Wall clock time and date at job start Sat Apr 11 2020 05:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86805 * 119.99857 * 2 1 4 4 H 1.48497 * 109.46794 * 239.99978 * 3 2 1 5 5 H 1.48498 * 109.47146 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46872 * 119.99923 * 3 2 1 7 7 C 1.38813 * 120.00163 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99981 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00050 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00127 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47373 * 180.02562 * 10 9 7 12 12 C 1.53042 * 109.46350 * 184.99823 * 11 10 9 13 13 C 1.53192 * 109.31300 * 178.61152 * 12 11 10 14 14 N 1.46924 * 108.77594 * 54.63424 * 13 12 11 15 15 C 1.34781 * 120.62993 * 126.11157 * 14 13 12 16 16 O 1.21566 * 119.99710 * 354.44841 * 15 14 13 17 17 C 1.47695 * 119.99852 * 174.44007 * 15 14 13 18 18 C 1.39650 * 120.16188 * 311.42174 * 17 15 14 19 19 C 1.37975 * 119.86165 * 179.72368 * 18 17 15 20 20 Cl 1.73596 * 119.90405 * 180.27449 * 19 18 17 21 21 C 1.38563 * 120.18931 * 0.55198 * 19 18 17 22 22 C 1.38195 * 120.32747 * 359.72103 * 21 19 18 23 23 C 1.38321 * 120.13194 * 0.02562 * 22 21 19 24 24 F 1.35094 * 120.09371 * 179.97438 * 23 22 21 25 25 C 1.46928 * 118.73970 * 306.39454 * 14 13 12 26 26 C 1.53039 * 109.46023 * 64.92556 * 11 10 9 27 27 H 0.96996 * 120.00401 * 359.97438 * 1 2 3 28 28 H 0.96999 * 120.00199 * 359.97438 * 9 7 2 29 29 H 1.08997 * 109.47420 * 59.99463 * 10 9 7 30 30 H 1.09009 * 109.46695 * 299.99905 * 10 9 7 31 31 H 1.09006 * 109.44930 * 304.96706 * 11 10 9 32 32 H 1.09000 * 109.49294 * 58.66284 * 12 11 10 33 33 H 1.08995 * 109.49628 * 298.56470 * 12 11 10 34 34 H 1.08996 * 109.58863 * 294.84917 * 13 12 11 35 35 H 1.08996 * 109.70114 * 174.49043 * 13 12 11 36 36 H 1.07999 * 120.06914 * 359.97438 * 18 17 15 37 37 H 1.07996 * 119.83337 * 179.70436 * 21 19 18 38 38 H 1.07999 * 119.92925 * 179.97438 * 22 21 19 39 39 H 1.09007 * 109.58655 * 173.39685 * 25 14 13 40 40 H 1.09005 * 109.58634 * 293.81585 * 25 14 13 41 41 H 1.08994 * 109.50541 * 301.33983 * 26 11 10 42 42 H 1.08998 * 109.49566 * 61.44330 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0640 -4.8197 -0.0001 12 6 1.8252 -6.1414 0.1256 13 6 0.8248 -7.3011 0.1595 14 7 -0.0409 -7.2136 -1.0244 15 6 -0.1777 -8.2667 -1.8543 16 8 0.4940 -9.2656 -1.6846 17 6 -1.1439 -8.2070 -2.9699 18 6 -2.4538 -7.7803 -2.7415 19 6 -3.3497 -7.7216 -3.7892 20 17 -4.9764 -7.1845 -3.5079 21 6 -2.9563 -8.0954 -5.0642 22 6 -1.6636 -8.5243 -5.2979 23 6 -0.7530 -8.5835 -4.2584 24 9 0.5104 -9.0033 -4.4877 25 6 -0.7497 -5.9542 -1.2898 26 6 0.2684 -4.8096 -1.3074 27 1 -0.4850 0.8400 0.0004 28 1 0.3556 -2.3881 0.0005 29 1 2.6849 -3.7145 0.8904 30 1 2.6848 -3.7144 -0.8895 31 1 0.3800 -4.7130 0.8420 32 1 2.4099 -6.1383 1.0455 33 1 2.4912 -6.2603 -0.7290 34 1 0.2174 -7.2334 1.0620 35 1 1.3615 -8.2497 0.1505 36 1 -2.7639 -7.4931 -1.7477 37 1 -3.6636 -8.0517 -5.8791 38 1 -1.3640 -8.8146 -6.2941 39 1 -1.2501 -6.0132 -2.2564 40 1 -1.4855 -5.7767 -0.5054 41 1 -0.2550 -3.8588 -1.4075 42 1 0.9490 -4.9412 -2.1485 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205646029.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:08 Heat of formation + Delta-G solvation = -51.535797 kcal Electronic energy + Delta-G solvation = -27061.589803 eV Core-core repulsion = 22981.975455 eV Total energy + Delta-G solvation = -4079.614348 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.28288 -40.73953 -39.08053 -37.72366 -36.80356 -35.01169 -33.14993 -32.12193 -30.86717 -30.69427 -30.31430 -26.89857 -24.82423 -23.69451 -23.40853 -22.93184 -21.76039 -20.49402 -19.49410 -18.00810 -17.73033 -17.12807 -17.06619 -16.46731 -15.92991 -15.74801 -15.14261 -14.79257 -14.71650 -14.34858 -14.05599 -13.88658 -13.82531 -13.68213 -13.62113 -13.31582 -12.95954 -12.81392 -12.45839 -12.28040 -12.00220 -11.86362 -11.65483 -11.46477 -11.18766 -11.01603 -10.83597 -10.46191 -10.41006 -10.33652 -10.13735 -10.02780 -9.66163 -9.59057 -9.07110 -8.87904 -8.73454 -6.92844 -5.78029 -3.06125 0.24578 0.48079 1.59948 2.33490 2.68482 3.02350 3.43361 3.47837 3.48691 3.66461 3.96945 4.14068 4.42672 4.57474 4.58306 4.78964 4.91892 4.98376 5.05330 5.11055 5.16761 5.30633 5.39758 5.41891 5.44720 5.52451 5.53024 5.60064 5.73761 5.90229 5.91574 6.05423 6.08676 6.16236 6.24730 6.36450 6.43573 6.58861 6.78095 6.89730 7.17891 7.68912 7.88571 8.41371 9.52549 10.10324 10.45172 11.44873 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.011880 B = 0.002851 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.280975 B = 9817.955590 C =11074.959414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.240 4.240 8 H 0.069 0.931 9 N -0.732 5.732 10 C 0.158 3.842 11 C -0.094 4.094 12 C -0.126 4.126 13 C 0.113 3.887 14 N -0.598 5.598 15 C 0.562 3.438 16 O -0.528 6.528 17 C -0.148 4.148 18 C -0.050 4.050 19 C -0.054 4.054 20 Cl -0.052 7.052 21 C -0.061 4.061 22 C -0.146 4.146 23 C 0.153 3.847 24 F -0.118 7.118 25 C 0.098 3.902 26 C -0.125 4.125 27 H 0.255 0.745 28 H 0.383 0.617 29 H 0.019 0.981 30 H 0.018 0.982 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.151 0.849 37 H 0.149 0.851 38 H 0.153 0.847 39 H 0.084 0.916 40 H 0.075 0.925 41 H 0.091 0.909 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.562 -19.690 -8.520 23.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.371 4.371 8 H 0.087 0.913 9 N -0.376 5.376 10 C 0.031 3.969 11 C -0.113 4.113 12 C -0.165 4.165 13 C -0.009 4.009 14 N -0.330 5.330 15 C 0.349 3.651 16 O -0.405 6.405 17 C -0.153 4.153 18 C -0.069 4.069 19 C -0.081 4.081 20 Cl -0.023 7.023 21 C -0.080 4.080 22 C -0.165 4.165 23 C 0.133 3.867 24 F -0.096 7.096 25 C -0.024 4.024 26 C -0.163 4.163 27 H 0.065 0.935 28 H 0.217 0.783 29 H 0.037 0.963 30 H 0.036 0.964 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.110 0.890 36 H 0.168 0.832 37 H 0.167 0.833 38 H 0.171 0.829 39 H 0.102 0.898 40 H 0.094 0.906 41 H 0.109 0.891 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.159 -20.053 -8.384 23.216 hybrid contribution 0.208 1.100 -0.048 1.120 sum -7.951 -18.954 -8.432 22.216 Atomic orbital electron populations 1.69634 1.05074 1.25749 1.57868 1.24714 0.95517 0.97621 1.03050 0.86277 0.78542 0.83579 0.77854 1.21302 1.21677 1.21297 1.19191 0.91018 0.84243 1.42632 0.91327 1.42358 1.05787 0.99960 1.89501 1.20664 0.93147 0.85338 0.97794 1.21316 0.97898 0.94475 0.97611 1.21917 0.97736 0.93931 1.02915 1.21702 0.92506 1.00419 0.86233 1.48074 1.46627 1.12606 1.25703 1.17913 0.82194 0.83463 0.81528 1.90814 1.45587 1.31755 1.72341 1.19925 0.95558 1.06120 0.93673 1.21123 0.90463 0.95597 0.99742 1.20795 0.87837 1.04532 0.94888 1.98409 1.19005 1.88427 1.96480 1.21086 0.95755 0.95408 0.95750 1.21103 0.92697 1.03237 0.99456 1.17684 0.80283 0.96192 0.92552 1.91593 1.36407 1.86630 1.94937 1.22111 0.95259 0.83003 1.01998 1.21929 0.97936 0.98063 0.98355 0.93490 0.78284 0.96313 0.96433 0.90852 0.90410 0.91474 0.91053 0.89005 0.83156 0.83318 0.82942 0.89824 0.90629 0.89097 0.91741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.70 13.06 55.49 0.72 -26.97 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.24 29.55 -169.99 -5.02 17.21 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.24 -6.64 9.99 -15.06 -0.15 -6.79 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.73 -17.99 5.32 -59.91 -0.32 -18.31 16 10 C 0.16 3.09 5.65 -4.04 -0.02 3.07 16 11 C -0.09 -1.42 2.19 -90.58 -0.20 -1.62 16 12 C -0.13 -1.61 5.36 -26.61 -0.14 -1.75 16 13 C 0.11 1.34 6.44 -3.71 -0.02 1.32 16 14 N -0.60 -7.39 2.97 -173.93 -0.52 -7.91 16 15 C 0.56 7.69 7.00 -12.40 -0.09 7.61 16 16 O -0.53 -8.89 16.03 5.31 0.09 -8.80 16 17 C -0.15 -1.68 4.82 -104.92 -0.51 -2.19 16 18 C -0.05 -0.46 7.34 -39.15 -0.29 -0.74 16 19 C -0.05 -0.44 6.31 -39.56 -0.25 -0.69 16 20 Cl -0.05 -0.42 28.95 -51.86 -1.50 -1.92 16 21 C -0.06 -0.42 9.82 -39.48 -0.39 -0.80 16 22 C -0.15 -1.11 10.01 -39.57 -0.40 -1.51 16 23 C 0.15 1.67 7.25 -38.96 -0.28 1.39 16 24 F -0.12 -1.53 16.49 2.25 0.04 -1.49 16 25 C 0.10 1.13 5.27 -3.71 -0.02 1.11 16 26 C -0.12 -1.79 5.25 -26.61 -0.14 -1.93 16 27 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 28 H 0.38 9.74 6.84 -40.82 -0.28 9.46 16 29 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.02 0.36 8.14 -51.92 -0.42 -0.06 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.09 1.14 6.99 -51.93 -0.36 0.78 16 36 H 0.15 1.22 7.36 -52.49 -0.39 0.83 16 37 H 0.15 0.64 8.06 -52.49 -0.42 0.21 16 38 H 0.15 0.78 8.06 -52.49 -0.42 0.36 16 39 H 0.08 0.88 5.14 -51.93 -0.27 0.61 16 40 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.09 1.49 7.15 -51.93 -0.37 1.12 16 42 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 362.77 15.07 5.47 5.47 Total: -1.00 -32.44 362.77 -9.48 -41.91 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -5.44 Total: 4.80 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -2.99 Total: -4.00 kcal Atomic # 7 Polarization: -53.08 SS G_CDS: -0.11 Total: -53.19 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.09 Total: -8.80 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Atomic # 17 Polarization: -0.42 SS G_CDS: -1.50 Total: -1.92 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.44 -9.48 -41.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205646029.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.623 kcal (2) G-P(sol) polarization free energy of solvation -32.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds