Wall clock time and date at job start Sat Apr 11 2020 05:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00276 * 2 1 4 4 H 1.48502 * 109.47066 * 270.00182 * 3 2 1 5 5 H 1.48495 * 109.47133 * 29.99624 * 3 2 1 6 6 H 1.48496 * 109.47361 * 150.00313 * 3 2 1 7 7 C 1.38812 * 119.99971 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00504 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99782 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99722 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46793 * 180.02562 * 10 9 7 12 12 C 1.53075 * 109.45369 * 64.78780 * 11 10 9 13 13 C 1.53196 * 109.29294 * 181.24302 * 12 11 10 14 14 N 1.46927 * 108.89121 * 305.57649 * 13 12 11 15 15 C 1.34780 * 120.62976 * 233.51701 * 14 13 12 16 16 O 1.21566 * 119.99853 * 174.96486 * 15 14 13 17 17 C 1.47773 * 120.00007 * 354.95884 * 15 14 13 18 18 C 1.39631 * 120.14476 * 311.83668 * 17 15 14 19 19 C 1.37904 * 119.91196 * 179.69475 * 18 17 15 20 20 C 1.38392 * 120.20833 * 0.58044 * 19 18 17 21 21 C 1.38468 * 120.29039 * 359.72023 * 20 19 18 22 22 F 1.35102 * 119.95591 * 180.02562 * 21 20 19 23 23 C 1.38381 * 120.08244 * 359.97374 * 21 20 19 24 24 Cl 1.73597 * 120.10405 * 180.02562 * 23 21 20 25 25 C 1.46928 * 118.73759 * 53.54118 * 14 13 12 26 26 C 1.53046 * 109.45722 * 185.00088 * 11 10 9 27 27 H 0.96999 * 119.99561 * 0.02562 * 1 2 3 28 28 H 0.96994 * 120.00325 * 0.02562 * 9 7 2 29 29 H 1.09000 * 109.47297 * 60.00266 * 10 9 7 30 30 H 1.09001 * 109.47236 * 299.99660 * 10 9 7 31 31 H 1.09000 * 109.44782 * 304.96269 * 11 10 9 32 32 H 1.09000 * 109.38691 * 61.36839 * 12 11 10 33 33 H 1.08997 * 109.62304 * 301.25708 * 12 11 10 34 34 H 1.09003 * 109.58293 * 185.72359 * 13 12 11 35 35 H 1.08998 * 109.58459 * 65.43541 * 13 12 11 36 36 H 1.07998 * 120.04450 * 359.97438 * 18 17 15 37 37 H 1.07998 * 119.89299 * 180.29644 * 19 18 17 38 38 H 1.07995 * 119.85283 * 179.69628 * 20 19 18 39 39 H 1.08995 * 109.58620 * 66.17944 * 25 14 13 40 40 H 1.09008 * 109.58477 * 186.45993 * 25 14 13 41 41 H 1.08992 * 109.49836 * 58.65881 * 26 11 10 42 42 H 1.09000 * 109.49724 * 298.56126 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6526 0.6999 6 1 3.5478 1.4401 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0637 -4.8197 -0.0012 12 6 0.2656 -4.8073 -1.3073 13 6 -0.7500 -5.9542 -1.2908 14 7 -0.0412 -7.2135 -1.0255 15 6 -0.1828 -8.2685 -1.8522 16 8 0.4782 -9.2732 -1.6742 17 6 -1.1416 -8.2041 -2.9748 18 6 -2.4461 -7.7558 -2.7580 19 6 -3.3350 -7.6917 -3.8103 20 6 -2.9419 -8.0817 -5.0786 21 6 -1.6522 -8.5335 -5.3021 22 9 -1.2755 -8.9120 -6.5431 23 6 -0.7485 -8.5968 -4.2561 24 17 0.8687 -9.1625 -4.5357 25 6 0.8244 -7.3010 0.1585 26 6 1.8249 -6.1414 0.1246 27 1 -0.4849 0.8401 -0.0004 28 1 0.3555 -2.3881 -0.0005 29 1 2.6846 -3.7146 0.8895 30 1 2.6846 -3.7146 -0.8905 31 1 0.3798 -4.7130 0.8409 32 1 0.9465 -4.9364 -2.1487 33 1 -0.2599 -3.8575 -1.4063 34 1 -1.2503 -6.0131 -2.2575 35 1 -1.4875 -5.7779 -0.5078 36 1 -2.7571 -7.4554 -1.7683 37 1 -4.3425 -7.3404 -3.6432 38 1 -3.6443 -8.0337 -5.8976 39 1 0.2170 -7.2334 1.0610 40 1 1.3611 -8.2498 0.1495 41 1 2.4096 -6.1384 1.0444 42 1 2.4909 -6.2604 -0.7300 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206386117.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:22 Heat of formation + Delta-G solvation = -47.335989 kcal Electronic energy + Delta-G solvation = -27060.843401 eV Core-core repulsion = 22981.411171 eV Total energy + Delta-G solvation = -4079.432231 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.34330 -40.81691 -38.93215 -37.64143 -36.79491 -34.99856 -33.07073 -31.95384 -31.10864 -30.59839 -30.30902 -26.90454 -24.82351 -23.56079 -23.44788 -22.94591 -21.77551 -20.50606 -19.52131 -18.15432 -17.24412 -17.11099 -17.02445 -16.50696 -16.11446 -15.88179 -15.21601 -14.85173 -14.77194 -14.32917 -14.07635 -13.95278 -13.77295 -13.58654 -13.38004 -13.09728 -12.86181 -12.65521 -12.41585 -12.27140 -12.16401 -11.87401 -11.78767 -11.27568 -11.17563 -11.01709 -10.85691 -10.43831 -10.38630 -10.32634 -10.05110 -9.98935 -9.66984 -9.41321 -9.13276 -8.88941 -8.71588 -6.93418 -5.79137 -3.06967 0.26736 0.49508 1.68242 2.36006 2.68472 3.06521 3.42187 3.47757 3.49009 3.62876 4.02763 4.29754 4.35588 4.57189 4.62354 4.79838 4.83690 4.99295 5.04773 5.11589 5.25262 5.30310 5.37275 5.43976 5.50063 5.53136 5.59744 5.68027 5.74760 5.90490 5.92315 6.05666 6.11807 6.16579 6.24842 6.37570 6.43995 6.58904 6.77920 6.89685 7.19984 7.68796 7.91770 8.40477 9.51772 10.09512 10.44355 11.43903 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.014618 B = 0.002709 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.986372 B =10331.945558 C =10991.935470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.069 0.931 9 N -0.732 5.732 10 C 0.158 3.842 11 C -0.094 4.094 12 C -0.125 4.125 13 C 0.098 3.902 14 N -0.597 5.597 15 C 0.559 3.441 16 O -0.520 6.520 17 C -0.089 4.089 18 C -0.088 4.088 19 C -0.090 4.090 20 C -0.124 4.124 21 C 0.104 3.896 22 F -0.123 7.123 23 C -0.035 4.035 24 Cl -0.024 7.024 25 C 0.114 3.886 26 C -0.126 4.126 27 H 0.255 0.745 28 H 0.383 0.617 29 H 0.019 0.981 30 H 0.018 0.982 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.147 0.853 37 H 0.148 0.852 38 H 0.150 0.850 39 H 0.070 0.930 40 H 0.092 0.908 41 H 0.077 0.923 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.196 -19.558 -7.226 22.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.369 4.369 8 H 0.087 0.913 9 N -0.376 5.376 10 C 0.030 3.970 11 C -0.113 4.113 12 C -0.163 4.163 13 C -0.024 4.024 14 N -0.330 5.330 15 C 0.345 3.655 16 O -0.397 6.397 17 C -0.093 4.093 18 C -0.106 4.106 19 C -0.108 4.108 20 C -0.143 4.143 21 C 0.084 3.916 22 F -0.102 7.102 23 C -0.064 4.064 24 Cl 0.005 6.995 25 C -0.008 4.008 26 C -0.165 4.165 27 H 0.064 0.936 28 H 0.217 0.783 29 H 0.037 0.963 30 H 0.036 0.964 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.109 0.891 34 H 0.103 0.897 35 H 0.093 0.907 36 H 0.165 0.835 37 H 0.166 0.834 38 H 0.167 0.833 39 H 0.089 0.911 40 H 0.110 0.890 41 H 0.095 0.905 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.519 -20.037 -7.175 22.572 hybrid contribution 0.334 1.017 -0.334 1.121 sum -7.184 -19.020 -7.509 21.674 Atomic orbital electron populations 1.69647 1.05074 1.25609 1.58023 1.24714 0.95530 0.97635 1.03103 0.86199 0.78682 0.83864 0.77523 1.21744 1.21780 1.20793 1.19239 0.91052 0.84231 1.42407 0.91274 1.42367 1.05787 0.99979 1.89482 1.20669 0.93167 0.85343 0.97793 1.21316 0.97862 0.94469 0.97621 1.21935 0.97977 0.98020 0.98370 1.22111 0.95235 0.83063 1.01998 1.48048 1.46664 1.12479 1.25842 1.17979 0.82197 0.83641 0.81646 1.90820 1.45378 1.31236 1.72247 1.19703 0.95731 1.01587 0.92324 1.21446 0.91304 0.97105 1.00780 1.21100 1.00527 0.97950 0.91205 1.21336 0.93974 0.99578 0.99399 1.17270 0.93138 1.01620 0.79563 1.91566 1.91672 1.88725 1.38214 1.20984 0.88931 1.03142 0.93367 1.98432 1.18049 1.86834 1.96192 1.21686 0.92481 1.00393 0.86213 1.21912 0.97752 0.93940 1.02889 0.93561 0.78296 0.96322 0.96421 0.90911 0.91736 0.89146 0.89720 0.90731 0.83541 0.83410 0.83259 0.91143 0.88995 0.90459 0.91471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.53 13.06 55.49 0.72 -26.81 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 4 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 7 C -0.24 -6.57 9.99 -15.06 -0.15 -6.72 16 8 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 9 N -0.73 -17.86 5.32 -59.90 -0.32 -18.18 16 10 C 0.16 3.06 5.65 -4.04 -0.02 3.04 16 11 C -0.09 -1.39 2.18 -90.56 -0.20 -1.59 16 12 C -0.12 -1.75 5.25 -26.59 -0.14 -1.89 16 13 C 0.10 1.07 5.23 -3.71 -0.02 1.05 16 14 N -0.60 -7.10 2.97 -173.90 -0.52 -7.62 16 15 C 0.56 7.35 6.77 -12.36 -0.08 7.26 16 16 O -0.52 -8.31 15.19 5.31 0.08 -8.23 16 17 C -0.09 -1.00 4.85 -104.95 -0.51 -1.51 16 18 C -0.09 -0.70 7.52 -39.18 -0.29 -0.99 16 19 C -0.09 -0.55 10.03 -39.65 -0.40 -0.95 16 20 C -0.12 -0.88 10.02 -39.44 -0.40 -1.28 16 21 C 0.10 1.05 7.27 -39.44 -0.29 0.77 16 22 F -0.12 -1.34 16.83 2.25 0.04 -1.30 16 23 C -0.04 -0.42 6.34 -39.00 -0.25 -0.67 16 24 Cl -0.02 -0.32 26.78 -51.86 -1.39 -1.71 16 25 C 0.11 1.31 6.44 -3.71 -0.02 1.29 16 26 C -0.13 -1.58 5.37 -26.61 -0.14 -1.72 16 27 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 28 H 0.38 9.64 6.84 -40.82 -0.28 9.36 16 29 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.09 1.45 7.15 -51.93 -0.37 1.08 16 34 H 0.08 0.83 5.08 -51.93 -0.26 0.56 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.15 0.91 7.28 -52.49 -0.38 0.53 16 37 H 0.15 0.47 8.06 -52.49 -0.42 0.04 16 38 H 0.15 0.68 8.06 -52.49 -0.42 0.26 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.09 1.11 7.00 -51.92 -0.36 0.75 16 41 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 360.19 15.07 5.43 5.43 Total: -1.00 -32.45 360.19 -9.42 -41.87 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -5.43 Total: 3.81 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: -3.01 Total: -4.40 kcal Atomic # 7 Polarization: -52.49 SS G_CDS: -0.11 Total: -52.60 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: 0.08 Total: -8.23 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -1.39 Total: -1.71 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.45 -9.42 -41.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206386117.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.469 kcal (2) G-P(sol) polarization free energy of solvation -32.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds