Wall clock time and date at job start Sat Apr 11 2020 05:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31288 * 1 3 3 Si 1.86801 * 119.99872 * 2 1 4 4 H 1.48499 * 109.46867 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.46935 * 300.00100 * 3 2 1 6 6 H 1.48499 * 109.46788 * 59.99906 * 3 2 1 7 7 C 1.39010 * 119.99809 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99300 * 179.97438 * 7 2 1 9 9 N 1.37292 * 120.00383 * 359.97438 * 7 2 1 10 10 C 1.36432 * 126.05587 * 179.97438 * 9 7 2 11 11 C 1.35791 * 107.50196 * 179.97438 * 10 9 7 12 12 N 1.40292 * 126.10514 * 179.97438 * 11 10 9 13 13 C 1.34769 * 120.00038 * 180.02562 * 12 11 10 14 14 O 1.21403 * 120.00252 * 359.97438 * 13 12 11 15 15 C 1.49310 * 120.00238 * 180.02562 * 13 12 11 16 16 O 1.21373 * 119.99490 * 359.97438 * 15 13 12 17 17 N 1.34773 * 120.00416 * 180.27495 * 15 13 12 18 18 N 1.40101 * 120.00244 * 179.72637 * 17 15 13 19 19 C 1.36033 * 126.34477 * 0.02562 * 18 17 15 20 20 N 1.30112 * 110.09572 * 179.97438 * 19 18 17 21 21 C 1.35780 * 109.64811 * 0.02562 * 20 19 18 22 22 C 1.39740 * 133.60484 * 180.02562 * 21 20 19 23 23 C 1.36598 * 119.88631 * 179.97438 * 22 21 20 24 24 C 1.38779 * 120.67328 * 359.97438 * 23 22 21 25 25 C 1.37859 * 120.44678 * 359.97438 * 24 23 22 26 26 C 1.38050 * 126.35096 * 179.71182 * 18 17 15 27 27 C 1.40726 * 107.79523 * 0.24338 * 11 10 9 28 28 N 1.30883 * 108.37372 * 359.58666 * 27 11 10 29 29 H 0.96992 * 119.99837 * 359.97438 * 1 2 3 30 30 H 1.08003 * 126.25632 * 0.02562 * 10 9 7 31 31 H 0.97001 * 119.99609 * 359.97438 * 12 11 10 32 32 H 0.97001 * 120.00114 * 359.71509 * 17 15 13 33 33 H 1.07996 * 124.95593 * 0.02562 * 19 18 17 34 34 H 1.08002 * 120.05181 * 359.93288 * 22 21 20 35 35 H 1.08004 * 119.66524 * 180.02562 * 23 22 21 36 36 H 1.07995 * 119.77802 * 180.02562 * 24 23 22 37 37 H 1.07996 * 120.15255 * 180.02562 * 25 24 23 38 38 H 1.07997 * 125.81146 * 179.76120 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2468 1.6178 0.0000 4 1 3.7068 1.3464 -0.0006 5 1 1.8881 2.3964 -1.2124 6 1 1.8880 2.3964 1.2125 7 6 2.0079 -1.2039 -0.0005 8 1 3.0879 -1.2038 -0.0010 9 7 1.3215 -2.3929 -0.0005 10 6 1.8752 -3.6398 -0.0015 11 6 0.8574 -4.5386 -0.0006 12 7 0.9880 -5.9355 -0.0016 13 6 -0.1113 -6.7151 -0.0010 14 8 -1.2146 -6.2086 0.0010 15 6 0.0277 -8.2017 -0.0015 16 8 1.1308 -8.7080 -0.0029 17 7 -1.0716 -8.9813 -0.0064 18 7 -0.9412 -10.3763 -0.0127 19 6 0.2249 -11.0769 -0.0140 20 7 -0.0213 -12.3545 -0.0198 21 6 -1.3633 -12.5609 -0.0233 22 6 -2.1621 -13.7075 -0.0291 23 6 -3.5229 -13.5890 -0.0308 24 6 -4.1247 -12.3384 -0.0262 25 6 -3.3567 -11.1936 -0.0194 26 6 -1.9720 -11.2945 -0.0127 27 6 -0.3519 -3.8190 -0.0046 28 7 -0.0713 -2.5406 0.0011 29 1 -0.4849 0.8400 0.0004 30 1 2.9304 -3.8701 -0.0021 31 1 1.8696 -6.3401 -0.0035 32 1 -1.9532 -8.5767 -0.0055 33 1 1.2111 -10.6369 -0.0099 34 1 -1.7042 -14.6856 -0.0330 35 1 -4.1369 -14.4775 -0.0349 36 1 -5.2019 -12.2616 -0.0272 37 1 -3.8299 -10.2229 -0.0154 38 1 -1.3428 -4.2484 -0.0086 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255532218.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:35 Heat of formation + Delta-G solvation = 125.794982 kcal Electronic energy + Delta-G solvation = -27152.844947 eV Core-core repulsion = 22999.732707 eV Total energy + Delta-G solvation = -4153.112241 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.107 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.52260 -42.14231 -41.28173 -39.73682 -38.30206 -36.94606 -36.02062 -35.05265 -32.94435 -32.32297 -30.80111 -30.44517 -29.90104 -27.35001 -25.97702 -24.50708 -23.49617 -23.30063 -22.79382 -21.47866 -21.25548 -20.31089 -19.36873 -19.12117 -18.10523 -17.67551 -17.52548 -17.44857 -16.91257 -16.72616 -16.59678 -15.95473 -15.68559 -15.56718 -15.36009 -14.97591 -14.90763 -14.90490 -14.81137 -13.53604 -13.42743 -13.30450 -13.01230 -12.96109 -12.95134 -12.64566 -12.63422 -12.50254 -12.08041 -12.03391 -11.20420 -11.12224 -10.94652 -10.94316 -10.85487 -10.16875 -9.48610 -9.12244 -8.68115 -8.50716 -6.28646 -0.29075 -0.23889 -0.01496 0.45507 1.24639 1.40733 1.56664 1.58955 1.65277 1.68224 1.87969 2.12155 2.43084 2.53692 2.74863 2.81419 3.06447 3.18619 3.27918 3.65904 3.96766 4.08205 4.19096 4.36540 4.38287 4.42961 4.48871 4.75870 4.88503 4.95837 4.97100 5.10436 5.26208 5.29505 5.35458 5.51642 5.53072 5.70651 5.87249 5.90096 6.15479 6.31191 6.45606 6.64037 6.67073 6.88839 7.38588 7.60489 8.48404 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.039085 B = 0.001893 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.215804 B =14788.368516 C =15494.711849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C -0.004 4.004 3 Si 1.018 2.982 4 H -0.241 1.241 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.351 4.351 8 H 0.143 0.857 9 N -0.163 5.163 10 C -0.068 4.068 11 C -0.060 4.060 12 N -0.567 5.567 13 C 0.509 3.491 14 O -0.532 6.532 15 C 0.535 3.465 16 O -0.511 6.511 17 N -0.480 5.480 18 N -0.299 5.299 19 C 0.268 3.732 20 N -0.508 5.508 21 C 0.025 3.975 22 C -0.076 4.076 23 C -0.114 4.114 24 C -0.090 4.090 25 C -0.121 4.121 26 C 0.020 3.980 27 C -0.043 4.043 28 N -0.309 5.309 29 H 0.278 0.722 30 H 0.191 0.809 31 H 0.428 0.572 32 H 0.452 0.548 33 H 0.242 0.758 34 H 0.144 0.856 35 H 0.166 0.834 36 H 0.167 0.833 37 H 0.141 0.859 38 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.864 -20.788 -0.046 21.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.217 4.217 3 Si 0.837 3.163 4 H -0.164 1.164 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.482 4.482 8 H 0.160 0.840 9 N 0.070 4.930 10 C -0.220 4.220 11 C -0.166 4.166 12 N -0.212 5.212 13 C 0.288 3.712 14 O -0.410 6.410 15 C 0.316 3.684 16 O -0.385 6.385 17 N -0.230 5.230 18 N -0.078 5.078 19 C -0.016 4.016 20 N -0.230 5.230 21 C -0.093 4.093 22 C -0.096 4.096 23 C -0.134 4.134 24 C -0.109 4.109 25 C -0.142 4.142 26 C -0.087 4.087 27 C -0.219 4.219 28 N -0.140 5.140 29 H 0.088 0.912 30 H 0.207 0.793 31 H 0.266 0.734 32 H 0.299 0.701 33 H 0.257 0.743 34 H 0.162 0.838 35 H 0.184 0.816 36 H 0.184 0.816 37 H 0.159 0.841 38 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -3.941 -19.953 -0.046 20.338 hybrid contribution 0.095 0.720 0.009 0.726 sum -3.845 -19.233 -0.036 19.613 Atomic orbital electron populations 1.70367 1.08335 1.29238 1.36783 1.26855 0.96486 1.04268 0.94057 0.84547 0.79106 0.74480 0.78194 1.16393 1.19819 1.19809 1.20699 0.93074 0.80745 1.53726 0.83976 1.44856 1.03765 1.04811 1.39599 1.22027 0.98954 0.84043 1.16934 1.17184 0.93513 0.81937 1.23974 1.41862 1.09474 1.03006 1.66853 1.19078 0.85133 0.85707 0.81286 1.90714 1.26042 1.74193 1.50036 1.20128 0.83558 0.87476 0.77263 1.90671 1.25457 1.74159 1.48193 1.44624 1.12107 0.91901 1.74370 1.44545 1.07913 0.93912 1.61445 1.26634 0.91611 0.85650 0.97740 1.70623 1.14875 1.13799 1.23656 1.19342 0.89665 0.93259 1.07074 1.20364 0.93368 0.96085 0.99737 1.21153 0.93483 0.99269 0.99469 1.21403 1.01391 0.90743 0.97398 1.20373 0.87868 1.01589 1.04341 1.19187 0.91359 0.88347 1.09832 1.24309 0.98995 0.90750 1.07848 1.78194 0.91855 1.16556 1.27384 0.91224 0.79254 0.73354 0.70124 0.74256 0.83788 0.81623 0.81589 0.84120 0.80428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.17 11.81 21.67 0.26 -44.91 16 2 C 0.00 -0.22 5.50 84.96 0.47 0.25 16 3 Si 1.02 36.87 29.55 68.60 2.03 38.89 16 4 H -0.24 -7.82 7.11 99.48 0.71 -7.12 16 5 H -0.27 -9.78 7.11 99.48 0.71 -9.07 16 6 H -0.27 -9.77 7.11 99.48 0.71 -9.07 16 7 C -0.35 -17.64 10.25 84.02 0.86 -16.78 16 8 H 0.14 6.17 7.83 -2.91 -0.02 6.15 16 9 N -0.16 -8.50 3.73 -189.98 -0.71 -9.21 16 10 C -0.07 -2.93 11.49 83.41 0.96 -1.97 16 11 C -0.06 -2.51 6.90 37.83 0.26 -2.24 16 12 N -0.57 -18.02 5.45 -305.33 -1.66 -19.68 16 13 C 0.51 15.44 7.85 87.23 0.69 16.12 16 14 O -0.53 -18.70 13.62 -3.41 -0.05 -18.74 16 15 C 0.53 13.41 7.96 87.23 0.69 14.11 16 16 O -0.51 -13.21 13.61 -3.32 -0.05 -13.25 16 17 N -0.48 -10.73 6.48 -174.60 -1.13 -11.86 16 18 N -0.30 -7.23 3.93 -191.13 -0.75 -7.98 16 19 C 0.27 6.87 11.47 180.06 2.07 8.94 16 20 N -0.51 -13.91 11.27 -192.04 -2.16 -16.08 16 21 C 0.03 0.61 7.23 39.45 0.29 0.89 16 22 C -0.08 -1.33 10.05 22.25 0.22 -1.10 16 23 C -0.11 -1.33 9.96 22.02 0.22 -1.11 16 24 C -0.09 -1.05 10.03 22.31 0.22 -0.83 16 25 C -0.12 -1.99 10.07 22.32 0.22 -1.76 16 26 C 0.02 0.45 7.12 38.86 0.28 0.73 16 27 C -0.04 -2.14 10.85 85.44 0.93 -1.21 16 28 N -0.31 -17.39 10.39 -56.43 -0.59 -17.98 16 29 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 30 H 0.19 6.35 8.06 -2.91 -0.02 6.33 16 31 H 0.43 10.87 8.29 -92.71 -0.77 10.10 16 32 H 0.45 8.59 8.30 -213.32 -1.77 6.82 16 33 H 0.24 5.66 5.75 -2.91 -0.02 5.65 16 34 H 0.14 2.05 8.06 -2.91 -0.02 2.02 16 35 H 0.17 0.78 8.06 -2.91 -0.02 0.75 16 36 H 0.17 0.83 8.06 -2.91 -0.02 0.80 16 37 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 38 H 0.18 8.50 5.92 -2.91 -0.02 8.48 16 Total: -1.00 -72.11 342.59 2.20 -69.91 By element: Atomic # 1 Polarization: 38.23 SS G_CDS: -1.36 Total: 36.87 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: 8.37 Total: 14.03 kcal Atomic # 7 Polarization: -120.95 SS G_CDS: -6.75 Total: -127.71 kcal Atomic # 8 Polarization: -31.91 SS G_CDS: -0.09 Total: -32.00 kcal Atomic # 14 Polarization: 36.87 SS G_CDS: 2.03 Total: 38.89 kcal Total: -72.11 2.20 -69.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255532218.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.707 kcal (2) G-P(sol) polarization free energy of solvation -72.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds