Wall clock time and date at job start Sat Apr 11 2020 05:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 120.00171 * 2 1 4 4 H 1.48503 * 109.47304 * 239.99859 * 3 2 1 5 5 H 1.48501 * 109.47192 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47135 * 119.99991 * 3 2 1 7 7 C 1.38821 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.07987 * 120.00082 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99659 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00135 * 180.02562 * 9 7 2 11 11 H 1.09002 * 112.84567 * 336.19350 * 10 9 7 12 12 C 1.53782 * 113.61704 * 107.49852 * 10 9 7 13 13 C 1.53785 * 87.07795 * 89.11803 * 12 10 9 14 14 H 1.08997 * 113.69356 * 270.87256 * 13 12 10 15 15 C 1.53002 * 113.61134 * 139.98076 * 13 12 10 16 16 N 1.46494 * 109.47022 * 87.50362 * 15 13 12 17 17 C 1.34786 * 119.99947 * 179.97438 * 16 15 13 18 18 O 1.21274 * 119.99769 * 0.02562 * 17 16 15 19 19 C 1.50702 * 119.99597 * 179.97438 * 17 16 15 20 20 C 1.50701 * 109.46508 * 180.02562 * 19 17 16 21 21 C 1.38244 * 119.98433 * 264.97816 * 20 19 17 22 22 C 1.38184 * 120.04306 * 179.97438 * 21 20 19 23 23 C 1.38485 * 119.99780 * 0.02739 * 22 21 20 24 24 F 1.35106 * 120.01900 * 179.97438 * 23 22 21 25 25 C 1.38418 * 119.96207 * 359.73895 * 23 22 21 26 26 C 1.38332 * 119.96484 * 0.51491 * 25 23 22 27 27 Cl 1.73599 * 120.00615 * 179.74436 * 26 25 23 28 28 C 1.53775 * 113.61627 * 204.99997 * 10 9 7 29 29 H 0.96999 * 119.99989 * 0.02562 * 1 2 3 30 30 H 0.97006 * 120.00358 * 0.02562 * 9 7 2 31 31 H 1.08999 * 113.61262 * 334.57369 * 12 10 9 32 32 H 1.08997 * 113.61288 * 203.66606 * 12 10 9 33 33 H 1.08998 * 109.47129 * 327.50519 * 15 13 12 34 34 H 1.09001 * 109.47250 * 207.50503 * 15 13 12 35 35 H 0.96998 * 120.00229 * 0.02562 * 16 15 13 36 36 H 1.08998 * 109.47166 * 60.00528 * 19 17 16 37 37 H 1.08996 * 109.47141 * 299.99697 * 19 17 16 38 38 H 1.08002 * 119.98051 * 359.97438 * 21 20 19 39 39 H 1.08000 * 120.00112 * 180.02562 * 22 21 20 40 40 H 1.08005 * 120.02197 * 180.28184 * 25 23 22 41 41 H 1.09005 * 113.61455 * 156.33418 * 28 10 9 42 42 H 1.09001 * 113.69199 * 25.44389 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 3.0656 -3.5639 -0.4060 12 6 1.9991 -4.4022 1.3433 13 6 0.7204 -5.0791 0.8221 14 1 -0.1910 -4.5251 1.0465 15 6 0.6196 -6.5616 1.1866 16 7 -0.0122 -6.6994 2.5011 17 6 -0.2069 -7.9236 3.0303 18 8 0.1414 -8.9111 2.4184 19 6 -0.8564 -8.0652 4.3828 20 6 -0.9557 -9.5254 4.7418 21 6 -2.1187 -10.2244 4.4769 22 6 -2.2109 -11.5636 4.8051 23 6 -1.1382 -12.2061 5.4003 24 9 -1.2281 -13.5152 5.7218 25 6 0.0279 -11.5075 5.6611 26 6 0.1168 -10.1657 5.3368 27 17 1.5764 -9.2868 5.6695 28 6 1.2601 -4.8288 -0.5960 29 1 -0.4850 0.8400 -0.0004 30 1 0.3556 -2.3881 -0.0005 31 1 1.8293 -3.7479 2.1984 32 1 2.8280 -5.0934 1.4958 33 1 1.6183 -6.9973 1.2161 34 1 0.0192 -7.0797 0.4388 35 1 -0.2911 -5.9096 2.9903 36 1 -1.8548 -7.6290 4.3539 37 1 -0.2553 -7.5477 5.1304 38 1 -2.9556 -9.7236 4.0131 39 1 -3.1196 -12.1091 4.5974 40 1 0.8668 -12.0087 6.1211 41 1 1.8870 -5.6367 -0.9735 42 1 0.4935 -4.5204 -1.3068 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263871590.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:38 Heat of formation + Delta-G solvation = -57.532524 kcal Electronic energy + Delta-G solvation = -25669.430144 eV Core-core repulsion = 21589.555758 eV Total energy + Delta-G solvation = -4079.874386 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.01119 -41.17885 -40.24546 -39.49736 -37.52990 -35.96139 -34.91069 -33.76266 -32.06641 -31.99343 -29.48051 -27.59743 -26.41871 -25.61396 -24.22328 -23.43955 -22.75299 -21.40788 -19.81518 -19.32358 -18.91255 -18.02342 -17.86660 -17.39288 -16.71649 -16.70383 -16.43675 -16.24894 -15.81864 -15.69218 -15.53157 -14.96262 -14.84416 -14.80021 -14.60278 -14.43938 -13.96190 -13.72085 -13.30214 -13.08065 -13.01629 -12.90393 -12.84467 -12.58973 -12.39857 -12.27362 -12.19340 -12.05888 -11.99271 -11.52577 -11.46113 -11.03967 -10.88075 -10.73186 -10.04515 -9.99832 -9.64798 -8.98489 -7.94354 -5.22246 -0.11122 0.01913 0.97358 1.48930 1.51016 1.57121 1.68976 2.13276 2.53221 2.56682 3.14830 3.38071 3.52059 3.62574 3.73292 3.81152 3.83273 3.88618 4.04289 4.08065 4.18722 4.34166 4.35539 4.43607 4.46187 4.64203 4.75002 4.80495 4.85264 4.88254 4.94333 5.01664 5.04345 5.13738 5.22485 5.31954 5.37956 5.51349 5.58592 5.66552 5.68342 6.29352 6.60258 7.29112 7.34594 8.11874 8.34467 9.28520 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.025552 B = 0.001847 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.530255 B =15155.519123 C =15370.756335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.074 4.074 3 Si 0.972 3.028 4 H -0.280 1.280 5 H -0.296 1.296 6 H -0.278 1.278 7 C -0.243 4.243 8 H 0.075 0.925 9 N -0.719 5.719 10 C 0.143 3.857 11 H 0.057 0.943 12 C -0.153 4.153 13 C -0.100 4.100 14 H 0.085 0.915 15 C 0.142 3.858 16 N -0.719 5.719 17 C 0.515 3.485 18 O -0.576 6.576 19 C -0.106 4.106 20 C -0.075 4.075 21 C -0.066 4.066 22 C -0.144 4.144 23 C 0.096 3.904 24 F -0.140 7.140 25 C -0.156 4.156 26 C -0.010 4.010 27 Cl -0.059 7.059 28 C -0.136 4.136 29 H 0.251 0.749 30 H 0.375 0.625 31 H 0.049 0.951 32 H 0.088 0.912 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.413 0.587 36 H 0.144 0.856 37 H 0.119 0.881 38 H 0.170 0.830 39 H 0.166 0.834 40 H 0.152 0.848 41 H 0.102 0.898 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.797 -23.621 12.982 27.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.267 4.267 3 Si 0.801 3.199 4 H -0.206 1.206 5 H -0.222 1.222 6 H -0.205 1.205 7 C -0.375 4.375 8 H 0.093 0.907 9 N -0.357 5.357 10 C 0.033 3.967 11 H 0.075 0.925 12 C -0.193 4.193 13 C -0.118 4.118 14 H 0.103 0.897 15 C 0.018 3.982 16 N -0.371 5.371 17 C 0.302 3.698 18 O -0.455 6.455 19 C -0.145 4.145 20 C -0.076 4.076 21 C -0.084 4.084 22 C -0.163 4.163 23 C 0.077 3.923 24 F -0.118 7.118 25 C -0.175 4.175 26 C -0.036 4.036 27 Cl -0.030 7.030 28 C -0.175 4.175 29 H 0.060 0.940 30 H 0.207 0.793 31 H 0.068 0.932 32 H 0.106 0.894 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.249 0.751 36 H 0.162 0.838 37 H 0.137 0.863 38 H 0.187 0.813 39 H 0.183 0.817 40 H 0.169 0.831 41 H 0.121 0.879 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.259 -24.136 12.564 27.542 hybrid contribution 0.236 1.209 0.250 1.257 sum -4.023 -22.927 12.815 26.571 Atomic orbital electron populations 1.69793 1.06458 1.26117 1.59406 1.25528 0.96397 1.00956 1.03775 0.85239 0.77211 0.79353 0.78113 1.20589 1.22231 1.20463 1.19620 0.91480 0.85245 1.41185 0.90718 1.42271 1.05320 1.00456 1.87642 1.21385 0.94982 0.84984 0.95371 0.92505 1.23697 0.97379 0.99171 0.99101 1.22480 0.98288 0.93806 0.97261 0.89699 1.21238 0.97619 0.95300 0.84020 1.45992 1.61835 1.08552 1.20681 1.20811 0.78393 0.82738 0.87845 1.90709 1.52453 1.38681 1.63674 1.20804 1.05734 0.93554 0.94395 1.19463 0.93264 0.96201 0.98676 1.21201 0.97456 0.93169 0.96543 1.21519 0.99194 0.95770 0.99785 1.17642 0.95422 0.78457 1.00811 1.91513 1.96634 1.32936 1.90763 1.21048 0.98958 0.93217 1.04290 1.20617 0.88758 0.92490 1.01782 1.98389 1.35348 1.75557 1.93732 1.23345 0.99969 0.98561 0.95633 0.94012 0.79265 0.93218 0.89378 0.91980 0.91919 0.75078 0.83809 0.86254 0.81256 0.81661 0.83075 0.87937 0.92342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.55 13.06 21.65 0.28 -57.27 16 2 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 3 Si 0.97 45.19 29.55 68.60 2.03 47.22 16 4 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 5 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 6 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 7 C -0.24 -13.19 9.97 84.04 0.84 -12.35 16 8 H 0.07 3.90 7.83 -2.92 -0.02 3.88 16 9 N -0.72 -34.76 5.31 -320.46 -1.70 -36.46 16 10 C 0.14 5.32 4.56 45.52 0.21 5.53 16 11 H 0.06 2.15 8.10 -2.39 -0.02 2.13 16 12 C -0.15 -4.69 7.43 31.12 0.23 -4.46 16 13 C -0.10 -2.67 3.63 -10.27 -0.04 -2.71 16 14 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 15 C 0.14 3.32 5.51 86.38 0.48 3.80 16 16 N -0.72 -14.35 5.56 -463.06 -2.57 -16.92 16 17 C 0.51 10.93 7.82 87.66 0.69 11.61 16 18 O -0.58 -16.94 16.03 -3.01 -0.05 -16.99 16 19 C -0.11 -1.46 5.34 29.10 0.16 -1.30 16 20 C -0.07 -1.22 4.38 -19.84 -0.09 -1.31 16 21 C -0.07 -0.85 9.68 22.26 0.22 -0.63 16 22 C -0.14 -1.91 10.03 22.32 0.22 -1.68 16 23 C 0.10 1.63 7.30 22.37 0.16 1.79 16 24 F -0.14 -2.53 17.27 44.97 0.78 -1.75 16 25 C -0.16 -2.76 9.81 22.34 0.22 -2.54 16 26 C -0.01 -0.18 6.31 22.32 0.14 -0.04 16 27 Cl -0.06 -1.15 27.40 -2.72 -0.07 -1.22 16 28 C -0.14 -4.02 7.39 31.12 0.23 -3.79 16 29 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 30 H 0.38 19.33 7.90 -92.70 -0.73 18.60 16 31 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.09 2.36 7.90 -2.39 -0.02 2.34 16 33 H 0.06 1.54 7.84 -2.39 -0.02 1.52 16 34 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.41 6.63 8.47 -92.71 -0.79 5.85 16 36 H 0.14 1.00 8.05 -2.39 -0.02 0.98 16 37 H 0.12 1.45 7.12 -2.39 -0.02 1.43 16 38 H 0.17 1.19 8.06 -2.91 -0.02 1.17 16 39 H 0.17 1.34 8.06 -2.91 -0.02 1.31 16 40 H 0.15 2.32 8.06 -2.91 -0.02 2.30 16 41 H 0.10 2.53 8.10 -2.38 -0.02 2.51 16 42 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -69.10 376.51 2.37 -66.73 By element: Atomic # 1 Polarization: 28.89 SS G_CDS: -0.45 Total: 28.44 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: 4.13 Total: -11.77 kcal Atomic # 7 Polarization: -106.67 SS G_CDS: -3.99 Total: -110.66 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: -0.05 Total: -16.99 kcal Atomic # 9 Polarization: -2.53 SS G_CDS: 0.78 Total: -1.75 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -0.07 Total: -1.22 kcal Total: -69.10 2.37 -66.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263871590.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.198 kcal (2) G-P(sol) polarization free energy of solvation -69.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds