Wall clock time and date at job start Sat Apr 11 2020 05:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86798 * 119.99853 * 2 1 4 4 H 1.48506 * 109.46992 * 270.00059 * 3 2 1 5 5 H 1.48506 * 109.47237 * 29.99934 * 3 2 1 6 6 H 1.48492 * 109.47256 * 149.99893 * 3 2 1 7 7 C 1.38656 * 120.00050 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99721 * 180.02562 * 7 2 1 9 9 O 1.34826 * 119.99853 * 359.97438 * 7 2 1 10 10 C 1.35756 * 116.99717 * 185.06066 * 9 7 2 11 11 C 1.38879 * 120.06725 * 354.46384 * 10 9 7 12 12 C 1.38106 * 119.93042 * 180.02562 * 11 10 9 13 13 C 1.38305 * 120.06463 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.92734 * 179.97438 * 13 12 11 15 15 N 1.46509 * 109.46887 * 90.00081 * 14 13 12 16 16 N 1.28723 * 125.33917 * 89.97814 * 15 14 13 17 17 N 1.28990 * 108.94714 * 180.02562 * 16 15 14 18 18 C 1.34055 * 107.26267 * 359.97438 * 17 16 15 19 19 C 1.48443 * 126.67185 * 179.97438 * 18 17 16 20 20 C 1.39316 * 120.09592 * 0.02643 * 19 18 17 21 21 C 1.37981 * 119.91132 * 180.02562 * 20 19 18 22 22 C 1.38542 * 120.09138 * 0.02562 * 21 20 19 23 23 F 1.35103 * 119.91027 * 179.97438 * 22 21 20 24 24 C 1.38546 * 120.18238 * 0.23254 * 22 21 20 25 25 C 1.37979 * 120.09294 * 359.48856 * 24 22 21 26 26 N 1.28873 * 125.33900 * 270.29169 * 15 14 13 27 27 C 1.38299 * 120.14062 * 0.25104 * 13 12 11 28 28 C 1.38099 * 120.06889 * 359.45193 * 27 13 12 29 29 H 0.96993 * 120.00599 * 0.02562 * 1 2 3 30 30 H 1.07996 * 120.03669 * 0.02562 * 11 10 9 31 31 H 1.07995 * 119.96692 * 180.02562 * 12 11 10 32 32 H 1.08999 * 109.47262 * 330.00250 * 14 13 12 33 33 H 1.09001 * 109.47147 * 210.00156 * 14 13 12 34 34 H 1.08000 * 120.04181 * 0.03899 * 20 19 18 35 35 H 1.07995 * 119.95543 * 179.97438 * 21 20 19 36 36 H 1.08008 * 119.95231 * 179.72246 * 24 22 21 37 37 H 1.08006 * 120.04527 * 180.25697 * 25 24 22 38 38 H 1.07998 * 119.96495 * 179.70713 * 27 13 12 39 39 H 1.08004 * 120.03741 * 180.27211 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4970 2.0464 -1.4001 5 1 1.4469 2.6527 0.7000 6 1 3.5470 1.4403 0.7000 7 6 2.0089 -1.2008 -0.0005 8 1 3.0888 -1.2007 -0.0001 9 8 1.3347 -2.3684 -0.0005 10 6 2.0701 -3.5046 0.1056 11 6 3.4573 -3.4394 0.0922 12 6 4.2026 -4.5971 0.1998 13 6 3.5689 -5.8204 0.3204 14 6 4.3852 -7.0818 0.4371 15 7 4.6568 -7.3587 1.8499 16 7 3.9120 -8.0649 2.6268 17 7 4.4472 -8.1023 3.7998 18 6 5.5780 -7.3846 3.7442 19 6 6.5308 -7.1437 4.8568 20 6 6.2879 -7.6898 6.1152 21 6 7.1758 -7.4631 7.1467 22 6 8.3074 -6.6931 6.9326 23 9 9.1741 -6.4730 7.9453 24 6 8.5500 -6.1437 5.6840 25 6 7.6702 -6.3703 4.6456 26 7 5.6759 -6.9288 2.5112 27 6 2.1876 -5.8892 0.3283 28 6 1.4368 -4.7346 0.2272 29 1 -0.4851 0.8399 -0.0004 30 1 3.9527 -2.4844 -0.0023 31 1 5.2814 -4.5470 0.1899 32 1 5.3275 -6.9554 -0.0960 33 1 3.8313 -7.9145 0.0036 34 1 5.4058 -8.2901 6.2830 35 1 6.9879 -7.8857 8.1226 36 1 9.4311 -5.5402 5.5224 37 1 7.8622 -5.9451 3.6715 38 1 1.6957 -6.8464 0.4179 39 1 0.3581 -4.7885 0.2379 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001251713726.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:34 Heat of formation + Delta-G solvation = 107.231236 kcal Electronic energy + Delta-G solvation = -26849.042345 eV Core-core repulsion = 22675.205158 eV Total energy + Delta-G solvation = -4173.837187 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.108 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.20861 -44.19232 -39.35335 -39.20076 -37.15127 -34.91689 -33.43559 -32.54969 -31.56839 -31.25776 -30.43343 -29.72258 -26.78417 -25.38701 -24.46027 -23.72692 -22.47925 -22.19415 -21.72170 -20.81987 -18.21960 -18.17335 -17.67701 -17.44314 -17.00167 -16.55510 -16.22921 -15.88998 -15.00168 -14.80701 -14.62043 -14.57101 -13.96662 -13.88250 -13.86236 -13.72983 -13.44748 -13.24460 -12.96367 -12.90258 -12.77127 -12.31332 -11.97954 -11.74876 -11.53162 -11.46340 -11.40113 -11.03889 -10.90688 -10.86344 -10.82544 -10.56893 -10.43520 -9.55342 -9.47117 -9.03107 -8.71155 -8.42521 -7.52008 -6.64092 -4.22591 0.43653 0.90945 1.32381 1.60814 2.01807 2.27963 2.44196 3.02491 3.04055 3.08868 3.40084 3.62917 3.81747 3.91217 4.12683 4.34347 4.47963 4.53832 4.77508 4.82670 4.91983 4.92466 5.04795 5.13614 5.18798 5.25902 5.47684 5.58583 5.60754 5.62330 5.76659 5.77804 5.93712 5.99104 6.11726 6.17329 6.25049 6.43391 6.48394 6.64888 6.81488 6.97286 7.08976 7.22131 7.55730 7.80130 8.40497 8.80549 9.46073 10.52751 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.011043 B = 0.002461 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2534.857473 B =11374.172322 C =13160.742024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.042 3.958 3 Si 0.944 3.056 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.266 1.266 7 C -0.395 4.395 8 H 0.095 0.905 9 O -0.166 6.166 10 C 0.167 3.833 11 C -0.240 4.240 12 C -0.035 4.035 13 C -0.240 4.240 14 C 0.184 3.816 15 N -0.116 5.116 16 N -0.058 5.058 17 N -0.284 5.284 18 C 0.193 3.807 19 C -0.013 4.013 20 C -0.052 4.052 21 C -0.155 4.155 22 C 0.110 3.890 23 F -0.138 7.138 24 C -0.155 4.155 25 C -0.054 4.054 26 N -0.294 5.294 27 C -0.041 4.041 28 C -0.197 4.197 29 H 0.274 0.726 30 H 0.131 0.869 31 H 0.112 0.888 32 H 0.115 0.885 33 H 0.118 0.882 34 H 0.146 0.854 35 H 0.142 0.858 36 H 0.142 0.858 37 H 0.144 0.856 38 H 0.118 0.882 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.566 -13.687 6.693 21.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.164 4.164 3 Si 0.768 3.232 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.190 1.190 7 C -0.471 4.471 8 H 0.113 0.887 9 O -0.067 6.067 10 C 0.111 3.889 11 C -0.259 4.259 12 C -0.054 4.054 13 C -0.244 4.244 14 C 0.068 3.932 15 N -0.030 5.030 16 N -0.050 5.050 17 N -0.154 5.154 18 C -0.086 4.086 19 C -0.017 4.017 20 C -0.072 4.072 21 C -0.174 4.174 22 C 0.090 3.910 23 F -0.116 7.116 24 C -0.174 4.174 25 C -0.074 4.074 26 N -0.145 5.145 27 C -0.060 4.060 28 C -0.216 4.216 29 H 0.084 0.916 30 H 0.149 0.851 31 H 0.130 0.870 32 H 0.133 0.867 33 H 0.136 0.864 34 H 0.164 0.836 35 H 0.160 0.840 36 H 0.160 0.840 37 H 0.162 0.838 38 H 0.136 0.864 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 13.552 -13.693 6.296 20.267 hybrid contribution 0.950 1.188 0.321 1.555 sum 14.501 -12.504 6.616 20.259 Atomic orbital electron populations 1.70029 1.06086 1.28186 1.44435 1.25368 0.95900 0.99086 0.96050 0.85665 0.79001 0.79646 0.78908 1.19638 1.20033 1.19009 1.21409 0.91980 0.80590 1.53086 0.88724 1.83976 1.34701 1.11680 1.76349 1.19480 0.90352 0.88046 0.90987 1.21140 0.93738 0.98950 1.12071 1.20633 0.98555 0.91422 0.94811 1.18972 0.93608 0.92762 1.19011 1.21099 1.02218 0.98571 0.71359 1.50742 1.10822 1.28161 1.13227 1.78870 1.18368 1.11819 0.95931 1.75961 1.07142 1.19715 1.12625 1.23395 0.95323 0.98372 0.91532 1.17298 0.93219 1.01076 0.90061 1.21066 0.98814 0.96964 0.90355 1.21073 0.94143 1.01238 1.00938 1.17875 0.89188 0.98813 0.85147 1.91515 1.68296 1.93103 1.58733 1.21077 1.01961 1.02844 0.91501 1.21079 0.91664 0.95110 0.99558 1.74814 1.12047 1.21904 1.05743 1.20545 0.92425 0.97298 0.95736 1.20210 0.99870 0.90082 1.11432 0.91645 0.85144 0.86996 0.86707 0.86430 0.83628 0.83995 0.84020 0.83831 0.86442 0.86022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.13 13.67 55.48 0.76 -23.37 16 2 C 0.04 1.10 5.49 -17.51 -0.10 1.01 16 3 Si 0.94 19.66 29.55 -169.99 -5.02 14.64 16 4 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 5 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 6 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 7 C -0.39 -10.55 9.49 30.89 0.29 -10.26 16 8 H 0.10 2.32 5.20 -52.49 -0.27 2.05 16 9 O -0.17 -4.52 9.76 0.04 0.00 -4.52 16 10 C 0.17 3.82 6.65 -39.11 -0.26 3.56 16 11 C -0.24 -4.86 9.17 -39.39 -0.36 -5.22 16 12 C -0.04 -0.59 9.69 -39.61 -0.38 -0.97 16 13 C -0.24 -3.65 5.47 -104.57 -0.57 -4.22 16 14 C 0.18 2.12 6.72 -5.19 -0.03 2.09 16 15 N -0.12 -1.64 3.98 -11.67 -0.05 -1.69 16 16 N -0.06 -0.89 13.23 60.35 0.80 -0.09 16 17 N -0.28 -4.38 12.23 32.15 0.39 -3.99 16 18 C 0.19 2.75 7.93 -156.30 -1.24 1.51 16 19 C -0.01 -0.15 5.88 -104.89 -0.62 -0.77 16 20 C -0.05 -0.51 9.70 -39.27 -0.38 -0.89 16 21 C -0.16 -1.34 10.01 -39.56 -0.40 -1.74 16 22 C 0.11 1.02 7.30 -39.36 -0.29 0.74 16 23 F -0.14 -1.35 17.26 2.25 0.04 -1.31 16 24 C -0.16 -1.37 10.01 -39.56 -0.40 -1.76 16 25 C -0.05 -0.54 9.70 -39.28 -0.38 -0.92 16 26 N -0.29 -4.24 11.85 32.17 0.38 -3.86 16 27 C -0.04 -0.67 9.69 -39.61 -0.38 -1.05 16 28 C -0.20 -3.90 9.99 -39.39 -0.39 -4.29 16 29 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.13 2.65 5.64 -52.49 -0.30 2.36 16 31 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 32 H 0.11 1.05 8.08 -51.93 -0.42 0.63 16 33 H 0.12 1.05 8.08 -51.93 -0.42 0.63 16 34 H 0.15 1.34 7.88 -52.49 -0.41 0.92 16 35 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 36 H 0.14 0.96 8.06 -52.48 -0.42 0.53 16 37 H 0.14 1.34 7.88 -52.48 -0.41 0.92 16 38 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 39 H 0.12 2.34 8.06 -52.48 -0.42 1.92 16 LS Contribution 357.12 15.07 5.38 5.38 Total: -1.00 -31.06 357.12 -6.69 -37.75 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -3.49 Total: 4.26 kcal Atomic # 6 Polarization: -17.31 SS G_CDS: -5.89 Total: -23.20 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: 2.29 Total: -33.00 kcal Atomic # 8 Polarization: -4.52 SS G_CDS: 0.00 Total: -4.52 kcal Atomic # 9 Polarization: -1.35 SS G_CDS: 0.04 Total: -1.31 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.64 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.06 -6.69 -37.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001251713726.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.979 kcal (2) G-P(sol) polarization free energy of solvation -31.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds