Wall clock time and date at job start Sat Apr 11 2020 05:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00276 * 2 1 4 4 H 1.48502 * 109.47066 * 270.00182 * 3 2 1 5 5 H 1.48495 * 109.47133 * 29.99624 * 3 2 1 6 6 H 1.48496 * 109.47361 * 150.00313 * 3 2 1 7 7 C 1.38812 * 119.99971 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00504 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99782 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99722 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46793 * 180.02562 * 10 9 7 12 12 C 1.53075 * 109.45369 * 64.78780 * 11 10 9 13 13 C 1.53196 * 109.29294 * 181.24302 * 12 11 10 14 14 N 1.46927 * 108.89121 * 305.57649 * 13 12 11 15 15 C 1.34780 * 120.62976 * 233.51701 * 14 13 12 16 16 O 1.21566 * 119.99853 * 174.96486 * 15 14 13 17 17 C 1.47773 * 120.00007 * 354.95884 * 15 14 13 18 18 C 1.39631 * 120.14476 * 311.83668 * 17 15 14 19 19 C 1.37904 * 119.91196 * 179.69475 * 18 17 15 20 20 C 1.38392 * 120.20833 * 0.58044 * 19 18 17 21 21 C 1.38468 * 120.29039 * 359.72023 * 20 19 18 22 22 F 1.35102 * 119.95591 * 180.02562 * 21 20 19 23 23 C 1.38381 * 120.08244 * 359.97374 * 21 20 19 24 24 Cl 1.73597 * 120.10405 * 180.02562 * 23 21 20 25 25 C 1.46928 * 118.73759 * 53.54118 * 14 13 12 26 26 C 1.53046 * 109.45722 * 185.00088 * 11 10 9 27 27 H 0.96999 * 119.99561 * 0.02562 * 1 2 3 28 28 H 0.96994 * 120.00325 * 0.02562 * 9 7 2 29 29 H 1.09000 * 109.47297 * 60.00266 * 10 9 7 30 30 H 1.09001 * 109.47236 * 299.99660 * 10 9 7 31 31 H 1.09000 * 109.44782 * 304.96269 * 11 10 9 32 32 H 1.09000 * 109.38691 * 61.36839 * 12 11 10 33 33 H 1.08997 * 109.62304 * 301.25708 * 12 11 10 34 34 H 1.09003 * 109.58293 * 185.72359 * 13 12 11 35 35 H 1.08998 * 109.58459 * 65.43541 * 13 12 11 36 36 H 1.07998 * 120.04450 * 359.97438 * 18 17 15 37 37 H 1.07998 * 119.89299 * 180.29644 * 19 18 17 38 38 H 1.07995 * 119.85283 * 179.69628 * 20 19 18 39 39 H 1.08995 * 109.58620 * 66.17944 * 25 14 13 40 40 H 1.09008 * 109.58477 * 186.45993 * 25 14 13 41 41 H 1.08992 * 109.49836 * 58.65881 * 26 11 10 42 42 H 1.09000 * 109.49724 * 298.56126 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6526 0.6999 6 1 3.5478 1.4401 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0637 -4.8197 -0.0012 12 6 0.2656 -4.8073 -1.3073 13 6 -0.7500 -5.9542 -1.2908 14 7 -0.0412 -7.2135 -1.0255 15 6 -0.1828 -8.2685 -1.8522 16 8 0.4782 -9.2732 -1.6742 17 6 -1.1416 -8.2041 -2.9748 18 6 -2.4461 -7.7558 -2.7580 19 6 -3.3350 -7.6917 -3.8103 20 6 -2.9419 -8.0817 -5.0786 21 6 -1.6522 -8.5335 -5.3021 22 9 -1.2755 -8.9120 -6.5431 23 6 -0.7485 -8.5968 -4.2561 24 17 0.8687 -9.1625 -4.5357 25 6 0.8244 -7.3010 0.1585 26 6 1.8249 -6.1414 0.1246 27 1 -0.4849 0.8401 -0.0004 28 1 0.3555 -2.3881 -0.0005 29 1 2.6846 -3.7146 0.8895 30 1 2.6846 -3.7146 -0.8905 31 1 0.3798 -4.7130 0.8409 32 1 0.9465 -4.9364 -2.1487 33 1 -0.2599 -3.8575 -1.4063 34 1 -1.2503 -6.0131 -2.2575 35 1 -1.4875 -5.7779 -0.5078 36 1 -2.7571 -7.4554 -1.7683 37 1 -4.3425 -7.3404 -3.6432 38 1 -3.6443 -8.0337 -5.8976 39 1 0.2170 -7.2334 1.0610 40 1 1.3611 -8.2498 0.1495 41 1 2.4096 -6.1384 1.0444 42 1 2.4909 -6.2604 -0.7300 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206386117.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:21 Heat of formation + Delta-G solvation = -66.232292 kcal Electronic energy + Delta-G solvation = -27061.662807 eV Core-core repulsion = 22981.411171 eV Total energy + Delta-G solvation = -4080.251636 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.10401 -41.71830 -39.76482 -38.74824 -37.67428 -36.56517 -34.56527 -33.02176 -32.00029 -31.86098 -31.39627 -28.31379 -26.05888 -24.84700 -24.49805 -23.73195 -23.09426 -21.65745 -20.52308 -19.25800 -18.88409 -17.93113 -17.82667 -17.39222 -16.89783 -16.78112 -16.66134 -16.15002 -15.69297 -15.41397 -15.40619 -15.31017 -14.96373 -14.72724 -14.31131 -14.24321 -13.97432 -13.88810 -13.53428 -13.26245 -13.10622 -12.95306 -12.81654 -12.74525 -12.61102 -12.23414 -12.18335 -12.10768 -11.95366 -11.67656 -11.50553 -11.32309 -11.00916 -10.90573 -10.14474 -9.84741 -9.70586 -8.96449 -7.93937 -5.21269 -0.42752 -0.17118 0.85563 1.45432 1.48633 1.49277 1.57691 1.83740 2.35008 2.57108 2.89854 3.26646 3.39583 3.66343 3.73149 3.76053 3.80261 3.90871 4.05553 4.09616 4.25271 4.31938 4.36694 4.42739 4.57767 4.60112 4.71345 4.78136 4.80389 4.85891 4.96616 5.00031 5.03475 5.08637 5.10893 5.16717 5.28420 5.48157 5.53038 5.54876 5.56748 6.24526 6.29497 6.95826 7.36513 8.12095 8.37493 9.29231 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.014618 B = 0.002709 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.986372 B =10331.945558 C =10991.935470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.070 4.070 3 Si 0.968 3.032 4 H -0.288 1.288 5 H -0.293 1.293 6 H -0.273 1.273 7 C -0.248 4.248 8 H 0.069 0.931 9 N -0.740 5.740 10 C 0.156 3.844 11 C -0.083 4.083 12 C -0.120 4.120 13 C 0.106 3.894 14 N -0.596 5.596 15 C 0.557 3.443 16 O -0.557 6.557 17 C -0.111 4.111 18 C -0.082 4.082 19 C -0.072 4.072 20 C -0.111 4.111 21 C 0.086 3.914 22 F -0.134 7.134 23 C -0.059 4.059 24 Cl -0.054 7.054 25 C 0.116 3.884 26 C -0.117 4.117 27 H 0.252 0.748 28 H 0.378 0.622 29 H 0.018 0.982 30 H 0.008 0.992 31 H 0.078 0.922 32 H 0.048 0.952 33 H 0.070 0.930 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.169 0.831 37 H 0.191 0.809 38 H 0.181 0.819 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.292 -19.433 -6.922 23.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.262 4.262 3 Si 0.798 3.202 4 H -0.216 1.216 5 H -0.219 1.219 6 H -0.198 1.198 7 C -0.380 4.380 8 H 0.087 0.913 9 N -0.384 5.384 10 C 0.030 3.970 11 C -0.101 4.101 12 C -0.158 4.158 13 C -0.015 4.015 14 N -0.328 5.328 15 C 0.345 3.655 16 O -0.436 6.436 17 C -0.115 4.115 18 C -0.100 4.100 19 C -0.090 4.090 20 C -0.129 4.129 21 C 0.066 3.934 22 F -0.112 7.112 23 C -0.087 4.087 24 Cl -0.025 7.025 25 C -0.006 4.006 26 C -0.156 4.156 27 H 0.061 0.939 28 H 0.211 0.789 29 H 0.036 0.964 30 H 0.026 0.974 31 H 0.096 0.904 32 H 0.067 0.933 33 H 0.089 0.911 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.187 0.813 37 H 0.208 0.792 38 H 0.198 0.802 39 H 0.111 0.889 40 H 0.103 0.897 41 H 0.108 0.892 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.596 -19.924 -6.870 23.157 hybrid contribution 0.959 0.973 -0.441 1.436 sum -8.636 -18.951 -7.311 22.072 Atomic orbital electron populations 1.69778 1.06286 1.26041 1.59351 1.25460 0.96417 1.00699 1.03667 0.85219 0.77746 0.79899 0.77371 1.21554 1.21939 1.19835 1.19590 0.91344 0.85635 1.41391 0.91310 1.42516 1.05713 1.00846 1.89288 1.20808 0.93968 0.85201 0.97034 1.21197 0.97061 0.93609 0.98274 1.21822 0.98236 0.98541 0.97246 1.22126 0.94410 0.81131 1.03870 1.48105 1.46511 1.12481 1.25662 1.18324 0.82077 0.83238 0.81875 1.90794 1.46995 1.32663 1.73190 1.19679 0.96826 1.03704 0.91278 1.21791 0.89932 0.95807 1.02493 1.21603 1.01792 0.95728 0.89873 1.21782 0.92801 0.97405 1.00946 1.17584 0.94182 1.02756 0.78872 1.91536 1.91951 1.89027 1.38726 1.21199 0.88119 1.04880 0.94544 1.98410 1.20371 1.87403 1.96336 1.21696 0.92533 0.99303 0.87024 1.21822 0.97735 0.93020 1.03005 0.93925 0.78936 0.96371 0.97371 0.90374 0.93350 0.91143 0.88226 0.88232 0.81332 0.79172 0.80209 0.88907 0.89658 0.89177 0.92795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.94 13.06 21.65 0.28 -56.66 16 2 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 3 Si 0.97 45.48 29.55 68.60 2.03 47.50 16 4 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 5 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 6 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 7 C -0.25 -13.69 9.99 84.03 0.84 -12.85 16 8 H 0.07 3.72 7.83 -2.91 -0.02 3.70 16 9 N -0.74 -36.32 5.32 -343.43 -1.83 -38.15 16 10 C 0.16 6.07 5.65 86.38 0.49 6.56 16 11 C -0.08 -2.38 2.18 -10.75 -0.02 -2.40 16 12 C -0.12 -3.30 5.25 30.68 0.16 -3.14 16 13 C 0.11 2.09 5.23 86.36 0.45 2.54 16 14 N -0.60 -13.31 2.97 -822.37 -2.45 -15.76 16 15 C 0.56 14.33 6.77 86.76 0.59 14.91 16 16 O -0.56 -18.09 15.19 -3.92 -0.06 -18.15 16 17 C -0.11 -2.34 4.85 -20.08 -0.10 -2.44 16 18 C -0.08 -1.02 7.52 22.53 0.17 -0.85 16 19 C -0.07 -0.56 10.03 22.23 0.22 -0.34 16 20 C -0.11 -1.20 10.02 22.36 0.22 -0.98 16 21 C 0.09 1.65 7.27 22.36 0.16 1.81 16 22 F -0.13 -2.88 16.83 44.97 0.76 -2.12 16 23 C -0.06 -1.39 6.34 22.65 0.14 -1.24 16 24 Cl -0.05 -1.51 26.78 -2.72 -0.07 -1.58 16 25 C 0.12 2.50 6.44 86.36 0.56 3.06 16 26 C -0.12 -2.82 5.37 30.67 0.16 -2.66 16 27 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 28 H 0.38 19.13 6.84 -92.71 -0.63 18.50 16 29 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.07 2.24 7.15 -2.39 -0.02 2.23 16 34 H 0.10 1.69 5.08 -2.39 -0.01 1.68 16 35 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.17 1.34 7.28 -2.91 -0.02 1.32 16 37 H 0.19 -0.05 8.06 -2.91 -0.02 -0.07 16 38 H 0.18 0.84 8.06 -2.91 -0.02 0.81 16 39 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.09 2.01 7.00 -2.38 -0.02 2.00 16 41 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -72.34 360.19 3.60 -68.73 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: 0.42 Total: 17.66 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: 4.52 Total: -1.47 kcal Atomic # 7 Polarization: -106.57 SS G_CDS: -3.99 Total: -110.56 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: -0.06 Total: -18.15 kcal Atomic # 9 Polarization: -2.88 SS G_CDS: 0.76 Total: -2.12 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.50 kcal Atomic # 17 Polarization: -1.51 SS G_CDS: -0.07 Total: -1.58 kcal Total: -72.34 3.60 -68.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206386117.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.502 kcal (2) G-P(sol) polarization free energy of solvation -72.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds