Wall clock time and date at job start Sat Apr 11 2020 05:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30849 * 1 3 3 Si 1.86799 * 119.99820 * 2 1 4 4 H 1.48504 * 109.46696 * 239.99669 * 3 2 1 5 5 H 1.48495 * 109.47174 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47189 * 119.99889 * 3 2 1 7 7 C 1.39922 * 120.00170 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99914 * 168.99866 * 7 2 1 9 9 C 1.41296 * 120.00042 * 349.00256 * 7 2 1 10 10 C 1.40636 * 120.23007 * 331.74506 * 9 7 2 11 11 C 1.38139 * 119.70799 * 180.22963 * 10 9 7 12 12 N 1.40020 * 119.90741 * 179.79516 * 11 10 9 13 13 C 1.34775 * 119.99879 * 326.08485 * 12 11 10 14 14 O 1.21292 * 120.00107 * 354.87885 * 13 12 11 15 15 C 1.50693 * 119.99950 * 174.88435 * 13 12 11 16 16 C 1.50693 * 109.47314 * 180.02562 * 15 13 12 17 17 C 1.35007 * 125.69074 * 124.99725 * 16 15 13 18 18 N 1.36841 * 107.09618 * 180.27478 * 17 16 15 19 19 C 1.36453 * 132.73267 * 180.47549 * 18 17 16 20 20 C 1.35582 * 119.07382 * 179.59736 * 19 18 17 21 21 C 1.40198 * 119.32938 * 359.73827 * 20 19 18 22 22 N 1.31225 * 120.37562 * 359.97438 * 21 20 19 23 23 C 1.34089 * 120.92400 * 0.02562 * 22 21 20 24 24 N 1.32516 * 131.94299 * 179.97438 * 23 22 21 25 25 C 1.39362 * 120.18203 * 359.51210 * 11 10 9 26 26 C 1.38368 * 120.46874 * 0.26226 * 25 11 10 27 27 C 1.38013 * 120.28563 * 359.97192 * 26 25 11 28 28 F 1.35095 * 120.09023 * 180.02562 * 27 26 25 29 29 H 0.96995 * 120.00297 * 0.02562 * 1 2 3 30 30 H 1.08004 * 120.14410 * 0.02562 * 10 9 7 31 31 H 0.96997 * 119.99386 * 146.08417 * 12 11 10 32 32 H 1.09000 * 109.47698 * 59.99491 * 15 13 12 33 33 H 1.09008 * 109.46951 * 299.99833 * 15 13 12 34 34 H 1.08000 * 126.44561 * 0.02562 * 17 16 15 35 35 H 1.07994 * 120.46298 * 359.36515 * 19 18 17 36 36 H 1.08000 * 120.33145 * 179.71738 * 20 19 18 37 37 H 1.07998 * 119.81471 * 179.97438 * 21 20 19 38 38 H 1.08007 * 119.76858 * 180.27968 * 25 11 10 39 39 H 1.07999 * 119.85814 * 180.02562 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 3.0962 1.6963 -1.2125 5 1 1.2775 2.7464 -0.0006 6 1 3.0962 1.6965 1.2125 7 6 2.0081 -1.2117 0.0005 8 1 3.0733 -1.2204 -0.1779 9 6 1.3212 -2.4241 0.2345 10 6 0.1535 -2.4364 1.0183 11 6 -0.5069 -3.6285 1.2440 12 7 -1.6674 -3.6463 2.0273 13 6 -1.7924 -2.7967 3.0660 14 8 -0.8641 -2.0819 3.3799 15 6 -3.0854 -2.7349 3.8376 16 6 -2.9649 -1.7134 4.9388 17 6 -3.7942 -0.6665 5.1362 18 7 -3.3319 0.0122 6.2308 19 6 -3.7720 1.1269 6.8832 20 6 -3.0911 1.5661 7.9702 21 6 -1.9570 0.8631 8.4004 22 7 -1.5582 -0.2096 7.7583 23 6 -2.2220 -0.6551 6.6819 24 7 -2.0187 -1.6922 5.8824 25 6 -0.0246 -4.8126 0.6895 26 6 1.1209 -4.8083 -0.0866 27 6 1.7987 -3.6291 -0.3206 28 9 2.9164 -3.6294 -1.0795 29 1 -0.4850 0.8400 -0.0004 30 1 -0.2234 -1.5184 1.4445 31 1 -2.3814 -4.2700 1.8221 32 1 -3.2976 -3.7127 4.2701 33 1 -3.8959 -2.4510 3.1662 34 1 -4.6573 -0.4104 4.5397 35 1 -4.6483 1.6541 6.5362 36 1 -3.4189 2.4489 8.4991 37 1 -1.4085 1.2062 9.2651 38 1 -0.5488 -5.7402 0.8667 39 1 1.4857 -5.7316 -0.5118 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182746829.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:45 Heat of formation + Delta-G solvation = 55.070446 kcal Electronic energy + Delta-G solvation = -27964.730823 eV Core-core repulsion = 23788.631775 eV Total energy + Delta-G solvation = -4176.099048 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.108 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -47.13134 -43.07879 -39.57969 -38.36687 -36.92007 -34.69851 -34.22030 -33.13781 -32.19442 -30.32701 -29.71419 -28.66767 -27.24789 -25.35295 -24.35486 -23.43258 -22.08041 -21.34860 -20.46266 -19.48582 -18.36053 -17.85556 -17.65659 -16.69478 -16.37808 -16.08434 -15.96842 -15.75202 -15.11196 -14.79311 -14.61820 -14.35096 -13.98760 -13.90317 -13.61654 -13.24456 -13.09375 -12.85564 -12.55214 -12.47749 -12.20824 -11.80508 -11.75585 -11.59359 -11.56672 -11.09979 -10.90892 -10.48351 -10.44438 -10.24429 -9.84255 -9.69002 -9.37350 -9.22638 -9.07340 -8.77247 -8.21310 -7.47285 -6.83824 -6.66924 -4.37782 0.37062 0.91071 2.25127 2.53023 2.62090 2.83356 3.08933 3.13352 3.17475 3.38638 3.43782 3.53939 3.81515 3.97265 4.06815 4.23427 4.48445 4.61969 4.78072 4.86932 5.03849 5.30308 5.32609 5.37081 5.43138 5.53458 5.61589 5.94910 5.96650 6.13806 6.38909 6.44069 6.47266 6.82024 6.95902 7.01508 7.21600 7.45544 7.49348 7.60865 7.73603 7.94599 8.06066 8.16243 8.32326 8.53737 8.81545 8.87549 8.93975 10.20759 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.011529 B = 0.003396 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2428.073289 B = 8243.317173 C = 9844.773120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.075 3.925 3 Si 0.914 3.086 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.449 4.449 8 H 0.082 0.918 9 C 0.094 3.906 10 C -0.131 4.131 11 C 0.138 3.862 12 N -0.670 5.670 13 C 0.505 3.495 14 O -0.489 6.489 15 C -0.060 4.060 16 C 0.099 3.901 17 C -0.089 4.089 18 N -0.400 5.400 19 C 0.111 3.889 20 C -0.211 4.211 21 C 0.162 3.838 22 N -0.431 5.431 23 C 0.375 3.625 24 N -0.434 5.434 25 C -0.238 4.238 26 C -0.111 4.111 27 C -0.038 4.038 28 F -0.164 7.164 29 H 0.280 0.720 30 H 0.148 0.852 31 H 0.398 0.602 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.188 0.812 35 H 0.173 0.827 36 H 0.163 0.837 37 H 0.181 0.819 38 H 0.100 0.900 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.471 3.570 12.889 20.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.143 4.143 3 Si 0.739 3.261 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.478 4.478 8 H 0.100 0.900 9 C 0.091 3.909 10 C -0.152 4.152 11 C 0.045 3.955 12 N -0.315 5.315 13 C 0.290 3.710 14 O -0.361 6.361 15 C -0.101 4.101 16 C -0.035 4.035 17 C -0.220 4.220 18 N -0.077 5.077 19 C -0.022 4.022 20 C -0.235 4.235 21 C -0.026 4.026 22 N -0.142 5.142 23 C 0.027 3.973 24 N -0.155 5.155 25 C -0.259 4.259 26 C -0.131 4.131 27 C -0.059 4.059 28 F -0.143 7.143 29 H 0.091 0.909 30 H 0.165 0.835 31 H 0.232 0.768 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.205 0.795 35 H 0.190 0.810 36 H 0.180 0.820 37 H 0.197 0.803 38 H 0.118 0.882 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -13.634 3.079 13.241 19.254 hybrid contribution -1.276 1.538 -0.630 2.096 sum -14.910 4.618 12.611 20.066 Atomic orbital electron populations 1.69763 1.07526 1.29242 1.35218 1.25873 0.94859 1.01364 0.92155 0.86256 0.80031 0.79763 0.80080 1.18804 1.20332 1.18685 1.19459 0.96253 0.90237 1.41860 0.89958 1.17505 0.92431 0.91206 0.89804 1.21300 0.97857 0.96419 0.99665 1.17580 0.88582 0.94341 0.94958 1.43338 1.19313 1.38849 1.30000 1.20190 0.89312 0.81132 0.80379 1.90833 1.39748 1.40318 1.65215 1.20043 0.97745 0.98562 0.93788 1.20176 0.91493 0.96021 0.95856 1.22313 1.06541 0.98383 0.94802 1.43968 1.22720 1.19500 1.21543 1.22145 0.99714 0.87299 0.93000 1.21765 0.98838 1.04149 0.98709 1.23270 0.93040 0.88822 0.97462 1.67867 1.27628 1.14283 1.04376 1.21986 0.86522 0.92987 0.95845 1.70653 1.23183 1.17201 1.04474 1.19861 1.00758 0.95191 1.10106 1.20240 0.96302 0.95632 1.00881 1.17915 0.89450 0.95508 1.02982 1.91260 1.50904 1.97427 1.74737 0.90891 0.83511 0.76843 0.87138 0.87023 0.79485 0.81026 0.81992 0.80255 0.88219 0.87794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.47 10.82 55.55 0.60 -20.87 16 2 C 0.08 2.02 5.25 -17.34 -0.09 1.93 16 3 Si 0.91 20.21 29.57 -169.99 -5.03 15.18 16 4 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 5 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 6 H -0.26 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.45 -12.88 8.76 -37.79 -0.33 -13.21 16 8 H 0.08 2.31 7.76 -52.48 -0.41 1.91 16 9 C 0.09 2.70 5.56 -106.78 -0.59 2.11 16 10 C -0.13 -3.59 7.26 -38.71 -0.28 -3.87 16 11 C 0.14 3.22 6.26 -83.73 -0.52 2.69 16 12 N -0.67 -12.29 5.34 -9.90 -0.05 -12.34 16 13 C 0.51 9.69 7.55 -10.99 -0.08 9.61 16 14 O -0.49 -12.28 13.27 5.55 0.07 -12.20 16 15 C -0.06 -0.79 6.26 -29.04 -0.18 -0.97 16 16 C 0.10 1.55 5.85 -82.95 -0.49 1.07 16 17 C -0.09 -1.11 11.64 -16.46 -0.19 -1.30 16 18 N -0.40 -5.15 2.95 -64.40 -0.19 -5.34 16 19 C 0.11 0.90 11.07 -16.45 -0.18 0.72 16 20 C -0.21 -1.40 10.06 -39.80 -0.40 -1.81 16 21 C 0.16 1.51 11.27 -17.08 -0.19 1.32 16 22 N -0.43 -6.56 10.48 -13.70 -0.14 -6.70 16 23 C 0.37 6.36 8.92 -322.52 -2.88 3.48 16 24 N -0.43 -8.40 10.66 -10.66 -0.11 -8.51 16 25 C -0.24 -5.20 9.96 -39.12 -0.39 -5.59 16 26 C -0.11 -2.59 10.00 -39.62 -0.40 -2.98 16 27 C -0.04 -1.02 7.31 -38.62 -0.28 -1.30 16 28 F -0.16 -4.33 16.75 2.25 0.04 -4.29 16 29 H 0.28 6.95 8.30 -40.82 -0.34 6.61 16 30 H 0.15 4.31 4.56 -52.48 -0.24 4.07 16 31 H 0.40 5.34 8.82 -40.82 -0.36 4.98 16 32 H 0.11 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.11 1.01 8.10 -51.92 -0.42 0.59 16 34 H 0.19 1.47 8.06 -52.49 -0.42 1.05 16 35 H 0.17 0.66 8.06 -52.49 -0.42 0.24 16 36 H 0.16 0.38 8.06 -52.49 -0.42 -0.04 16 37 H 0.18 0.92 8.06 -52.49 -0.42 0.50 16 38 H 0.10 1.82 8.06 -52.48 -0.42 1.40 16 39 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 LS Contribution 348.16 15.07 5.25 5.25 Total: -1.00 -39.85 348.16 -10.57 -50.42 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -3.52 Total: 7.51 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: -7.48 Total: -8.10 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: 0.10 Total: -53.77 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: 0.07 Total: -12.20 kcal Atomic # 9 Polarization: -4.33 SS G_CDS: 0.04 Total: -4.29 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.03 Total: 15.18 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -39.85 -10.57 -50.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182746829.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.495 kcal (2) G-P(sol) polarization free energy of solvation -39.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds