Wall clock time and date at job start Sat Apr 11 2020 05:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86805 * 119.99857 * 2 1 4 4 H 1.48497 * 109.46794 * 239.99978 * 3 2 1 5 5 H 1.48498 * 109.47146 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46872 * 119.99923 * 3 2 1 7 7 C 1.38813 * 120.00163 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99981 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00050 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00127 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47373 * 180.02562 * 10 9 7 12 12 C 1.53042 * 109.46350 * 184.99823 * 11 10 9 13 13 C 1.53192 * 109.31300 * 178.61152 * 12 11 10 14 14 N 1.46924 * 108.77594 * 54.63424 * 13 12 11 15 15 C 1.34781 * 120.62993 * 126.11157 * 14 13 12 16 16 O 1.21566 * 119.99710 * 354.44841 * 15 14 13 17 17 C 1.47695 * 119.99852 * 174.44007 * 15 14 13 18 18 C 1.39650 * 120.16188 * 311.42174 * 17 15 14 19 19 C 1.37975 * 119.86165 * 179.72368 * 18 17 15 20 20 Cl 1.73596 * 119.90405 * 180.27449 * 19 18 17 21 21 C 1.38563 * 120.18931 * 0.55198 * 19 18 17 22 22 C 1.38195 * 120.32747 * 359.72103 * 21 19 18 23 23 C 1.38321 * 120.13194 * 0.02562 * 22 21 19 24 24 F 1.35094 * 120.09371 * 179.97438 * 23 22 21 25 25 C 1.46928 * 118.73970 * 306.39454 * 14 13 12 26 26 C 1.53039 * 109.46023 * 64.92556 * 11 10 9 27 27 H 0.96996 * 120.00401 * 359.97438 * 1 2 3 28 28 H 0.96999 * 120.00199 * 359.97438 * 9 7 2 29 29 H 1.08997 * 109.47420 * 59.99463 * 10 9 7 30 30 H 1.09009 * 109.46695 * 299.99905 * 10 9 7 31 31 H 1.09006 * 109.44930 * 304.96706 * 11 10 9 32 32 H 1.09000 * 109.49294 * 58.66284 * 12 11 10 33 33 H 1.08995 * 109.49628 * 298.56470 * 12 11 10 34 34 H 1.08996 * 109.58863 * 294.84917 * 13 12 11 35 35 H 1.08996 * 109.70114 * 174.49043 * 13 12 11 36 36 H 1.07999 * 120.06914 * 359.97438 * 18 17 15 37 37 H 1.07996 * 119.83337 * 179.70436 * 21 19 18 38 38 H 1.07999 * 119.92925 * 179.97438 * 22 21 19 39 39 H 1.09007 * 109.58655 * 173.39685 * 25 14 13 40 40 H 1.09005 * 109.58634 * 293.81585 * 25 14 13 41 41 H 1.08994 * 109.50541 * 301.33983 * 26 11 10 42 42 H 1.08998 * 109.49566 * 61.44330 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0640 -4.8197 -0.0001 12 6 1.8252 -6.1414 0.1256 13 6 0.8248 -7.3011 0.1595 14 7 -0.0409 -7.2136 -1.0244 15 6 -0.1777 -8.2667 -1.8543 16 8 0.4940 -9.2656 -1.6846 17 6 -1.1439 -8.2070 -2.9699 18 6 -2.4538 -7.7803 -2.7415 19 6 -3.3497 -7.7216 -3.7892 20 17 -4.9764 -7.1845 -3.5079 21 6 -2.9563 -8.0954 -5.0642 22 6 -1.6636 -8.5243 -5.2979 23 6 -0.7530 -8.5835 -4.2584 24 9 0.5104 -9.0033 -4.4877 25 6 -0.7497 -5.9542 -1.2898 26 6 0.2684 -4.8096 -1.3074 27 1 -0.4850 0.8400 0.0004 28 1 0.3556 -2.3881 0.0005 29 1 2.6849 -3.7145 0.8904 30 1 2.6848 -3.7144 -0.8895 31 1 0.3800 -4.7130 0.8420 32 1 2.4099 -6.1383 1.0455 33 1 2.4912 -6.2603 -0.7290 34 1 0.2174 -7.2334 1.0620 35 1 1.3615 -8.2497 0.1505 36 1 -2.7639 -7.4931 -1.7477 37 1 -3.6636 -8.0517 -5.8791 38 1 -1.3640 -8.8146 -6.2941 39 1 -1.2501 -6.0132 -2.2564 40 1 -1.4855 -5.7767 -0.5054 41 1 -0.2550 -3.8588 -1.4075 42 1 0.9490 -4.9412 -2.1485 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205646029.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:08 Heat of formation + Delta-G solvation = -70.074159 kcal Electronic energy + Delta-G solvation = -27062.393687 eV Core-core repulsion = 22981.975455 eV Total energy + Delta-G solvation = -4080.418232 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.14795 -41.69836 -39.88312 -38.89942 -37.45590 -36.60420 -34.62768 -33.20978 -32.04574 -31.78160 -31.42148 -28.33971 -26.07155 -24.90723 -24.55029 -23.83391 -23.07764 -21.68386 -20.53965 -19.21687 -18.79230 -18.50137 -17.93938 -17.41879 -16.79645 -16.72697 -16.53405 -16.14037 -15.70149 -15.46703 -15.37522 -15.33483 -14.92625 -14.68567 -14.47103 -14.45939 -14.08509 -13.94990 -13.66120 -13.57152 -13.14172 -12.93059 -12.73661 -12.71955 -12.38068 -12.24648 -12.20175 -12.08538 -11.95816 -11.70746 -11.58552 -11.35270 -11.13205 -10.91075 -10.32623 -9.83988 -9.72522 -8.97260 -7.93957 -5.21767 -0.47855 -0.18331 0.94895 1.38617 1.48215 1.50359 1.56570 1.78516 2.25784 2.56979 2.94528 3.11435 3.39324 3.49977 3.72670 3.74886 3.81547 3.86264 3.91855 4.06750 4.26617 4.27278 4.32513 4.37962 4.54848 4.55580 4.68069 4.69479 4.75653 4.82668 4.84307 4.91261 4.93000 5.00083 5.06348 5.14384 5.23750 5.41997 5.45950 5.50316 5.52932 6.16505 6.28839 6.86502 7.35870 8.11582 8.36516 9.29009 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.011880 B = 0.002851 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.280975 B = 9817.955590 C =11074.959414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.070 4.070 3 Si 0.969 3.031 4 H -0.280 1.280 5 H -0.293 1.293 6 H -0.279 1.279 7 C -0.249 4.249 8 H 0.070 0.930 9 N -0.741 5.741 10 C 0.157 3.843 11 C -0.083 4.083 12 C -0.117 4.117 13 C 0.114 3.886 14 N -0.596 5.596 15 C 0.559 3.441 16 O -0.568 6.568 17 C -0.167 4.167 18 C -0.050 4.050 19 C -0.055 4.055 20 Cl -0.048 7.048 21 C -0.048 4.048 22 C -0.134 4.134 23 C 0.127 3.873 24 F -0.137 7.137 25 C 0.107 3.893 26 C -0.119 4.119 27 H 0.252 0.748 28 H 0.377 0.623 29 H 0.020 0.980 30 H 0.010 0.990 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.056 0.944 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.159 0.841 37 H 0.181 0.819 38 H 0.180 0.820 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.070 0.930 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.569 -19.993 -9.189 23.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.262 4.262 3 Si 0.799 3.201 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.206 1.206 7 C -0.381 4.381 8 H 0.088 0.912 9 N -0.384 5.384 10 C 0.031 3.969 11 C -0.102 4.102 12 C -0.155 4.155 13 C -0.008 4.008 14 N -0.327 5.327 15 C 0.348 3.652 16 O -0.448 6.448 17 C -0.172 4.172 18 C -0.069 4.069 19 C -0.082 4.082 20 Cl -0.018 7.018 21 C -0.066 4.066 22 C -0.152 4.152 23 C 0.107 3.893 24 F -0.116 7.116 25 C -0.015 4.015 26 C -0.157 4.157 27 H 0.061 0.939 28 H 0.210 0.790 29 H 0.038 0.962 30 H 0.028 0.972 31 H 0.095 0.905 32 H 0.110 0.890 33 H 0.075 0.925 34 H 0.110 0.890 35 H 0.105 0.895 36 H 0.177 0.823 37 H 0.199 0.801 38 H 0.198 0.802 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.088 0.912 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.149 -20.367 -9.048 24.091 hybrid contribution 0.507 1.170 0.128 1.281 sum -8.642 -19.197 -8.920 22.864 Atomic orbital electron populations 1.69776 1.06362 1.26136 1.59270 1.25479 0.96391 1.00773 1.03594 0.85277 0.77305 0.79504 0.78063 1.20650 1.21928 1.20566 1.19568 0.91384 0.85607 1.41576 0.91190 1.42519 1.05685 1.00889 1.89336 1.20801 0.93890 0.85067 0.97181 1.21199 0.97124 0.93796 0.98109 1.21825 0.97654 0.92800 1.03231 1.21737 0.92583 0.99528 0.86920 1.48139 1.46421 1.12563 1.25568 1.18302 0.82091 0.82997 0.81811 1.90781 1.47390 1.33208 1.73420 1.19817 0.95965 1.08217 0.93175 1.21167 0.89729 0.95418 1.00592 1.20919 0.87828 1.04200 0.95211 1.98418 1.18557 1.88348 1.96522 1.21472 0.95785 0.93315 0.96052 1.21400 0.92198 1.01905 0.99745 1.18091 0.80235 0.97485 0.93477 1.91539 1.37850 1.87131 1.95064 1.22092 0.94483 0.81349 1.03550 1.21810 0.98152 0.98300 0.97483 0.93936 0.79026 0.96248 0.97155 0.90522 0.88964 0.92523 0.88969 0.89538 0.82332 0.80128 0.80238 0.88578 0.88698 0.91191 0.92941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.61 13.06 21.65 0.28 -57.33 16 2 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 3 Si 0.97 45.67 29.55 68.60 2.03 47.70 16 4 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 5 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 6 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 7 C -0.25 -13.87 9.99 84.03 0.84 -13.03 16 8 H 0.07 3.78 7.83 -2.91 -0.02 3.76 16 9 N -0.74 -36.74 5.32 -343.45 -1.83 -38.57 16 10 C 0.16 6.14 5.65 86.38 0.49 6.63 16 11 C -0.08 -2.47 2.19 -10.77 -0.02 -2.49 16 12 C -0.12 -2.87 5.36 30.67 0.16 -2.70 16 13 C 0.11 2.59 6.44 86.36 0.56 3.14 16 14 N -0.60 -14.32 2.97 -822.48 -2.44 -16.76 16 15 C 0.56 15.31 7.00 86.74 0.61 15.92 16 16 O -0.57 -19.55 16.03 -3.92 -0.06 -19.61 16 17 C -0.17 -3.70 4.82 -20.06 -0.10 -3.80 16 18 C -0.05 -0.84 7.34 22.55 0.17 -0.67 16 19 C -0.05 -0.76 6.31 22.29 0.14 -0.62 16 20 Cl -0.05 -0.64 28.95 -2.72 -0.08 -0.72 16 21 C -0.05 -0.50 9.82 22.34 0.22 -0.28 16 22 C -0.13 -1.74 10.01 22.28 0.22 -1.51 16 23 C 0.13 2.70 7.25 22.67 0.16 2.86 16 24 F -0.14 -3.64 16.49 44.97 0.74 -2.90 16 25 C 0.11 2.34 5.27 86.36 0.46 2.80 16 26 C -0.12 -3.40 5.25 30.67 0.16 -3.24 16 27 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 28 H 0.38 19.42 6.84 -92.71 -0.63 18.79 16 29 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 31 H 0.08 2.26 8.14 -2.38 -0.02 2.24 16 32 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.09 2.12 6.99 -2.39 -0.02 2.10 16 36 H 0.16 2.30 7.36 -2.91 -0.02 2.27 16 37 H 0.18 0.76 8.06 -2.91 -0.02 0.74 16 38 H 0.18 1.29 8.06 -2.91 -0.02 1.26 16 39 H 0.10 1.90 5.14 -2.38 -0.01 1.89 16 40 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 41 H 0.07 2.32 7.15 -2.39 -0.02 2.30 16 42 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -70.62 362.77 3.59 -67.03 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: 0.42 Total: 21.64 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: 4.53 Total: -0.48 kcal Atomic # 7 Polarization: -108.67 SS G_CDS: -3.99 Total: -112.66 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -0.06 Total: -19.61 kcal Atomic # 9 Polarization: -3.64 SS G_CDS: 0.74 Total: -2.90 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -0.08 Total: -0.72 kcal Total: -70.62 3.59 -67.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205646029.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.047 kcal (2) G-P(sol) polarization free energy of solvation -70.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds