Wall clock time and date at job start Sat Apr 11 2020 05:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 119.99783 * 2 1 4 4 H 1.48501 * 109.46927 * 269.99370 * 3 2 1 5 5 H 1.48492 * 109.47574 * 29.99738 * 3 2 1 6 6 H 1.48507 * 109.47135 * 150.00199 * 3 2 1 7 7 C 1.38807 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00381 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00043 * 0.02562 * 7 2 1 10 10 C 1.46493 * 120.00353 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47305 * 179.97438 * 10 9 7 12 12 C 1.53344 * 109.41905 * 295.12699 * 11 10 9 13 13 C 1.53196 * 109.15231 * 178.67234 * 12 11 10 14 14 N 1.46930 * 108.89060 * 54.57852 * 13 12 11 15 15 C 1.34772 * 120.63065 * 126.29805 * 14 13 12 16 16 O 1.21566 * 120.00168 * 354.40257 * 15 14 13 17 17 C 1.47725 * 119.99920 * 174.39931 * 15 14 13 18 18 C 1.39667 * 120.11221 * 144.66235 * 17 15 14 19 19 C 1.37826 * 119.90373 * 180.02562 * 18 17 15 20 20 C 1.38640 * 120.13529 * 359.97438 * 19 18 17 21 21 F 1.35103 * 119.88686 * 180.02562 * 20 19 18 22 22 C 1.38739 * 120.22782 * 359.97438 * 20 19 18 23 23 Cl 1.73600 * 119.95323 * 180.02562 * 22 20 19 24 24 C 1.37965 * 120.09487 * 359.72355 * 22 20 19 25 25 C 1.46925 * 118.73737 * 306.32196 * 14 13 12 26 26 C 1.53038 * 109.46066 * 175.00049 * 11 10 9 27 27 H 0.97003 * 119.99991 * 0.02562 * 1 2 3 28 28 H 0.97001 * 119.99616 * 359.97438 * 9 7 2 29 29 H 1.08999 * 109.47238 * 59.99756 * 10 9 7 30 30 H 1.09004 * 109.47374 * 299.99843 * 10 9 7 31 31 H 1.08997 * 109.45993 * 55.02771 * 11 10 9 32 32 H 1.09002 * 109.68671 * 58.71001 * 12 11 10 33 33 H 1.08995 * 109.47719 * 298.51314 * 12 11 10 34 34 H 1.09001 * 109.58664 * 294.72677 * 13 12 11 35 35 H 1.08998 * 109.58880 * 174.43673 * 13 12 11 36 36 H 1.08005 * 120.04379 * 359.97438 * 18 17 15 37 37 H 1.08004 * 119.93456 * 179.97438 * 19 18 17 38 38 H 1.07999 * 120.06764 * 180.27737 * 24 22 20 39 39 H 1.08998 * 109.58520 * 173.39330 * 25 14 13 40 40 H 1.08994 * 109.58836 * 293.67937 * 25 14 13 41 41 H 1.08997 * 109.50019 * 61.43540 * 26 11 10 42 42 H 1.09003 * 109.49723 * 301.34052 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0005 11 6 1.0638 -4.8196 0.0012 12 6 0.2663 -4.8078 1.3108 13 6 -0.7498 -5.9542 1.2909 14 7 -0.0410 -7.2135 1.0255 15 6 -0.1818 -8.2682 1.8526 16 8 -0.8179 -8.1527 2.8821 17 6 0.4368 -9.5648 1.5082 18 6 0.9549 -10.3832 2.5143 19 6 1.5316 -11.5918 2.1880 20 6 1.5978 -11.9964 0.8636 21 9 2.1637 -13.1823 0.5495 22 6 1.0839 -11.1882 -0.1402 23 17 1.1699 -11.7023 -1.7961 24 6 0.4990 -9.9795 0.1764 25 6 0.8246 -7.3010 -0.1585 26 6 1.8251 -6.1413 -0.1246 27 1 -0.4850 0.8401 -0.0004 28 1 0.3556 -2.3880 0.0005 29 1 2.6848 -3.7144 0.8905 30 1 2.6847 -3.7145 -0.8895 31 1 0.3798 -4.7131 -0.8407 32 1 -0.2588 -3.8580 1.4124 33 1 0.9468 -4.9395 2.1520 34 1 -1.4855 -5.7767 0.5065 35 1 -1.2521 -6.0141 2.2564 36 1 0.9045 -10.0691 3.5464 37 1 1.9328 -12.2249 2.9656 38 1 0.0951 -9.3527 -0.6050 39 1 1.3632 -8.2485 -0.1481 40 1 0.2170 -7.2358 -1.0610 41 1 2.4911 -6.2603 0.7300 42 1 2.4098 -6.1382 -1.0445 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206073875.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:10 Heat of formation + Delta-G solvation = -62.788213 kcal Electronic energy + Delta-G solvation = -26668.861709 eV Core-core repulsion = 22588.759419 eV Total energy + Delta-G solvation = -4080.102289 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.14748 -41.81527 -39.79359 -38.81883 -37.60928 -36.63159 -34.60015 -32.98875 -32.25441 -32.01395 -31.24715 -28.30858 -25.92435 -25.06463 -24.55479 -23.72451 -23.13857 -21.64704 -20.51659 -19.24456 -18.87112 -18.60918 -17.85803 -17.18646 -16.90589 -16.71265 -16.31425 -16.15957 -15.75506 -15.45822 -15.40138 -15.20203 -15.06643 -14.66378 -14.50243 -14.21860 -14.13194 -13.93476 -13.80758 -13.46431 -13.11982 -12.92036 -12.75115 -12.64095 -12.55926 -12.24782 -12.16931 -12.10729 -11.97351 -11.67298 -11.48722 -11.39230 -11.05112 -10.90752 -10.13950 -9.96601 -9.69701 -8.97442 -7.94702 -5.22521 -0.55419 -0.16425 0.82769 1.46533 1.47442 1.48717 1.57112 1.81770 2.33999 2.56451 2.83324 3.20483 3.38996 3.46914 3.72119 3.80029 3.83163 3.88309 3.91984 4.08823 4.24921 4.27440 4.34065 4.40910 4.53885 4.60406 4.61693 4.71620 4.75971 4.83557 4.85134 4.97415 4.98325 5.02855 5.09510 5.17035 5.28006 5.40493 5.47867 5.52299 5.55637 6.26821 6.28525 6.95218 7.34865 8.12271 8.35019 9.28803 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.021505 B = 0.002224 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.722833 B =12585.060029 C =13192.565945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.075 4.075 3 Si 0.971 3.029 4 H -0.286 1.286 5 H -0.296 1.296 6 H -0.271 1.271 7 C -0.244 4.244 8 H 0.073 0.927 9 N -0.744 5.744 10 C 0.156 3.844 11 C -0.085 4.085 12 C -0.116 4.116 13 C 0.118 3.882 14 N -0.598 5.598 15 C 0.560 3.440 16 O -0.573 6.573 17 C -0.135 4.135 18 C -0.031 4.031 19 C -0.134 4.134 20 C 0.125 3.875 21 F -0.126 7.126 22 C -0.087 4.087 23 Cl -0.041 7.041 24 C -0.050 4.050 25 C 0.093 3.907 26 C -0.120 4.120 27 H 0.251 0.749 28 H 0.375 0.625 29 H 0.012 0.988 30 H 0.023 0.977 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.052 0.948 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.155 0.845 37 H 0.180 0.820 38 H 0.169 0.831 39 H 0.112 0.888 40 H 0.097 0.903 41 H 0.064 0.936 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.865 -28.898 -0.369 29.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.268 4.268 3 Si 0.800 3.200 4 H -0.213 1.213 5 H -0.223 1.223 6 H -0.196 1.196 7 C -0.376 4.376 8 H 0.091 0.909 9 N -0.387 5.387 10 C 0.030 3.970 11 C -0.103 4.103 12 C -0.154 4.154 13 C -0.004 4.004 14 N -0.329 5.329 15 C 0.349 3.651 16 O -0.454 6.454 17 C -0.139 4.139 18 C -0.050 4.050 19 C -0.152 4.152 20 C 0.105 3.895 21 F -0.104 7.104 22 C -0.115 4.115 23 Cl -0.012 7.012 24 C -0.068 4.068 25 C -0.028 4.028 26 C -0.158 4.158 27 H 0.060 0.940 28 H 0.208 0.792 29 H 0.030 0.970 30 H 0.041 0.959 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.173 0.827 37 H 0.197 0.803 38 H 0.186 0.814 39 H 0.129 0.871 40 H 0.115 0.885 41 H 0.083 0.917 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.729 -28.813 -0.008 28.942 hybrid contribution 0.030 1.198 -0.131 1.205 sum 2.758 -27.616 -0.140 27.753 Atomic orbital electron populations 1.69802 1.06516 1.26031 1.59598 1.25531 0.96396 1.00997 1.03834 0.85174 0.77683 0.79656 0.77461 1.21309 1.22257 1.19614 1.19620 0.91438 0.85538 1.41037 0.90905 1.42585 1.05693 1.01131 1.89282 1.20840 0.93902 0.84930 0.97337 1.21273 0.97066 0.94471 0.97528 1.21822 0.98041 0.97750 0.97785 1.21592 0.94202 0.81792 1.02799 1.48115 1.46161 1.12177 1.26427 1.18433 0.79895 0.84156 0.82605 1.90788 1.43669 1.84734 1.26160 1.19798 1.04281 0.95644 0.94172 1.21332 0.91916 0.91523 1.00246 1.21339 1.01752 0.97815 0.94344 1.17834 0.96322 0.82124 0.93220 1.91566 1.82011 1.43223 1.93634 1.20897 1.06806 0.96979 0.86820 1.98418 1.97115 1.90507 1.15177 1.21401 0.95554 0.93678 0.96216 1.22497 0.92555 1.00422 0.87365 1.21878 0.97718 0.92387 1.03826 0.94020 0.79236 0.97022 0.95861 0.90845 0.92186 0.92895 0.89778 0.90219 0.82705 0.80292 0.81397 0.87057 0.88521 0.91697 0.88418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.95 13.06 21.65 0.28 -58.67 16 2 C -0.08 -4.32 5.50 84.86 0.47 -3.85 16 3 Si 0.97 46.04 29.55 68.60 2.03 48.07 16 4 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 5 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 6 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.24 -13.59 9.99 84.03 0.84 -12.75 16 8 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 9 N -0.74 -37.02 5.32 -343.46 -1.83 -38.84 16 10 C 0.16 5.93 5.65 86.38 0.49 6.42 16 11 C -0.08 -2.40 2.19 -10.66 -0.02 -2.42 16 12 C -0.12 -3.46 5.27 30.78 0.16 -3.30 16 13 C 0.12 2.98 6.43 86.36 0.56 3.54 16 14 N -0.60 -12.80 2.97 -822.44 -2.45 -15.25 16 15 C 0.56 13.02 7.38 86.75 0.64 13.66 16 16 O -0.57 -17.71 16.25 -3.92 -0.06 -17.77 16 17 C -0.14 -2.28 5.29 -20.09 -0.11 -2.39 16 18 C -0.03 -0.43 9.61 22.52 0.22 -0.22 16 19 C -0.13 -1.44 10.01 22.27 0.22 -1.22 16 20 C 0.13 1.71 7.28 22.49 0.16 1.87 16 21 F -0.13 -1.91 16.83 44.97 0.76 -1.16 16 22 C -0.09 -1.22 6.32 22.32 0.14 -1.08 16 23 Cl -0.04 -0.58 28.60 -2.72 -0.08 -0.66 16 24 C -0.05 -0.67 7.13 22.54 0.16 -0.51 16 25 C 0.09 1.46 4.78 86.36 0.41 1.87 16 26 C -0.12 -2.38 5.36 30.67 0.16 -2.21 16 27 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 28 H 0.38 19.71 6.85 -92.71 -0.63 19.07 16 29 H 0.01 0.46 8.14 -2.39 -0.02 0.45 16 30 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.06 2.15 7.16 -2.39 -0.02 2.14 16 33 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.08 2.24 6.99 -2.39 -0.02 2.22 16 36 H 0.16 2.01 8.00 -2.91 -0.02 1.99 16 37 H 0.18 0.94 8.06 -2.91 -0.02 0.92 16 38 H 0.17 1.79 6.06 -2.91 -0.02 1.77 16 39 H 0.11 1.35 4.46 -2.39 -0.01 1.34 16 40 H 0.10 1.19 8.05 -2.39 -0.02 1.17 16 41 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -69.47 360.86 3.59 -65.88 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: 0.43 Total: 20.96 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: 4.50 Total: -2.57 kcal Atomic # 7 Polarization: -108.77 SS G_CDS: -3.99 Total: -112.76 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -0.06 Total: -17.77 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.76 Total: -1.16 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -0.08 Total: -0.66 kcal Total: -69.47 3.59 -65.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206073875.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.097 kcal (2) G-P(sol) polarization free energy of solvation -69.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds