Wall clock time and date at job start Sat Apr 11 2020 05:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00400 * 2 1 4 4 H 1.48501 * 109.47007 * 270.00295 * 3 2 1 5 5 H 1.48500 * 109.46742 * 29.99857 * 3 2 1 6 6 H 1.48495 * 109.47340 * 149.99861 * 3 2 1 7 7 C 1.37878 * 119.99958 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00386 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99945 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.46906 * 179.97438 * 9 7 2 11 11 C 1.46902 * 110.99970 * 170.00081 * 10 9 7 12 12 C 1.53240 * 109.34228 * 187.25278 * 11 10 9 13 13 N 1.47074 * 108.52089 * 306.16936 * 12 11 10 14 14 C 1.34779 * 120.87859 * 231.18605 * 13 12 11 15 15 O 1.21275 * 120.00389 * 0.02562 * 14 13 12 16 16 C 1.50706 * 119.99649 * 179.97438 * 14 13 12 17 17 N 1.46500 * 109.46688 * 180.02562 * 16 14 13 18 18 N 1.28388 * 119.15964 * 269.97321 * 17 16 14 19 19 C 1.30488 * 122.43011 * 180.02562 * 18 17 16 20 20 Cl 1.73605 * 119.77723 * 179.97438 * 19 18 17 21 21 C 1.40592 * 120.44337 * 359.75904 * 19 18 17 22 22 C 1.36566 * 118.30698 * 0.49459 * 21 19 18 23 23 C 1.34664 * 119.16543 * 90.00337 * 17 16 14 24 24 O 1.22066 * 120.33349 * 359.95425 * 23 17 16 25 25 C 1.47083 * 118.23951 * 51.45453 * 13 12 11 26 26 C 1.46903 * 111.00175 * 294.29781 * 10 9 7 27 27 H 0.97000 * 119.99702 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.47333 * 59.99751 * 9 7 2 29 29 H 1.08999 * 109.47279 * 299.99658 * 9 7 2 30 30 H 1.09001 * 109.49432 * 67.29263 * 11 10 9 31 31 H 1.09001 * 109.49318 * 307.21530 * 11 10 9 32 32 H 1.09001 * 109.62881 * 186.45970 * 12 11 10 33 33 H 1.09002 * 109.62590 * 65.88155 * 12 11 10 34 34 H 1.08999 * 109.47060 * 60.00038 * 16 14 13 35 35 H 1.08996 * 109.47343 * 300.00294 * 16 14 13 36 36 H 1.08007 * 120.84830 * 180.27851 * 21 19 18 37 37 H 1.08002 * 121.09578 * 179.79624 * 22 21 19 38 38 H 1.09004 * 109.62271 * 68.25421 * 25 13 12 39 39 H 1.08992 * 109.62717 * 188.82934 * 25 13 12 40 40 H 1.08994 * 109.49267 * 292.71116 * 26 10 9 41 41 H 1.08996 * 109.49126 * 52.76200 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 1.5211 -4.8935 0.2387 12 6 2.5637 -6.0033 0.4115 13 7 3.4615 -5.9863 -0.7534 14 6 3.7117 -7.1125 -1.4502 15 8 3.1936 -8.1580 -1.1197 16 6 4.6345 -7.0723 -2.6410 17 7 4.7409 -8.4130 -3.2218 18 7 5.6591 -9.2058 -2.8014 19 6 5.8120 -10.4125 -3.2738 20 17 7.0780 -11.4266 -2.6553 21 6 4.9554 -10.8986 -4.2772 22 6 3.9734 -10.0734 -4.7460 23 6 3.8735 -8.7824 -4.1834 24 8 3.0095 -8.0089 -4.5645 25 6 4.0837 -4.7091 -1.1339 26 6 2.9766 -3.6492 -1.2494 27 1 -0.4850 0.8401 0.0004 28 1 0.6246 -2.5571 -0.8896 29 1 0.6240 -2.5568 0.8903 30 1 0.8795 -5.1264 -0.6112 31 1 0.9159 -4.8191 1.1422 32 1 2.0631 -6.9695 0.4739 33 1 3.1393 -5.8266 1.3201 34 1 5.6211 -6.7335 -2.3248 35 1 4.2359 -6.3843 -3.3866 36 1 5.0732 -11.8978 -4.6697 37 1 3.2925 -10.3993 -5.5184 38 1 4.8026 -4.4104 -0.3710 39 1 4.5885 -4.8193 -2.0936 40 1 2.3148 -3.8993 -2.0785 41 1 3.4267 -2.6722 -1.4254 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181892495.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:42 Heat of formation + Delta-G solvation = 15.888008 kcal Electronic energy + Delta-G solvation = -27078.373180 eV Core-core repulsion = 23021.602510 eV Total energy + Delta-G solvation = -4056.770671 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.54453 -40.02324 -38.26983 -37.66827 -37.18253 -35.13571 -34.54929 -32.53858 -31.95474 -31.00712 -29.26978 -28.02818 -25.72263 -25.09480 -24.37708 -23.33813 -22.15182 -20.86279 -19.18188 -18.95417 -18.31270 -17.68446 -16.96330 -16.46334 -16.36420 -15.97707 -15.58573 -15.16270 -14.78305 -14.49804 -14.27201 -14.03349 -13.93026 -13.81609 -13.71902 -13.60083 -13.28016 -12.52731 -12.37002 -12.21700 -12.18887 -11.95969 -11.47558 -11.35783 -11.15051 -11.04817 -10.93703 -10.80876 -10.68069 -10.59680 -10.19343 -9.99817 -9.88743 -9.32390 -8.85240 -8.63868 -8.49836 -7.39535 -6.09352 -4.11821 0.01100 0.89945 1.05531 1.99455 2.42720 2.78226 3.07757 3.27060 3.34019 3.37220 3.72038 4.03953 4.20532 4.22151 4.35476 4.65250 4.68404 4.81060 4.98420 5.05322 5.16536 5.25588 5.30128 5.34726 5.40240 5.41926 5.56651 5.66576 5.76970 5.92911 6.22339 6.37322 6.38693 6.53349 7.13433 7.16307 7.23344 7.32482 7.58879 7.69488 7.96038 7.98129 8.06898 8.42212 8.95088 9.52877 11.01434 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.024076 B = 0.002236 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.693876 B =12516.665526 C =12597.063426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.899 3.101 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.511 4.511 8 H 0.064 0.936 9 C 0.194 3.806 10 N -0.535 5.535 11 C 0.040 3.960 12 C 0.120 3.880 13 N -0.600 5.600 14 C 0.507 3.493 15 O -0.539 6.539 16 C 0.092 3.908 17 N -0.315 5.315 18 N -0.199 5.199 19 C 0.102 3.898 20 Cl 0.005 6.995 21 C -0.059 4.059 22 C -0.166 4.166 23 C 0.482 3.518 24 O -0.514 6.514 25 C 0.105 3.895 26 C 0.049 3.951 27 H 0.262 0.738 28 H -0.008 1.008 29 H 0.032 0.968 30 H 0.028 0.972 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.134 0.866 35 H 0.140 0.860 36 H 0.162 0.838 37 H 0.174 0.826 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.028 0.972 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.025 -21.858 -8.417 27.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.549 4.549 8 H 0.082 0.918 9 C 0.069 3.931 10 N -0.260 5.260 11 C -0.089 4.089 12 C -0.002 4.002 13 N -0.334 5.334 14 C 0.293 3.707 15 O -0.417 6.417 16 C -0.032 4.032 17 N -0.137 5.137 18 N -0.025 5.025 19 C -0.095 4.095 20 Cl 0.033 6.967 21 C -0.083 4.083 22 C -0.196 4.196 23 C 0.280 3.720 24 O -0.390 6.390 25 C -0.018 4.018 26 C -0.081 4.081 27 H 0.072 0.928 28 H 0.010 0.990 29 H 0.050 0.950 30 H 0.046 0.954 31 H 0.101 0.899 32 H 0.106 0.894 33 H 0.095 0.905 34 H 0.152 0.848 35 H 0.157 0.843 36 H 0.180 0.820 37 H 0.192 0.808 38 H 0.102 0.898 39 H 0.096 0.904 40 H 0.046 0.954 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 13.812 -21.178 -7.413 26.349 hybrid contribution -0.498 0.355 -1.075 1.237 sum 13.314 -20.824 -8.489 26.133 Atomic orbital electron populations 1.69956 1.06115 1.26916 1.50602 1.25003 0.94868 0.99396 0.95325 0.86490 0.79795 0.83043 0.78042 1.20717 1.21244 1.19731 1.21120 0.93439 0.89823 1.50558 0.91772 1.19733 0.89981 0.87088 0.96320 1.62096 1.28160 1.02738 1.33046 1.22415 0.94909 0.90443 1.01144 1.21809 0.91636 0.99691 0.87071 1.48160 1.46684 1.08177 1.30334 1.20348 0.82333 0.84108 0.83924 1.90713 1.51805 1.30142 1.69015 1.21954 1.03379 0.80803 0.97049 1.46077 1.23471 1.13173 1.30954 1.70262 1.09422 1.03194 1.19627 1.21902 0.97114 0.91056 0.99414 1.98431 1.48452 1.62807 1.87038 1.22144 0.91765 1.01675 0.92719 1.22769 1.00932 0.92736 1.03194 1.18095 0.82746 0.90195 0.80979 1.91052 1.32982 1.53818 1.61170 1.22224 0.96532 0.82592 1.00424 1.22421 0.95037 0.98956 0.91646 0.92823 0.99034 0.94959 0.95394 0.89855 0.89398 0.90531 0.84798 0.84268 0.81991 0.80819 0.89817 0.90394 0.95380 0.88177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.12 13.29 55.43 0.74 -25.38 16 2 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 3 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.51 -13.68 8.41 -34.44 -0.29 -13.97 16 8 H 0.06 1.67 7.13 -52.48 -0.37 1.29 16 9 C 0.19 4.85 4.72 -4.98 -0.02 4.83 16 10 N -0.54 -10.83 4.62 -235.47 -1.09 -11.92 16 11 C 0.04 0.71 5.62 -3.70 -0.02 0.69 16 12 C 0.12 1.84 6.60 -3.60 -0.02 1.82 16 13 N -0.60 -8.72 3.00 -172.18 -0.52 -9.24 16 14 C 0.51 7.54 7.77 -10.98 -0.09 7.46 16 15 O -0.54 -9.86 15.88 5.56 0.09 -9.78 16 16 C 0.09 1.04 4.41 -5.19 -0.02 1.02 16 17 N -0.32 -3.87 2.71 -64.51 -0.17 -4.05 16 18 N -0.20 -2.24 10.87 33.01 0.36 -1.88 16 19 C 0.10 0.92 7.37 -17.24 -0.13 0.79 16 20 Cl 0.01 0.04 29.13 -51.86 -1.51 -1.47 16 21 C -0.06 -0.41 9.96 -39.30 -0.39 -0.80 16 22 C -0.17 -1.46 10.13 -39.07 -0.40 -1.86 16 23 C 0.48 6.25 7.47 -15.20 -0.11 6.14 16 24 O -0.51 -8.37 16.64 4.86 0.08 -8.29 16 25 C 0.10 1.36 6.53 -3.36 -0.02 1.34 16 26 C 0.05 0.85 5.47 -3.46 -0.02 0.83 16 27 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 28 H -0.01 -0.22 8.12 -51.93 -0.42 -0.64 16 29 H 0.03 0.87 7.97 -51.93 -0.41 0.46 16 30 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.08 1.43 7.99 -51.93 -0.41 1.02 16 32 H 0.09 1.37 7.06 -51.93 -0.37 1.00 16 33 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.13 1.08 7.98 -51.93 -0.41 0.67 16 35 H 0.14 1.48 6.90 -51.93 -0.36 1.12 16 36 H 0.16 0.48 8.06 -52.48 -0.42 0.06 16 37 H 0.17 1.08 8.06 -52.49 -0.42 0.65 16 38 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.08 0.74 6.02 -51.93 -0.31 0.43 16 40 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.10 1.83 6.67 -51.93 -0.35 1.48 16 LS Contribution 359.75 15.07 5.42 5.42 Total: -1.00 -34.82 359.75 -8.35 -43.18 By element: Atomic # 1 Polarization: 2.87 SS G_CDS: -5.09 Total: -2.22 kcal Atomic # 6 Polarization: 11.36 SS G_CDS: -1.63 Total: 9.73 kcal Atomic # 7 Polarization: -51.78 SS G_CDS: -0.68 Total: -52.47 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: 0.17 Total: -18.07 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 17 Polarization: 0.04 SS G_CDS: -1.51 Total: -1.47 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.82 -8.35 -43.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181892495.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.064 kcal (2) G-P(sol) polarization free energy of solvation -34.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds