Wall clock time and date at job start Sat Apr 11 2020 05:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86798 * 119.99853 * 2 1 4 4 H 1.48506 * 109.46992 * 270.00059 * 3 2 1 5 5 H 1.48506 * 109.47237 * 29.99934 * 3 2 1 6 6 H 1.48492 * 109.47256 * 149.99893 * 3 2 1 7 7 C 1.38656 * 120.00050 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99721 * 180.02562 * 7 2 1 9 9 O 1.34826 * 119.99853 * 359.97438 * 7 2 1 10 10 C 1.35756 * 116.99717 * 185.06066 * 9 7 2 11 11 C 1.38879 * 120.06725 * 354.46384 * 10 9 7 12 12 C 1.38106 * 119.93042 * 180.02562 * 11 10 9 13 13 C 1.38305 * 120.06463 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.92734 * 179.97438 * 13 12 11 15 15 N 1.46509 * 109.46887 * 90.00081 * 14 13 12 16 16 N 1.28723 * 125.33917 * 89.97814 * 15 14 13 17 17 N 1.28990 * 108.94714 * 180.02562 * 16 15 14 18 18 C 1.34055 * 107.26267 * 359.97438 * 17 16 15 19 19 C 1.48443 * 126.67185 * 179.97438 * 18 17 16 20 20 C 1.39316 * 120.09592 * 0.02643 * 19 18 17 21 21 C 1.37981 * 119.91132 * 180.02562 * 20 19 18 22 22 C 1.38542 * 120.09138 * 0.02562 * 21 20 19 23 23 F 1.35103 * 119.91027 * 179.97438 * 22 21 20 24 24 C 1.38546 * 120.18238 * 0.23254 * 22 21 20 25 25 C 1.37979 * 120.09294 * 359.48856 * 24 22 21 26 26 N 1.28873 * 125.33900 * 270.29169 * 15 14 13 27 27 C 1.38299 * 120.14062 * 0.25104 * 13 12 11 28 28 C 1.38099 * 120.06889 * 359.45193 * 27 13 12 29 29 H 0.96993 * 120.00599 * 0.02562 * 1 2 3 30 30 H 1.07996 * 120.03669 * 0.02562 * 11 10 9 31 31 H 1.07995 * 119.96692 * 180.02562 * 12 11 10 32 32 H 1.08999 * 109.47262 * 330.00250 * 14 13 12 33 33 H 1.09001 * 109.47147 * 210.00156 * 14 13 12 34 34 H 1.08000 * 120.04181 * 0.03899 * 20 19 18 35 35 H 1.07995 * 119.95543 * 179.97438 * 21 20 19 36 36 H 1.08008 * 119.95231 * 179.72246 * 24 22 21 37 37 H 1.08006 * 120.04527 * 180.25697 * 25 24 22 38 38 H 1.07998 * 119.96495 * 179.70713 * 27 13 12 39 39 H 1.08004 * 120.03741 * 180.27211 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4970 2.0464 -1.4001 5 1 1.4469 2.6527 0.7000 6 1 3.5470 1.4403 0.7000 7 6 2.0089 -1.2008 -0.0005 8 1 3.0888 -1.2007 -0.0001 9 8 1.3347 -2.3684 -0.0005 10 6 2.0701 -3.5046 0.1056 11 6 3.4573 -3.4394 0.0922 12 6 4.2026 -4.5971 0.1998 13 6 3.5689 -5.8204 0.3204 14 6 4.3852 -7.0818 0.4371 15 7 4.6568 -7.3587 1.8499 16 7 3.9120 -8.0649 2.6268 17 7 4.4472 -8.1023 3.7998 18 6 5.5780 -7.3846 3.7442 19 6 6.5308 -7.1437 4.8568 20 6 6.2879 -7.6898 6.1152 21 6 7.1758 -7.4631 7.1467 22 6 8.3074 -6.6931 6.9326 23 9 9.1741 -6.4730 7.9453 24 6 8.5500 -6.1437 5.6840 25 6 7.6702 -6.3703 4.6456 26 7 5.6759 -6.9288 2.5112 27 6 2.1876 -5.8892 0.3283 28 6 1.4368 -4.7346 0.2272 29 1 -0.4851 0.8399 -0.0004 30 1 3.9527 -2.4844 -0.0023 31 1 5.2814 -4.5470 0.1899 32 1 5.3275 -6.9554 -0.0960 33 1 3.8313 -7.9145 0.0036 34 1 5.4058 -8.2901 6.2830 35 1 6.9879 -7.8857 8.1226 36 1 9.4311 -5.5402 5.5224 37 1 7.8622 -5.9451 3.6715 38 1 1.6957 -6.8464 0.4179 39 1 0.3581 -4.7885 0.2379 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001251713726.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:33 Heat of formation + Delta-G solvation = 89.540271 kcal Electronic energy + Delta-G solvation = -26849.809483 eV Core-core repulsion = 22675.205158 eV Total energy + Delta-G solvation = -4174.604324 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.108 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.95104 -45.28255 -40.92332 -39.99458 -38.70493 -36.11224 -34.48926 -34.36910 -32.52973 -32.17769 -31.92715 -30.80917 -28.19141 -27.10350 -25.42131 -24.66110 -23.76049 -23.42218 -22.63904 -22.20795 -19.96376 -19.13643 -18.90947 -18.52693 -18.30560 -17.44513 -17.07443 -16.63061 -16.52077 -16.40032 -16.02734 -15.63057 -15.40016 -15.25534 -14.93822 -14.65164 -14.56844 -14.39427 -14.21340 -13.92703 -13.73327 -13.63491 -13.27647 -13.14848 -12.91396 -12.78385 -12.57541 -12.40787 -12.21971 -12.16431 -11.98255 -11.88649 -11.50860 -11.27899 -10.87463 -10.17234 -9.90443 -9.54658 -9.16372 -8.54104 -6.22987 -0.39938 0.14046 0.20747 0.36954 0.50233 1.23562 1.29598 1.33167 1.43649 1.50628 2.12995 2.60898 2.65654 2.77525 3.08605 3.16931 3.19351 3.39231 3.65773 3.72922 3.86696 3.88585 4.05936 4.13615 4.21465 4.30685 4.33945 4.42444 4.48652 4.61386 4.73860 4.86834 4.92173 4.92686 5.05832 5.06217 5.11549 5.15880 5.24134 5.36273 5.41938 5.56978 5.60568 5.76959 5.94741 6.05367 6.90222 7.29791 7.66983 8.68410 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.011043 B = 0.002461 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2534.857473 B =11374.172322 C =13160.742024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.020 4.020 3 Si 1.018 2.982 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.253 1.253 7 C -0.417 4.417 8 H 0.105 0.895 9 O -0.225 6.225 10 C 0.130 3.870 11 C -0.250 4.250 12 C -0.032 4.032 13 C -0.209 4.209 14 C 0.180 3.820 15 N -0.116 5.116 16 N -0.070 5.070 17 N -0.302 5.302 18 C 0.194 3.806 19 C -0.037 4.037 20 C -0.054 4.054 21 C -0.150 4.150 22 C 0.105 3.895 23 F -0.140 7.140 24 C -0.151 4.151 25 C -0.055 4.055 26 N -0.301 5.301 27 C -0.034 4.034 28 C -0.212 4.212 29 H 0.275 0.725 30 H 0.123 0.877 31 H 0.147 0.853 32 H 0.150 0.850 33 H 0.153 0.847 34 H 0.149 0.851 35 H 0.164 0.836 36 H 0.163 0.837 37 H 0.150 0.850 38 H 0.154 0.846 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.819 -15.672 7.233 24.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.218 4.218 3 Si 0.837 3.163 4 H -0.185 1.185 5 H -0.197 1.197 6 H -0.176 1.176 7 C -0.492 4.492 8 H 0.122 0.878 9 O -0.130 6.130 10 C 0.078 3.922 11 C -0.269 4.269 12 C -0.051 4.051 13 C -0.212 4.212 14 C 0.064 3.936 15 N -0.029 5.029 16 N -0.063 5.063 17 N -0.172 5.172 18 C -0.086 4.086 19 C -0.041 4.041 20 C -0.074 4.074 21 C -0.168 4.168 22 C 0.085 3.915 23 F -0.119 7.119 24 C -0.170 4.170 25 C -0.075 4.075 26 N -0.152 5.152 27 C -0.052 4.052 28 C -0.231 4.231 29 H 0.084 0.916 30 H 0.140 0.860 31 H 0.164 0.836 32 H 0.168 0.832 33 H 0.171 0.829 34 H 0.167 0.833 35 H 0.182 0.818 36 H 0.181 0.819 37 H 0.167 0.833 38 H 0.171 0.829 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 16.843 -15.744 6.837 24.048 hybrid contribution 0.153 1.348 0.250 1.380 sum 16.996 -14.396 7.088 23.374 Atomic orbital electron populations 1.70171 1.08086 1.29071 1.48064 1.26621 0.96835 1.02836 0.95535 0.84591 0.77827 0.74430 0.79431 1.18502 1.19656 1.17618 1.21860 0.92635 0.81233 1.53500 0.87787 1.83952 1.36179 1.12745 1.80140 1.20059 0.91747 0.87982 0.92406 1.21261 0.92967 1.00250 1.12413 1.21020 1.00166 0.90587 0.93312 1.19436 0.93553 0.94092 1.14110 1.21468 1.03955 0.97549 0.70651 1.50769 1.10648 1.27920 1.13606 1.78826 1.18749 1.12452 0.96227 1.75942 1.07874 1.20570 1.12834 1.23841 0.95167 0.97500 0.92047 1.17486 0.93748 1.02769 0.90085 1.21145 0.99211 0.96913 0.90138 1.21280 0.93421 1.00572 1.01559 1.18056 0.89299 0.98879 0.85296 1.91515 1.68387 1.93118 1.58863 1.21287 1.02283 1.02476 0.90915 1.21158 0.91319 0.94828 1.00178 1.74810 1.12250 1.22207 1.05934 1.20979 0.93093 0.97410 0.93765 1.20473 1.00265 0.90465 1.11913 0.91636 0.85964 0.83554 0.83229 0.82889 0.83310 0.81805 0.81910 0.83260 0.82860 0.86570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.21 13.67 21.61 0.30 -54.92 16 2 C -0.02 -1.11 5.49 84.83 0.47 -0.64 16 3 Si 1.02 41.66 29.55 68.60 2.03 43.69 16 4 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 5 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 6 H -0.25 -9.59 7.11 99.48 0.71 -8.89 16 7 C -0.42 -23.56 9.49 67.92 0.64 -22.91 16 8 H 0.10 5.36 5.20 -2.91 -0.02 5.34 16 9 O -0.22 -13.14 9.76 -22.77 -0.22 -13.36 16 10 C 0.13 6.17 6.65 22.58 0.15 6.32 16 11 C -0.25 -10.15 9.17 22.39 0.21 -9.95 16 12 C -0.03 -0.99 9.69 22.25 0.22 -0.77 16 13 C -0.21 -5.57 5.47 -19.83 -0.11 -5.68 16 14 C 0.18 3.21 6.72 85.63 0.58 3.79 16 15 N -0.12 -2.83 3.98 -190.83 -0.76 -3.59 16 16 N -0.07 -1.97 13.23 37.02 0.49 -1.48 16 17 N -0.30 -8.73 12.23 -52.19 -0.64 -9.37 16 18 C 0.19 5.10 7.93 137.37 1.09 6.19 16 19 C -0.04 -0.80 5.88 -20.04 -0.12 -0.92 16 20 C -0.05 -0.97 9.70 22.47 0.22 -0.75 16 21 C -0.15 -2.24 10.01 22.28 0.22 -2.02 16 22 C 0.10 1.70 7.30 22.42 0.16 1.86 16 23 F -0.14 -2.42 17.26 44.97 0.78 -1.64 16 24 C -0.15 -2.27 10.01 22.28 0.22 -2.05 16 25 C -0.05 -0.97 9.70 22.47 0.22 -0.75 16 26 N -0.30 -7.74 11.85 -52.14 -0.62 -8.36 16 27 C -0.03 -1.02 9.69 22.25 0.22 -0.81 16 28 C -0.21 -8.52 9.99 22.39 0.22 -8.29 16 29 H 0.27 15.13 8.31 -92.71 -0.77 14.35 16 30 H 0.12 5.09 5.64 -2.91 -0.02 5.07 16 31 H 0.15 3.50 8.06 -2.91 -0.02 3.47 16 32 H 0.15 1.78 8.08 -2.39 -0.02 1.76 16 33 H 0.15 1.78 8.08 -2.39 -0.02 1.77 16 34 H 0.15 2.52 7.88 -2.91 -0.02 2.49 16 35 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 36 H 0.16 1.69 8.06 -2.91 -0.02 1.67 16 37 H 0.15 2.41 7.88 -2.91 -0.02 2.39 16 38 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 39 H 0.12 4.68 8.06 -2.91 -0.02 4.65 16 Total: -1.00 -73.63 357.12 7.07 -66.56 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: 1.12 Total: 19.84 kcal Atomic # 6 Polarization: -41.98 SS G_CDS: 4.61 Total: -37.38 kcal Atomic # 7 Polarization: -76.48 SS G_CDS: -1.23 Total: -77.71 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: -0.22 Total: -13.36 kcal Atomic # 9 Polarization: -2.42 SS G_CDS: 0.78 Total: -1.64 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Total: -73.63 7.07 -66.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001251713726.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.101 kcal (2) G-P(sol) polarization free energy of solvation -73.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds