Wall clock time and date at job start Sat Apr 11 2020 05:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 119.99783 * 2 1 4 4 H 1.48501 * 109.46927 * 269.99370 * 3 2 1 5 5 H 1.48492 * 109.47574 * 29.99738 * 3 2 1 6 6 H 1.48507 * 109.47135 * 150.00199 * 3 2 1 7 7 C 1.38807 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00381 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00043 * 0.02562 * 7 2 1 10 10 C 1.46493 * 120.00353 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47305 * 179.97438 * 10 9 7 12 12 C 1.53344 * 109.41905 * 295.12699 * 11 10 9 13 13 C 1.53196 * 109.15231 * 178.67234 * 12 11 10 14 14 N 1.46930 * 108.89060 * 54.57852 * 13 12 11 15 15 C 1.34772 * 120.63065 * 126.29805 * 14 13 12 16 16 O 1.21566 * 120.00168 * 354.40257 * 15 14 13 17 17 C 1.47725 * 119.99920 * 174.39931 * 15 14 13 18 18 C 1.39667 * 120.11221 * 144.66235 * 17 15 14 19 19 C 1.37826 * 119.90373 * 180.02562 * 18 17 15 20 20 C 1.38640 * 120.13529 * 359.97438 * 19 18 17 21 21 F 1.35103 * 119.88686 * 180.02562 * 20 19 18 22 22 C 1.38739 * 120.22782 * 359.97438 * 20 19 18 23 23 Cl 1.73600 * 119.95323 * 180.02562 * 22 20 19 24 24 C 1.37965 * 120.09487 * 359.72355 * 22 20 19 25 25 C 1.46925 * 118.73737 * 306.32196 * 14 13 12 26 26 C 1.53038 * 109.46066 * 175.00049 * 11 10 9 27 27 H 0.97003 * 119.99991 * 0.02562 * 1 2 3 28 28 H 0.97001 * 119.99616 * 359.97438 * 9 7 2 29 29 H 1.08999 * 109.47238 * 59.99756 * 10 9 7 30 30 H 1.09004 * 109.47374 * 299.99843 * 10 9 7 31 31 H 1.08997 * 109.45993 * 55.02771 * 11 10 9 32 32 H 1.09002 * 109.68671 * 58.71001 * 12 11 10 33 33 H 1.08995 * 109.47719 * 298.51314 * 12 11 10 34 34 H 1.09001 * 109.58664 * 294.72677 * 13 12 11 35 35 H 1.08998 * 109.58880 * 174.43673 * 13 12 11 36 36 H 1.08005 * 120.04379 * 359.97438 * 18 17 15 37 37 H 1.08004 * 119.93456 * 179.97438 * 19 18 17 38 38 H 1.07999 * 120.06764 * 180.27737 * 24 22 20 39 39 H 1.08998 * 109.58520 * 173.39330 * 25 14 13 40 40 H 1.08994 * 109.58836 * 293.67937 * 25 14 13 41 41 H 1.08997 * 109.50019 * 61.43540 * 26 11 10 42 42 H 1.09003 * 109.49723 * 301.34052 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0005 11 6 1.0638 -4.8196 0.0012 12 6 0.2663 -4.8078 1.3108 13 6 -0.7498 -5.9542 1.2909 14 7 -0.0410 -7.2135 1.0255 15 6 -0.1818 -8.2682 1.8526 16 8 -0.8179 -8.1527 2.8821 17 6 0.4368 -9.5648 1.5082 18 6 0.9549 -10.3832 2.5143 19 6 1.5316 -11.5918 2.1880 20 6 1.5978 -11.9964 0.8636 21 9 2.1637 -13.1823 0.5495 22 6 1.0839 -11.1882 -0.1402 23 17 1.1699 -11.7023 -1.7961 24 6 0.4990 -9.9795 0.1764 25 6 0.8246 -7.3010 -0.1585 26 6 1.8251 -6.1413 -0.1246 27 1 -0.4850 0.8401 -0.0004 28 1 0.3556 -2.3880 0.0005 29 1 2.6848 -3.7144 0.8905 30 1 2.6847 -3.7145 -0.8895 31 1 0.3798 -4.7131 -0.8407 32 1 -0.2588 -3.8580 1.4124 33 1 0.9468 -4.9395 2.1520 34 1 -1.4855 -5.7767 0.5065 35 1 -1.2521 -6.0141 2.2564 36 1 0.9045 -10.0691 3.5464 37 1 1.9328 -12.2249 2.9656 38 1 0.0951 -9.3527 -0.6050 39 1 1.3632 -8.2485 -0.1481 40 1 0.2170 -7.2358 -1.0610 41 1 2.4911 -6.2603 0.7300 42 1 2.4098 -6.1382 -1.0445 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206073875.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:10 Heat of formation + Delta-G solvation = -44.682146 kcal Electronic energy + Delta-G solvation = -26668.076571 eV Core-core repulsion = 22588.759419 eV Total energy + Delta-G solvation = -4079.317151 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.51462 -40.96007 -39.00210 -37.74738 -36.97508 -35.09591 -33.07247 -32.03961 -31.35696 -30.76730 -30.14170 -26.90288 -24.63553 -24.08940 -23.51300 -22.79698 -21.82292 -20.55580 -19.51257 -18.23829 -17.94705 -17.18950 -17.00211 -16.38270 -16.16273 -15.52668 -15.34310 -14.93756 -14.60325 -14.51238 -14.25448 -13.99777 -13.80497 -13.63368 -13.55006 -13.29139 -13.20561 -12.82052 -12.46940 -12.25125 -12.02808 -11.90862 -11.82659 -11.53200 -11.25392 -11.01975 -10.84644 -10.55381 -10.41857 -10.22483 -10.13662 -10.00392 -9.70514 -9.50035 -9.27086 -8.88520 -8.75216 -6.93039 -5.78100 -3.06391 0.10854 0.41838 1.44018 2.27734 2.68876 3.06385 3.42601 3.43562 3.47905 3.49519 3.94984 4.05780 4.40328 4.48843 4.56453 4.69082 4.85923 4.89948 4.96341 5.10970 5.17025 5.20778 5.28306 5.39077 5.43541 5.50360 5.57724 5.60585 5.72830 5.86716 5.91617 5.99624 6.05353 6.12052 6.24310 6.30436 6.45341 6.63850 6.76287 6.88225 7.17228 7.68862 7.87805 8.41228 9.52392 10.10325 10.44772 11.44866 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.021505 B = 0.002224 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.722833 B =12585.060029 C =13192.565945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.069 0.931 9 N -0.732 5.732 10 C 0.159 3.841 11 C -0.095 4.095 12 C -0.124 4.124 13 C 0.110 3.890 14 N -0.598 5.598 15 C 0.560 3.440 16 O -0.532 6.532 17 C -0.124 4.124 18 C -0.031 4.031 19 C -0.147 4.147 20 C 0.130 3.870 21 F -0.122 7.122 22 C -0.083 4.083 23 Cl -0.041 7.041 24 C -0.056 4.056 25 C 0.092 3.908 26 C -0.127 4.127 27 H 0.255 0.745 28 H 0.384 0.616 29 H 0.018 0.982 30 H 0.018 0.982 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.151 0.849 37 H 0.153 0.847 38 H 0.156 0.844 39 H 0.090 0.910 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.619 -27.131 0.377 27.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.087 0.913 9 N -0.376 5.376 10 C 0.031 3.969 11 C -0.114 4.114 12 C -0.162 4.162 13 C -0.011 4.011 14 N -0.331 5.331 15 C 0.348 3.652 16 O -0.410 6.410 17 C -0.128 4.128 18 C -0.050 4.050 19 C -0.166 4.166 20 C 0.110 3.890 21 F -0.100 7.100 22 C -0.111 4.111 23 Cl -0.012 7.012 24 C -0.075 4.075 25 C -0.031 4.031 26 C -0.165 4.165 27 H 0.065 0.935 28 H 0.218 0.782 29 H 0.035 0.965 30 H 0.036 0.964 31 H 0.091 0.909 32 H 0.108 0.892 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.111 0.889 36 H 0.169 0.831 37 H 0.171 0.829 38 H 0.174 0.826 39 H 0.108 0.892 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.435 -27.010 0.762 27.059 hybrid contribution 0.366 0.725 -0.379 0.896 sum 1.801 -26.286 0.383 26.350 Atomic orbital electron populations 1.69650 1.05090 1.25659 1.57875 1.24729 0.95527 0.97675 1.03074 0.86196 0.78661 0.83875 0.77503 1.21744 1.21766 1.20797 1.19223 0.91018 0.84219 1.42550 0.91276 1.42369 1.05831 0.99967 1.89462 1.20657 0.93128 0.85404 0.97717 1.21377 0.97876 0.94257 0.97870 1.21977 0.98005 0.98249 0.97949 1.21802 0.94629 0.81780 1.02897 1.48068 1.46215 1.12918 1.25872 1.18038 0.80556 0.83289 0.83341 1.90810 1.41835 1.83950 1.24413 1.19986 1.03055 0.96607 0.93154 1.21214 0.92173 0.91350 1.00225 1.21135 1.02935 0.98288 0.94211 1.17645 0.96398 0.82279 0.92705 1.91571 1.81939 1.42966 1.93558 1.20856 1.06651 0.96873 0.86733 1.98415 1.97109 1.90512 1.15167 1.21388 0.95915 0.93585 0.96581 1.22305 0.92833 1.00347 0.87582 1.21922 0.97593 0.94065 1.02948 0.93513 0.78248 0.96455 0.96398 0.90878 0.89187 0.91751 0.91024 0.88925 0.83123 0.82904 0.82633 0.89208 0.90650 0.91372 0.90340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.91 13.06 55.49 0.72 -27.18 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.24 -6.61 9.99 -15.06 -0.15 -6.76 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.73 -17.98 5.32 -59.91 -0.32 -18.30 16 10 C 0.16 3.04 5.65 -4.04 -0.02 3.01 16 11 C -0.09 -1.38 2.19 -90.42 -0.20 -1.58 16 12 C -0.12 -1.82 5.27 -26.45 -0.14 -1.96 16 13 C 0.11 1.40 6.43 -3.71 -0.02 1.38 16 14 N -0.60 -6.81 2.97 -173.92 -0.52 -7.33 16 15 C 0.56 6.79 7.38 -12.39 -0.09 6.70 16 16 O -0.53 -8.21 16.25 5.31 0.09 -8.12 16 17 C -0.12 -1.16 5.29 -104.97 -0.55 -1.72 16 18 C -0.03 -0.24 9.61 -39.20 -0.38 -0.62 16 19 C -0.15 -0.99 10.01 -39.58 -0.40 -1.38 16 20 C 0.13 1.05 7.28 -39.25 -0.29 0.76 16 21 F -0.12 -1.06 16.83 2.25 0.04 -1.02 16 22 C -0.08 -0.68 6.32 -39.50 -0.25 -0.93 16 23 Cl -0.04 -0.33 28.60 -51.86 -1.48 -1.82 16 24 C -0.06 -0.45 7.13 -39.16 -0.28 -0.73 16 25 C 0.09 0.85 4.78 -3.71 -0.02 0.83 16 26 C -0.13 -1.41 5.36 -26.61 -0.14 -1.55 16 27 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 28 H 0.38 9.81 6.85 -40.82 -0.28 9.53 16 29 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.09 1.54 7.16 -51.93 -0.37 1.16 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.09 1.26 6.99 -51.93 -0.36 0.90 16 36 H 0.15 1.09 8.00 -52.48 -0.42 0.67 16 37 H 0.15 0.66 8.06 -52.48 -0.42 0.23 16 38 H 0.16 1.07 6.06 -52.49 -0.32 0.75 16 39 H 0.09 0.70 4.46 -51.93 -0.23 0.46 16 40 H 0.08 0.61 8.05 -51.93 -0.42 0.19 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 360.86 15.07 5.44 5.44 Total: -1.00 -31.95 360.86 -9.41 -41.36 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -5.33 Total: 4.77 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -3.02 Total: -5.05 kcal Atomic # 7 Polarization: -52.70 SS G_CDS: -0.11 Total: -52.82 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: 0.09 Total: -8.12 kcal Atomic # 9 Polarization: -1.06 SS G_CDS: 0.04 Total: -1.02 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -1.48 Total: -1.82 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.95 -9.41 -41.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206073875.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.324 kcal (2) G-P(sol) polarization free energy of solvation -31.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds