 H 0.097 0.903 39 H 0.174 0.826 40 H 0.175 0.825 41 H 0.195 0.805 42 H 0.069 0.931 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 26.891 -22.048 3.040 34.907 hybrid contribution -1.545 -1.550 1.647 2.739 sum 25.346 -23.598 4.687 34.946 Atomic orbital electron populations 1.70006 1.07183 1.29035 1.49014 1.25528 0.95277 1.02143 0.92864 0.85891 0.80650 0.79736 0.80245 1.18677 1.18146 1.16290 1.22427 0.89967 0.96782 1.58400 0.91804 1.84754 1.06769 1.06006 1.97579 1.23189 0.95200 0.99583 1.07147 1.19704 0.89566 0.81780 0.75586 1.90683 1.59526 1.43109 1.51243 1.48429 1.08874 1.04914 1.72939 1.22360 0.94766 0.82823 1.03388 1.22831 0.92293 0.96290 1.04079 1.22472 0.90535 0.92004 0.97584 0.91641 1.60135 1.05665 1.17307 1.47921 1.21946 0.90523 0.99996 0.93633 1.20053 0.89647 1.02251 0.96003 1.24614 1.02089 1.00140 1.02828 1.20426 0.99478 1.02188 0.95446 1.20495 0.96235 0.98036 1.02451 1.25909 1.06486 1.02263 1.01109 1.84624 1.22711 1.32225 1.27758 1.22297 0.80844 0.96215 1.01474 0.91317 0.87051 0.87018 0.90084 0.90180 0.86965 0.88209 0.81622 0.92715 0.93985 0.87914 0.90334 0.82583 0.82456 0.80467 0.93054 0.90911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.79 13.97 21.65 0.30 -55.49 16 2 C 0.05 2.81 5.50 84.86 0.47 3.28 16 3 Si 0.91 45.53 27.74 68.60 1.90 47.43 16 4 H -0.26 -12.76 7.11 99.48 0.71 -12.06 16 5 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 6 H -0.24 -11.99 6.74 99.48 0.67 -11.32 16 7 C -0.53 -31.08 10.04 67.95 0.68 -30.40 16 8 H 0.06 3.94 8.03 -2.91 -0.02 3.91 16 9 S -0.18 -9.24 18.55 -56.49 -1.05 -10.29 16 10 C -0.10 -3.98 5.35 71.24 0.38 -3.60 16 11 C 0.55 20.59 7.87 87.66 0.69 21.28 16 12 O -0.57 -26.31 16.14 -3.02 -0.05 -26.36 16 13 N -0.62 -16.81 3.34 -811.05 -2.71 -19.51 16 14 C 0.09 1.57 6.48 86.73 0.56 2.13 16 15 C -0.12 -1.20 6.35 31.78 0.20 -1.00 16 16 C 0.09 1.21 3.38 46.29 0.16 1.37 16 17 H 0.07 0.97 7.83 -2.39 -0.02 0.95 16 18 N -0.68 -7.50 6.41 -484.45 -3.11 -10.61 16 19 C 0.07 0.83 5.53 86.30 0.48 1.30 16 20 C -0.04 -0.41 5.97 29.85 0.18 -0.23 16 21 C -0.18 -2.35 5.76 24.59 0.14 -2.21 16 22 C -0.15 -1.68 10.05 21.22 0.21 -1.46 16 23 C -0.14 -1.63 10.18 21.22 0.22 -1.41 16 24 C -0.22 -2.81 11.23 66.72 0.75 -2.06 16 25 S 0.06 0.96 23.33 -56.49 -1.32 -0.35 16 26 C 0.11 2.71 6.62 86.78 0.57 3.29 16 27 H 0.28 15.63 8.31 -92.71 -0.77 14.86 16 28 H 0.11 4.06 8.14 -2.40 -0.02 4.04 16 29 H 0.11 4.06 8.14 -2.39 -0.02 4.04 16 30 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.11 0.59 8.14 -2.38 -0.02 0.57 16 33 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.36 2.20 8.44 -89.70 -0.76 1.44 16 35 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 36 H 0.04 0.47 8.09 -2.38 -0.02 0.45 16 37 H 0.10 0.62 8.14 -2.39 -0.02 0.61 16 38 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.16 1.15 8.06 -2.91 -0.02 1.12 16 40 H 0.16 1.12 8.06 -2.91 -0.02 1.09 16 41 H 0.18 1.53 8.06 -2.91 -0.02 1.51 16 42 H 0.05 1.44 8.05 -2.39 -0.02 1.42 16 43 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -76.36 385.07 -0.12 -76.48 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: 0.21 Total: 8.42 kcal Atomic # 6 Polarization: -15.42 SS G_CDS: 5.69 Total: -9.73 kcal Atomic # 7 Polarization: -80.09 SS G_CDS: -5.51 Total: -85.60 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: -0.05 Total: -26.36 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 1.90 Total: 47.43 kcal Atomic # 16 Polarization: -8.28 SS G_CDS: -2.37 Total: -10.64 kcal Total: -76.36 -0.12 -76.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181106874.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.004 kcal (2) G-P(sol) polarization free energy of solvation -76.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds