Wall clock time and date at job start Sat Apr 11 2020 05:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 120.00171 * 2 1 4 4 H 1.48503 * 109.47304 * 239.99859 * 3 2 1 5 5 H 1.48501 * 109.47192 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47135 * 119.99991 * 3 2 1 7 7 C 1.38821 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.07987 * 120.00082 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99659 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00135 * 180.02562 * 9 7 2 11 11 H 1.09002 * 112.84567 * 336.19350 * 10 9 7 12 12 C 1.53782 * 113.61704 * 107.49852 * 10 9 7 13 13 C 1.53785 * 87.07795 * 89.11803 * 12 10 9 14 14 H 1.08997 * 113.69356 * 270.87256 * 13 12 10 15 15 C 1.53002 * 113.61134 * 139.98076 * 13 12 10 16 16 N 1.46494 * 109.47022 * 87.50362 * 15 13 12 17 17 C 1.34786 * 119.99947 * 179.97438 * 16 15 13 18 18 O 1.21274 * 119.99769 * 0.02562 * 17 16 15 19 19 C 1.50702 * 119.99597 * 179.97438 * 17 16 15 20 20 C 1.50701 * 109.46508 * 180.02562 * 19 17 16 21 21 C 1.38244 * 119.98433 * 264.97816 * 20 19 17 22 22 C 1.38184 * 120.04306 * 179.97438 * 21 20 19 23 23 C 1.38485 * 119.99780 * 0.02739 * 22 21 20 24 24 F 1.35106 * 120.01900 * 179.97438 * 23 22 21 25 25 C 1.38418 * 119.96207 * 359.73895 * 23 22 21 26 26 C 1.38332 * 119.96484 * 0.51491 * 25 23 22 27 27 Cl 1.73599 * 120.00615 * 179.74436 * 26 25 23 28 28 C 1.53775 * 113.61627 * 204.99997 * 10 9 7 29 29 H 0.96999 * 119.99989 * 0.02562 * 1 2 3 30 30 H 0.97006 * 120.00358 * 0.02562 * 9 7 2 31 31 H 1.08999 * 113.61262 * 334.57369 * 12 10 9 32 32 H 1.08997 * 113.61288 * 203.66606 * 12 10 9 33 33 H 1.08998 * 109.47129 * 327.50519 * 15 13 12 34 34 H 1.09001 * 109.47250 * 207.50503 * 15 13 12 35 35 H 0.96998 * 120.00229 * 0.02562 * 16 15 13 36 36 H 1.08998 * 109.47166 * 60.00528 * 19 17 16 37 37 H 1.08996 * 109.47141 * 299.99697 * 19 17 16 38 38 H 1.08002 * 119.98051 * 359.97438 * 21 20 19 39 39 H 1.08000 * 120.00112 * 180.02562 * 22 21 20 40 40 H 1.08005 * 120.02197 * 180.28184 * 25 23 22 41 41 H 1.09005 * 113.61455 * 156.33418 * 28 10 9 42 42 H 1.09001 * 113.69199 * 25.44389 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 3.0656 -3.5639 -0.4060 12 6 1.9991 -4.4022 1.3433 13 6 0.7204 -5.0791 0.8221 14 1 -0.1910 -4.5251 1.0465 15 6 0.6196 -6.5616 1.1866 16 7 -0.0122 -6.6994 2.5011 17 6 -0.2069 -7.9236 3.0303 18 8 0.1414 -8.9111 2.4184 19 6 -0.8564 -8.0652 4.3828 20 6 -0.9557 -9.5254 4.7418 21 6 -2.1187 -10.2244 4.4769 22 6 -2.2109 -11.5636 4.8051 23 6 -1.1382 -12.2061 5.4003 24 9 -1.2281 -13.5152 5.7218 25 6 0.0279 -11.5075 5.6611 26 6 0.1168 -10.1657 5.3368 27 17 1.5764 -9.2868 5.6695 28 6 1.2601 -4.8288 -0.5960 29 1 -0.4850 0.8400 -0.0004 30 1 0.3556 -2.3881 -0.0005 31 1 1.8293 -3.7479 2.1984 32 1 2.8280 -5.0934 1.4958 33 1 1.6183 -6.9973 1.2161 34 1 0.0192 -7.0797 0.4388 35 1 -0.2911 -5.9096 2.9903 36 1 -1.8548 -7.6290 4.3539 37 1 -0.2553 -7.5477 5.1304 38 1 -2.9556 -9.7236 4.0131 39 1 -3.1196 -12.1091 4.5974 40 1 0.8668 -12.0087 6.1211 41 1 1.8870 -5.6367 -0.9735 42 1 0.4935 -4.5204 -1.3068 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263871590.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:38 Heat of formation + Delta-G solvation = -38.707878 kcal Electronic energy + Delta-G solvation = -25668.613846 eV Core-core repulsion = 21589.555758 eV Total energy + Delta-G solvation = -4079.058088 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.32784 -40.35509 -39.23851 -38.38488 -36.82461 -34.67402 -33.29264 -33.00241 -31.39580 -30.25048 -28.46763 -26.57008 -25.08068 -23.74605 -23.60324 -22.50288 -21.64134 -20.51190 -18.45842 -18.24499 -17.46231 -17.21379 -17.00236 -16.51327 -16.02217 -15.60668 -15.42693 -15.03148 -14.84436 -14.33610 -14.27610 -14.22686 -13.96339 -13.68202 -13.35746 -13.15338 -12.91896 -12.47715 -12.41144 -12.17043 -11.93772 -11.73264 -11.67747 -11.40544 -11.27527 -11.06742 -10.85330 -10.51669 -10.24311 -10.18142 -9.84750 -9.71765 -9.51118 -9.39949 -9.02251 -8.98031 -8.90122 -7.03299 -5.83742 -3.12741 0.54071 0.64300 1.66769 2.56314 2.86291 3.30223 3.40326 3.44999 3.45740 3.78659 4.13172 4.24135 4.43924 4.53147 4.65279 4.71453 4.94037 5.01517 5.05298 5.07227 5.18432 5.21633 5.42451 5.45660 5.46797 5.60081 5.63374 5.68631 5.83132 5.84623 5.93313 6.08412 6.19115 6.26798 6.34635 6.39169 6.56645 6.71666 6.87410 7.01443 7.46136 7.65883 8.16022 8.35505 9.46156 10.03568 10.37833 11.38585 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.025552 B = 0.001847 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.530255 B =15155.519123 C =15370.756335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.243 4.243 8 H 0.072 0.928 9 N -0.705 5.705 10 C 0.167 3.833 11 H 0.062 0.938 12 C -0.168 4.168 13 C -0.119 4.119 14 H 0.093 0.907 15 C 0.132 3.868 16 N -0.723 5.723 17 C 0.515 3.485 18 O -0.536 6.536 19 C -0.111 4.111 20 C -0.063 4.063 21 C -0.066 4.066 22 C -0.147 4.147 23 C 0.110 3.890 24 F -0.134 7.134 25 C -0.146 4.146 26 C 0.006 3.994 27 Cl -0.050 7.050 28 C -0.148 4.148 29 H 0.256 0.744 30 H 0.385 0.615 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.403 0.597 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.143 0.857 39 H 0.143 0.857 40 H 0.146 0.854 41 H 0.076 0.924 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.484 -22.929 12.561 26.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.374 4.374 8 H 0.090 0.910 9 N -0.344 5.344 10 C 0.055 3.945 11 H 0.080 0.920 12 C -0.209 4.209 13 C -0.138 4.138 14 H 0.111 0.889 15 C 0.009 3.991 16 N -0.375 5.375 17 C 0.300 3.700 18 O -0.412 6.412 19 C -0.151 4.151 20 C -0.064 4.064 21 C -0.084 4.084 22 C -0.166 4.166 23 C 0.090 3.910 24 F -0.113 7.113 25 C -0.166 4.166 26 C -0.021 4.021 27 Cl -0.021 7.021 28 C -0.188 4.188 29 H 0.066 0.934 30 H 0.219 0.781 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.237 0.763 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.161 0.839 39 H 0.160 0.840 40 H 0.164 0.836 41 H 0.095 0.905 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.980 -23.418 12.124 26.669 hybrid contribution 0.101 1.090 0.397 1.164 sum -3.879 -22.328 12.522 25.892 Atomic orbital electron populations 1.69647 1.05128 1.25911 1.57403 1.24765 0.95552 0.97794 1.02763 0.86240 0.78518 0.83349 0.77904 1.21200 1.21680 1.21217 1.19247 0.91100 0.83981 1.43080 0.91046 1.42157 1.05657 0.99417 1.87163 1.21055 0.95108 0.85593 0.92766 0.91994 1.23885 0.95671 0.99612 1.01744 1.22709 0.99552 0.92927 0.98604 0.88882 1.21477 0.97597 0.96995 0.83058 1.46047 1.62222 1.07968 1.21224 1.20279 0.79185 0.83495 0.87056 1.90723 1.50714 1.37470 1.62332 1.20755 1.04085 0.93640 0.96580 1.19221 0.92977 0.95582 0.98658 1.20846 0.97171 0.93169 0.97222 1.21207 0.98859 0.95566 1.00973 1.17445 0.94879 0.78549 1.00101 1.91530 1.96585 1.32546 1.90605 1.20920 0.98441 0.93147 1.04066 1.20455 0.88679 0.92179 1.00759 1.98400 1.34693 1.75392 1.93596 1.23444 1.00500 0.99704 0.95130 0.93388 0.78123 0.91510 0.91434 0.91605 0.91870 0.76286 0.87140 0.87189 0.83921 0.83954 0.83623 0.90498 0.91339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.37 13.06 55.49 0.72 -26.65 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 21.90 29.55 -169.99 -5.02 16.88 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.24 -6.57 9.97 -15.06 -0.15 -6.72 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.46 16 9 N -0.71 -16.99 5.31 -52.64 -0.28 -17.27 16 10 C 0.17 3.18 4.56 -67.12 -0.31 2.87 16 11 H 0.06 1.20 8.10 -51.93 -0.42 0.77 16 12 C -0.17 -2.70 7.43 -25.92 -0.19 -2.89 16 13 C -0.12 -1.69 3.63 -89.81 -0.33 -2.02 16 14 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 15 C 0.13 1.68 5.51 -4.04 -0.02 1.65 16 16 N -0.72 -7.99 5.56 -60.30 -0.33 -8.32 16 17 C 0.51 5.97 7.82 -10.98 -0.09 5.89 16 18 O -0.54 -8.25 16.03 5.56 0.09 -8.17 16 19 C -0.11 -0.90 5.34 -29.03 -0.16 -1.06 16 20 C -0.06 -0.57 4.38 -104.58 -0.46 -1.03 16 21 C -0.07 -0.51 9.68 -39.60 -0.38 -0.89 16 22 C -0.15 -1.13 10.03 -39.51 -0.40 -1.52 16 23 C 0.11 0.98 7.30 -39.42 -0.29 0.69 16 24 F -0.13 -1.26 17.27 2.25 0.04 -1.22 16 25 C -0.15 -1.33 9.81 -39.48 -0.39 -1.72 16 26 C 0.01 0.06 6.31 -39.51 -0.25 -0.19 16 27 Cl -0.05 -0.50 27.40 -51.86 -1.42 -1.92 16 28 C -0.15 -2.30 7.39 -25.92 -0.19 -2.49 16 29 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.38 9.77 7.90 -40.82 -0.32 9.45 16 31 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.07 0.99 7.90 -51.93 -0.41 0.58 16 33 H 0.07 0.89 7.84 -51.93 -0.41 0.48 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.40 3.70 8.47 -40.82 -0.35 3.35 16 36 H 0.11 0.59 8.05 -51.93 -0.42 0.17 16 37 H 0.11 0.79 7.12 -51.93 -0.37 0.42 16 38 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 39 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 40 H 0.15 1.11 8.06 -52.48 -0.42 0.69 16 41 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 42 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 376.51 15.07 5.67 5.67 Total: -1.00 -31.91 376.51 -9.84 -41.75 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -5.62 Total: 9.11 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: -3.69 Total: -9.88 kcal Atomic # 7 Polarization: -52.35 SS G_CDS: 0.11 Total: -52.24 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: 0.09 Total: -8.17 kcal Atomic # 9 Polarization: -1.26 SS G_CDS: 0.04 Total: -1.22 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.42 Total: -1.92 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.91 -9.84 -41.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263871590.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.046 kcal (2) G-P(sol) polarization free energy of solvation -31.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds