Wall clock time and date at job start Sat Apr 11 2020 05:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30849 * 1 3 3 Si 1.86799 * 119.99820 * 2 1 4 4 H 1.48504 * 109.46696 * 239.99669 * 3 2 1 5 5 H 1.48495 * 109.47174 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47189 * 119.99889 * 3 2 1 7 7 C 1.39922 * 120.00170 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99914 * 168.99866 * 7 2 1 9 9 C 1.41296 * 120.00042 * 349.00256 * 7 2 1 10 10 C 1.40636 * 120.23007 * 331.74506 * 9 7 2 11 11 C 1.38139 * 119.70799 * 180.22963 * 10 9 7 12 12 N 1.40020 * 119.90741 * 179.79516 * 11 10 9 13 13 C 1.34775 * 119.99879 * 326.08485 * 12 11 10 14 14 O 1.21292 * 120.00107 * 354.87885 * 13 12 11 15 15 C 1.50693 * 119.99950 * 174.88435 * 13 12 11 16 16 C 1.50693 * 109.47314 * 180.02562 * 15 13 12 17 17 C 1.35007 * 125.69074 * 124.99725 * 16 15 13 18 18 N 1.36841 * 107.09618 * 180.27478 * 17 16 15 19 19 C 1.36453 * 132.73267 * 180.47549 * 18 17 16 20 20 C 1.35582 * 119.07382 * 179.59736 * 19 18 17 21 21 C 1.40198 * 119.32938 * 359.73827 * 20 19 18 22 22 N 1.31225 * 120.37562 * 359.97438 * 21 20 19 23 23 C 1.34089 * 120.92400 * 0.02562 * 22 21 20 24 24 N 1.32516 * 131.94299 * 179.97438 * 23 22 21 25 25 C 1.39362 * 120.18203 * 359.51210 * 11 10 9 26 26 C 1.38368 * 120.46874 * 0.26226 * 25 11 10 27 27 C 1.38013 * 120.28563 * 359.97192 * 26 25 11 28 28 F 1.35095 * 120.09023 * 180.02562 * 27 26 25 29 29 H 0.96995 * 120.00297 * 0.02562 * 1 2 3 30 30 H 1.08004 * 120.14410 * 0.02562 * 10 9 7 31 31 H 0.96997 * 119.99386 * 146.08417 * 12 11 10 32 32 H 1.09000 * 109.47698 * 59.99491 * 15 13 12 33 33 H 1.09008 * 109.46951 * 299.99833 * 15 13 12 34 34 H 1.08000 * 126.44561 * 0.02562 * 17 16 15 35 35 H 1.07994 * 120.46298 * 359.36515 * 19 18 17 36 36 H 1.08000 * 120.33145 * 179.71738 * 20 19 18 37 37 H 1.07998 * 119.81471 * 179.97438 * 21 20 19 38 38 H 1.08007 * 119.76858 * 180.27968 * 25 11 10 39 39 H 1.07999 * 119.85814 * 180.02562 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 3.0962 1.6963 -1.2125 5 1 1.2775 2.7464 -0.0006 6 1 3.0962 1.6965 1.2125 7 6 2.0081 -1.2117 0.0005 8 1 3.0733 -1.2204 -0.1779 9 6 1.3212 -2.4241 0.2345 10 6 0.1535 -2.4364 1.0183 11 6 -0.5069 -3.6285 1.2440 12 7 -1.6674 -3.6463 2.0273 13 6 -1.7924 -2.7967 3.0660 14 8 -0.8641 -2.0819 3.3799 15 6 -3.0854 -2.7349 3.8376 16 6 -2.9649 -1.7134 4.9388 17 6 -3.7942 -0.6665 5.1362 18 7 -3.3319 0.0122 6.2308 19 6 -3.7720 1.1269 6.8832 20 6 -3.0911 1.5661 7.9702 21 6 -1.9570 0.8631 8.4004 22 7 -1.5582 -0.2096 7.7583 23 6 -2.2220 -0.6551 6.6819 24 7 -2.0187 -1.6922 5.8824 25 6 -0.0246 -4.8126 0.6895 26 6 1.1209 -4.8083 -0.0866 27 6 1.7987 -3.6291 -0.3206 28 9 2.9164 -3.6294 -1.0795 29 1 -0.4850 0.8400 -0.0004 30 1 -0.2234 -1.5184 1.4445 31 1 -2.3814 -4.2700 1.8221 32 1 -3.2976 -3.7127 4.2701 33 1 -3.8959 -2.4510 3.1662 34 1 -4.6573 -0.4104 4.5397 35 1 -4.6483 1.6541 6.5362 36 1 -3.4189 2.4489 8.4991 37 1 -1.4085 1.2062 9.2651 38 1 -0.5488 -5.7402 0.8667 39 1 1.4857 -5.7316 -0.5118 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182746829.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:44 Heat of formation + Delta-G solvation = 28.404333 kcal Electronic energy + Delta-G solvation = -27965.887153 eV Core-core repulsion = 23788.631775 eV Total energy + Delta-G solvation = -4177.255378 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.108 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.18591 -43.95862 -41.13089 -39.35174 -38.65759 -36.09593 -35.55442 -34.95238 -33.17628 -31.69878 -31.26677 -30.02052 -28.59030 -27.34582 -25.21426 -24.28959 -23.74070 -23.01858 -21.86035 -20.99629 -19.68625 -19.10845 -18.70054 -17.99376 -17.94974 -17.68091 -17.21572 -16.97204 -16.79306 -16.41483 -15.95241 -15.87557 -15.33167 -15.13842 -15.02785 -14.61695 -14.34278 -14.17004 -13.90221 -13.77452 -13.61555 -13.48302 -13.43455 -13.19446 -12.89719 -12.78436 -12.56409 -12.30186 -12.16886 -11.60356 -11.41151 -11.29043 -10.89249 -10.72182 -10.54683 -9.95846 -9.46404 -9.14057 -8.76736 -8.58141 -6.48005 -0.31433 0.11526 0.66363 0.91048 1.26111 1.38600 1.40468 1.47450 1.68707 1.86128 2.13038 2.38520 2.61708 2.66347 2.70566 3.37364 3.51462 3.61127 3.68790 4.00313 4.04344 4.13549 4.26444 4.32372 4.35192 4.50285 4.64545 4.65192 4.76057 4.79352 4.97276 5.07059 5.12791 5.21520 5.24094 5.49499 5.63488 5.76118 5.76633 5.80799 6.05803 6.20473 6.51813 6.59659 6.72172 6.79165 6.87537 7.04147 7.48339 8.24841 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.011529 B = 0.003396 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2428.073289 B = 8243.317173 C = 9844.773120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.034 3.966 3 Si 0.981 3.019 4 H -0.252 1.252 5 H -0.258 1.258 6 H -0.269 1.269 7 C -0.498 4.498 8 H 0.069 0.931 9 C 0.059 3.941 10 C -0.159 4.159 11 C 0.141 3.859 12 N -0.656 5.656 13 C 0.498 3.502 14 O -0.556 6.556 15 C -0.044 4.044 16 C 0.055 3.945 17 C -0.075 4.075 18 N -0.405 5.405 19 C 0.102 3.898 20 C -0.198 4.198 21 C 0.169 3.831 22 N -0.498 5.498 23 C 0.343 3.657 24 N -0.507 5.507 25 C -0.219 4.219 26 C -0.107 4.107 27 C -0.071 4.071 28 F -0.171 7.171 29 H 0.287 0.713 30 H 0.122 0.878 31 H 0.425 0.575 32 H 0.139 0.861 33 H 0.159 0.841 34 H 0.234 0.766 35 H 0.221 0.779 36 H 0.216 0.784 37 H 0.216 0.784 38 H 0.151 0.849 39 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.974 4.368 13.878 23.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.181 4.181 3 Si 0.801 3.199 4 H -0.176 1.176 5 H -0.182 1.182 6 H -0.194 1.194 7 C -0.527 4.527 8 H 0.087 0.913 9 C 0.055 3.945 10 C -0.181 4.181 11 C 0.047 3.953 12 N -0.303 5.303 13 C 0.286 3.714 14 O -0.431 6.431 15 C -0.084 4.084 16 C -0.078 4.078 17 C -0.206 4.206 18 N -0.083 5.083 19 C -0.029 4.029 20 C -0.220 4.220 21 C -0.017 4.017 22 N -0.211 5.211 23 C -0.006 4.006 24 N -0.230 5.230 25 C -0.239 4.239 26 C -0.126 4.126 27 C -0.092 4.092 28 F -0.150 7.150 29 H 0.097 0.903 30 H 0.140 0.860 31 H 0.264 0.736 32 H 0.157 0.843 33 H 0.176 0.824 34 H 0.251 0.749 35 H 0.238 0.762 36 H 0.233 0.767 37 H 0.233 0.767 38 H 0.168 0.832 39 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -17.215 3.846 14.226 22.661 hybrid contribution -0.278 1.256 -0.743 1.486 sum -17.493 5.102 13.482 22.667 Atomic orbital electron populations 1.69816 1.08625 1.30331 1.35596 1.26699 0.95791 1.04331 0.91293 0.85279 0.78967 0.75716 0.79953 1.17635 1.18170 1.19398 1.19634 0.95987 0.92010 1.45117 0.91315 1.17889 0.93583 0.92180 0.90804 1.21171 0.98786 0.97319 1.00818 1.17762 0.89559 0.93607 0.94392 1.43273 1.18539 1.39429 1.29104 1.21386 0.90701 0.79366 0.79928 1.90817 1.42588 1.42756 1.66983 1.20139 0.94931 1.00045 0.93287 1.20660 0.92330 0.98279 0.96497 1.22967 1.06624 0.96747 0.94301 1.44125 1.21882 1.20495 1.21748 1.23187 1.01041 0.85814 0.92838 1.22389 0.96950 1.04705 0.97982 1.24177 0.93552 0.86856 0.97076 1.67876 1.29928 1.17509 1.05798 1.22063 0.88311 0.93670 0.96587 1.70466 1.25937 1.19895 1.06730 1.20416 0.99726 0.96372 1.07431 1.20685 0.96033 0.95682 1.00225 1.18281 0.90199 0.96512 1.04181 1.91223 1.51302 1.97504 1.74970 0.90258 0.86046 0.73632 0.84281 0.82357 0.74933 0.76208 0.76702 0.76714 0.83152 0.84175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -46.42 10.82 21.82 0.24 -46.18 16 2 C 0.03 1.89 5.25 85.25 0.45 2.34 16 3 Si 0.98 43.16 29.57 68.60 2.03 45.18 16 4 H -0.25 -10.54 7.11 99.48 0.71 -9.83 16 5 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 6 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 7 C -0.50 -30.55 8.76 23.43 0.21 -30.35 16 8 H 0.07 4.19 7.76 -2.91 -0.02 4.16 16 9 C 0.06 3.56 5.56 -21.26 -0.12 3.44 16 10 C -0.16 -9.12 7.26 22.83 0.17 -8.96 16 11 C 0.14 6.56 6.26 38.08 0.24 6.80 16 12 N -0.66 -23.28 5.34 -303.61 -1.62 -24.90 16 13 C 0.50 19.22 7.55 87.66 0.66 19.88 16 14 O -0.56 -29.45 13.27 -3.07 -0.04 -29.49 16 15 C -0.04 -1.08 6.26 29.10 0.18 -0.90 16 16 C 0.06 1.73 5.85 41.54 0.24 1.98 16 17 C -0.08 -1.74 11.64 83.17 0.97 -0.77 16 18 N -0.41 -9.96 2.95 -357.66 -1.05 -11.01 16 19 C 0.10 1.30 11.07 83.36 0.92 2.22 16 20 C -0.20 -1.88 10.06 22.13 0.22 -1.66 16 21 C 0.17 2.89 11.27 85.26 0.96 3.85 16 22 N -0.50 -15.71 10.48 -197.26 -2.07 -17.78 16 23 C 0.34 12.07 8.92 261.39 2.33 14.40 16 24 N -0.51 -20.75 10.66 -187.64 -2.00 -22.75 16 25 C -0.22 -9.06 9.96 22.57 0.22 -8.84 16 26 C -0.11 -4.86 10.00 22.25 0.22 -4.64 16 27 C -0.07 -3.93 7.31 22.89 0.17 -3.76 16 28 F -0.17 -9.37 16.75 44.97 0.75 -8.62 16 29 H 0.29 14.74 8.30 -92.71 -0.77 13.97 16 30 H 0.12 7.58 4.56 -2.91 -0.01 7.57 16 31 H 0.42 10.09 8.82 -92.71 -0.82 9.27 16 32 H 0.14 2.54 8.14 -2.39 -0.02 2.52 16 33 H 0.16 2.29 8.10 -2.38 -0.02 2.27 16 34 H 0.23 2.72 8.06 -2.91 -0.02 2.69 16 35 H 0.22 0.46 8.06 -2.91 -0.02 0.44 16 36 H 0.22 -0.33 8.06 -2.91 -0.02 -0.36 16 37 H 0.22 1.69 8.06 -2.91 -0.02 1.67 16 38 H 0.15 4.72 8.06 -2.91 -0.02 4.70 16 39 H 0.14 5.28 8.06 -2.91 -0.02 5.25 16 Total: -1.00 -101.70 348.16 4.60 -97.10 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: 0.32 Total: 23.39 kcal Atomic # 6 Polarization: -12.99 SS G_CDS: 8.05 Total: -4.95 kcal Atomic # 7 Polarization: -116.11 SS G_CDS: -6.51 Total: -122.62 kcal Atomic # 8 Polarization: -29.45 SS G_CDS: -0.04 Total: -29.49 kcal Atomic # 9 Polarization: -9.37 SS G_CDS: 0.75 Total: -8.62 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.18 kcal Total: -101.70 4.60 -97.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182746829.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.508 kcal (2) G-P(sol) polarization free energy of solvation -101.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds