Wall clock time and date at job start Sat Apr 11 2020 05:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00316 * 2 1 4 4 H 1.48504 * 109.47143 * 269.99951 * 3 2 1 5 5 H 1.48500 * 109.46941 * 30.00132 * 3 2 1 6 6 H 1.48497 * 109.46853 * 150.00357 * 3 2 1 7 7 C 1.38813 * 119.99494 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99826 * 179.97438 * 7 2 1 9 9 N 1.36941 * 120.00147 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99964 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47097 * 179.97438 * 10 9 7 12 12 C 1.53070 * 109.44958 * 64.79148 * 11 10 9 13 13 C 1.53195 * 109.29059 * 181.24494 * 12 11 10 14 14 N 1.46928 * 108.89024 * 305.57353 * 13 12 11 15 15 C 1.34778 * 120.62855 * 233.51596 * 14 13 12 16 16 O 1.21569 * 119.99670 * 174.85538 * 15 14 13 17 17 C 1.47690 * 120.00411 * 354.85450 * 15 14 13 18 18 C 1.39674 * 120.15849 * 313.37660 * 17 15 14 19 19 C 1.37861 * 119.89898 * 179.76449 * 18 17 15 20 20 C 1.38454 * 120.22790 * 0.51075 * 19 18 17 21 21 C 1.38297 * 120.32667 * 359.73722 * 20 19 18 22 22 Cl 1.73598 * 119.95143 * 180.02562 * 21 20 19 23 23 C 1.38427 * 120.09569 * 0.02562 * 21 20 19 24 24 F 1.35100 * 120.11957 * 179.97438 * 23 21 20 25 25 C 1.46920 * 118.73723 * 53.54358 * 14 13 12 26 26 C 1.53039 * 109.45831 * 185.00380 * 11 10 9 27 27 H 0.96998 * 119.99685 * 359.97438 * 1 2 3 28 28 H 0.96996 * 119.99757 * 359.97438 * 9 7 2 29 29 H 1.09004 * 109.46836 * 59.99505 * 10 9 7 30 30 H 1.09000 * 109.46873 * 300.00054 * 10 9 7 31 31 H 1.08998 * 109.44758 * 304.96674 * 11 10 9 32 32 H 1.08993 * 109.39334 * 61.37032 * 12 11 10 33 33 H 1.09008 * 109.62337 * 301.25555 * 12 11 10 34 34 H 1.09003 * 109.58267 * 185.72134 * 13 12 11 35 35 H 1.09001 * 109.58876 * 65.43951 * 13 12 11 36 36 H 1.07995 * 120.05304 * 0.02562 * 18 17 15 37 37 H 1.08004 * 119.88526 * 180.26977 * 19 18 17 38 38 H 1.08003 * 119.83178 * 179.72610 * 20 19 18 39 39 H 1.09005 * 109.59024 * 66.17524 * 25 14 13 40 40 H 1.09003 * 109.58830 * 186.45501 * 25 14 13 41 41 H 1.08996 * 109.49838 * 58.66213 * 26 11 10 42 42 H 1.09002 * 109.49271 * 298.56653 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4399 0.7000 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0016 10 6 2.0578 -3.6569 -0.0027 11 6 1.0635 -4.8198 -0.0031 12 6 0.2645 -4.8068 -1.3087 13 6 -0.7511 -5.9536 -1.2920 14 7 -0.0421 -7.2131 -1.0277 15 6 -0.1844 -8.2677 -1.8547 16 8 0.4782 -9.2717 -1.6789 17 6 -1.1451 -8.2038 -2.9746 18 6 -2.4405 -7.7267 -2.7615 19 6 -3.3314 -7.6647 -3.8117 20 6 -2.9500 -8.0837 -5.0750 21 6 -1.6715 -8.5626 -5.2955 22 17 -1.2034 -9.0847 -6.8835 23 6 -0.7644 -8.6261 -4.2517 24 9 0.4845 -9.0942 -4.4664 25 6 0.8243 -7.3011 0.1556 26 6 1.8248 -6.1415 0.1215 27 1 -0.4849 0.8401 0.0004 28 1 0.3554 -2.3880 -0.0016 29 1 2.6845 -3.7154 0.8872 30 1 2.6845 -3.7139 -0.8928 31 1 0.3803 -4.7134 0.8395 32 1 0.9447 -4.9355 -2.1506 33 1 -0.2610 -3.8568 -1.4068 34 1 -1.2520 -6.0121 -2.2583 35 1 -1.4881 -5.7776 -0.5084 36 1 -2.7423 -7.4028 -1.7764 37 1 -4.3316 -7.2917 -3.6476 38 1 -3.6546 -8.0365 -5.8922 39 1 0.2176 -7.2338 1.0587 40 1 1.3609 -8.2499 0.1458 41 1 2.4101 -6.1389 1.0410 42 1 2.4902 -6.2601 -0.7336 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206117958.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:12 Heat of formation + Delta-G solvation = -68.541447 kcal Electronic energy + Delta-G solvation = -27053.055588 eV Core-core repulsion = 22972.703820 eV Total energy + Delta-G solvation = -4080.351768 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.19070 -41.67663 -39.83047 -38.88118 -37.63997 -36.59560 -34.60059 -33.08709 -32.00698 -31.71162 -31.55043 -28.33051 -26.05815 -24.86252 -24.55611 -23.75570 -23.09694 -21.67928 -20.52611 -19.21613 -18.84135 -18.45788 -17.94514 -17.38447 -16.87374 -16.71281 -16.35184 -16.14522 -15.79947 -15.54192 -15.41724 -15.33498 -15.00235 -14.61903 -14.42735 -14.28116 -14.05524 -13.94087 -13.57036 -13.36967 -13.15637 -12.93484 -12.76285 -12.72315 -12.58684 -12.23588 -12.19602 -12.13370 -11.96107 -11.69480 -11.55828 -11.34576 -11.08966 -10.91167 -10.17009 -9.86810 -9.75381 -8.96856 -7.94206 -5.21566 -0.43327 -0.19070 0.81390 1.43338 1.48486 1.49146 1.57543 1.81889 2.33230 2.56865 2.84955 3.14364 3.39268 3.65226 3.73959 3.75985 3.78432 3.88862 4.02404 4.08899 4.23791 4.29648 4.36427 4.40975 4.56260 4.68146 4.69732 4.71964 4.77742 4.83427 4.94689 4.97360 5.01445 5.06685 5.09807 5.15399 5.25551 5.46647 5.49699 5.53222 5.54090 6.19292 6.29247 6.89380 7.36265 8.11617 8.37150 9.28974 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.014167 B = 0.002601 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.883066 B =10762.580658 C =11625.059041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.070 4.070 3 Si 0.968 3.032 4 H -0.288 1.288 5 H -0.293 1.293 6 H -0.273 1.273 7 C -0.247 4.247 8 H 0.069 0.931 9 N -0.740 5.740 10 C 0.156 3.844 11 C -0.083 4.083 12 C -0.121 4.121 13 C 0.105 3.895 14 N -0.595 5.595 15 C 0.558 3.442 16 O -0.572 6.572 17 C -0.170 4.170 18 C -0.050 4.050 19 C -0.102 4.102 20 C -0.052 4.052 21 C -0.091 4.091 22 Cl -0.050 7.050 23 C 0.123 3.877 24 F -0.136 7.136 25 C 0.114 3.886 26 C -0.117 4.117 27 H 0.252 0.748 28 H 0.378 0.622 29 H 0.019 0.981 30 H 0.008 0.992 31 H 0.079 0.921 32 H 0.047 0.953 33 H 0.072 0.928 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.171 0.829 37 H 0.191 0.809 38 H 0.179 0.821 39 H 0.095 0.905 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.170 -19.130 -7.872 23.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.263 4.263 3 Si 0.798 3.202 4 H -0.215 1.215 5 H -0.219 1.219 6 H -0.199 1.199 7 C -0.379 4.379 8 H 0.087 0.913 9 N -0.384 5.384 10 C 0.030 3.970 11 C -0.102 4.102 12 C -0.159 4.159 13 C -0.016 4.016 14 N -0.326 5.326 15 C 0.347 3.653 16 O -0.453 6.453 17 C -0.174 4.174 18 C -0.069 4.069 19 C -0.120 4.120 20 C -0.071 4.071 21 C -0.119 4.119 22 Cl -0.021 7.021 23 C 0.102 3.898 24 F -0.115 7.115 25 C -0.007 4.007 26 C -0.156 4.156 27 H 0.061 0.939 28 H 0.211 0.789 29 H 0.037 0.963 30 H 0.026 0.974 31 H 0.097 0.903 32 H 0.066 0.934 33 H 0.091 0.909 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.188 0.812 37 H 0.208 0.792 38 H 0.197 0.803 39 H 0.113 0.887 40 H 0.101 0.899 41 H 0.110 0.890 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.546 -19.610 -7.898 23.625 hybrid contribution 1.064 0.903 -0.337 1.435 sum -9.482 -18.707 -8.235 22.531 Atomic orbital electron populations 1.69777 1.06277 1.26056 1.59346 1.25466 0.96430 1.00709 1.03674 0.85217 0.77735 0.79891 0.77377 1.21538 1.21928 1.19859 1.19583 0.91335 0.85618 1.41386 0.91321 1.42515 1.05721 1.00832 1.89294 1.20805 0.93954 0.85185 0.97065 1.21198 0.97088 0.93554 0.98326 1.21832 0.98238 0.98591 0.97247 1.22184 0.94474 0.80955 1.04030 1.48115 1.46367 1.12475 1.25636 1.18328 0.81990 0.83063 0.81931 1.90784 1.47781 1.33125 1.73590 1.19933 0.97912 1.07876 0.91693 1.21759 0.89416 0.93272 1.02420 1.21676 1.01935 0.98199 0.90174 1.21655 0.92286 0.93060 1.00062 1.21099 0.96379 1.07900 0.86533 1.98399 1.92524 1.89153 1.22016 1.17701 0.80217 0.98668 0.93191 1.91532 1.38896 1.85741 1.95300 1.21721 0.92598 0.99310 0.87087 1.21826 0.97708 0.93014 1.03058 0.93911 0.78914 0.96336 0.97365 0.90253 0.93392 0.90941 0.88042 0.88000 0.81204 0.79155 0.80343 0.88687 0.89863 0.89043 0.92862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.87 13.06 21.65 0.28 -56.59 16 2 C -0.07 -3.94 5.50 84.86 0.47 -3.48 16 3 Si 0.97 45.45 29.55 68.60 2.03 47.48 16 4 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 5 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 6 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 7 C -0.25 -13.65 9.99 84.03 0.84 -12.81 16 8 H 0.07 3.71 7.83 -2.91 -0.02 3.69 16 9 N -0.74 -36.28 5.32 -343.43 -1.83 -38.10 16 10 C 0.16 6.08 5.65 86.38 0.49 6.57 16 11 C -0.08 -2.40 2.18 -10.76 -0.02 -2.42 16 12 C -0.12 -3.32 5.25 30.68 0.16 -3.16 16 13 C 0.11 2.07 5.15 86.36 0.44 2.52 16 14 N -0.59 -13.74 2.97 -822.48 -2.45 -16.19 16 15 C 0.56 15.20 7.05 86.74 0.61 15.81 16 16 O -0.57 -20.14 15.95 -3.93 -0.06 -20.20 16 17 C -0.17 -3.71 4.91 -20.06 -0.10 -3.81 16 18 C -0.05 -0.63 7.48 22.53 0.17 -0.46 16 19 C -0.10 -0.77 10.03 22.23 0.22 -0.55 16 20 C -0.05 -0.55 9.82 22.34 0.22 -0.33 16 21 C -0.09 -1.68 6.32 22.33 0.14 -1.54 16 22 Cl -0.05 -0.94 28.61 -2.72 -0.08 -1.02 16 23 C 0.12 3.00 7.23 22.69 0.16 3.17 16 24 F -0.14 -4.20 16.00 44.97 0.72 -3.48 16 25 C 0.11 2.55 6.44 86.36 0.56 3.10 16 26 C -0.12 -2.87 5.37 30.67 0.16 -2.71 16 27 H 0.25 14.41 8.31 -92.71 -0.77 13.63 16 28 H 0.38 19.10 6.84 -92.71 -0.63 18.46 16 29 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.07 2.29 7.15 -2.38 -0.02 2.28 16 34 H 0.10 1.71 5.02 -2.39 -0.01 1.70 16 35 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.17 1.33 7.16 -2.91 -0.02 1.31 16 37 H 0.19 -0.07 8.06 -2.91 -0.02 -0.09 16 38 H 0.18 0.77 8.06 -2.91 -0.02 0.75 16 39 H 0.10 1.70 8.14 -2.38 -0.02 1.68 16 40 H 0.08 2.05 6.99 -2.39 -0.02 2.04 16 41 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -73.94 361.70 3.57 -70.37 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: 0.42 Total: 17.83 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: 4.53 Total: -0.11 kcal Atomic # 7 Polarization: -106.89 SS G_CDS: -3.99 Total: -110.88 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -0.06 Total: -20.20 kcal Atomic # 9 Polarization: -4.20 SS G_CDS: 0.72 Total: -3.48 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -0.08 Total: -1.02 kcal Total: -73.94 3.57 -70.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206117958.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.830 kcal (2) G-P(sol) polarization free energy of solvation -73.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds