Wall clock time and date at job start Sat Apr 11 2020 05:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86800 * 119.99994 * 2 1 4 4 H 1.48508 * 109.47046 * 239.99645 * 3 2 1 5 5 H 1.48499 * 109.47205 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47134 * 120.00169 * 3 2 1 7 7 C 1.38812 * 120.00149 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00516 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99829 * 0.02562 * 7 2 1 10 10 C 1.46495 * 119.99885 * 179.97438 * 9 7 2 11 11 H 1.09006 * 112.85440 * 336.18946 * 10 9 7 12 12 C 1.53957 * 113.53882 * 107.50292 * 10 9 7 13 13 C 1.53784 * 87.01962 * 89.18999 * 12 10 9 14 14 H 1.09002 * 113.60615 * 270.77214 * 13 12 10 15 15 C 1.52991 * 113.61513 * 139.95473 * 13 12 10 16 16 N 1.46503 * 109.47493 * 85.85880 * 15 13 12 17 17 C 1.34774 * 120.00493 * 179.97438 * 16 15 13 18 18 O 1.21283 * 119.99854 * 0.02562 * 17 16 15 19 19 C 1.50695 * 120.00101 * 180.02562 * 17 16 15 20 20 C 1.50704 * 109.47259 * 180.02562 * 19 17 16 21 21 C 1.38261 * 119.97312 * 270.30512 * 20 19 17 22 22 C 1.38190 * 120.05324 * 180.30172 * 21 20 19 23 23 C 1.38450 * 119.98570 * 359.41218 * 22 21 20 24 24 F 1.35095 * 120.03304 * 180.25992 * 23 22 21 25 25 C 1.38547 * 119.93406 * 0.28486 * 23 22 21 26 26 Cl 1.73609 * 120.02050 * 180.02562 * 25 23 22 27 27 C 1.38222 * 119.96804 * 89.99799 * 20 19 17 28 28 C 1.53775 * 87.17120 * 25.36145 * 13 12 10 29 29 H 0.96997 * 120.00167 * 0.02562 * 1 2 3 30 30 H 0.96997 * 119.99830 * 359.97438 * 9 7 2 31 31 H 1.08996 * 113.66721 * 334.65519 * 12 10 9 32 32 H 1.09005 * 113.60948 * 203.70849 * 12 10 9 33 33 H 1.09001 * 109.47295 * 325.86150 * 15 13 12 34 34 H 1.09003 * 109.47497 * 205.86056 * 15 13 12 35 35 H 0.97006 * 119.99628 * 0.02562 * 16 15 13 36 36 H 1.08994 * 109.47223 * 60.00458 * 19 17 16 37 37 H 1.09004 * 109.47132 * 300.00111 * 19 17 16 38 38 H 1.08010 * 119.97345 * 0.02562 * 21 20 19 39 39 H 1.08002 * 120.01169 * 179.69768 * 22 21 20 40 40 H 1.07995 * 119.99029 * 0.02562 * 27 20 19 41 41 H 1.08998 * 113.61316 * 89.16688 * 28 13 12 42 42 H 1.09007 * 113.61618 * 219.97795 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6567 0.0005 11 1 3.0655 -3.5639 -0.4050 12 6 1.9978 -4.4015 1.3466 13 6 0.7204 -5.0791 0.8232 14 1 -0.1910 -4.5250 1.0476 15 6 0.6196 -6.5616 1.1878 16 7 0.0212 -6.6978 2.5180 17 6 -0.1676 -7.9216 3.0501 18 8 0.1584 -8.9102 2.4277 19 6 -0.7837 -8.0616 4.4182 20 6 -0.8829 -9.5218 4.7774 21 6 -2.0151 -10.2406 4.4410 22 6 -2.1104 -11.5781 4.7751 23 6 -1.0665 -12.2022 5.4364 24 9 -1.1565 -13.5110 5.7589 25 6 0.0705 -11.4830 5.7677 26 17 1.3812 -12.2636 6.5965 27 6 0.1608 -10.1430 5.4373 28 6 1.2601 -4.8288 -0.5948 29 1 -0.4850 0.8400 -0.0004 30 1 0.3555 -2.3880 0.0005 31 1 1.8262 -3.7472 2.2014 32 1 2.8268 -5.0923 1.5008 33 1 1.6160 -7.0036 1.1907 34 1 -0.0033 -7.0745 0.4549 35 1 -0.2399 -5.9071 3.0157 36 1 -1.7799 -7.6194 4.4150 37 1 -0.1609 -7.5490 5.1513 38 1 -2.8276 -9.7551 3.9206 39 1 -2.9972 -12.1376 4.5163 40 1 1.0465 -9.5817 5.6955 41 1 1.8868 -5.6367 -0.9724 42 1 0.4934 -4.5203 -1.3057 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263874245.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:40 Heat of formation + Delta-G solvation = -58.171215 kcal Electronic energy + Delta-G solvation = -25400.469472 eV Core-core repulsion = 21320.567391 eV Total energy + Delta-G solvation = -4079.902081 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.03901 -41.14800 -40.21505 -39.49262 -37.63014 -35.95098 -34.90082 -33.64606 -32.05837 -31.98171 -29.48158 -27.60287 -26.40997 -25.60920 -24.23915 -23.42229 -22.72772 -21.37411 -19.80570 -19.31669 -18.87395 -17.97664 -17.82058 -17.44809 -16.82420 -16.75389 -16.52837 -16.32793 -15.79806 -15.62144 -15.17173 -15.03439 -14.79703 -14.72432 -14.55806 -14.41714 -13.94765 -13.72698 -13.30519 -13.10474 -12.98930 -12.89720 -12.81813 -12.58080 -12.48783 -12.32968 -12.18804 -12.04970 -11.99104 -11.52194 -11.44989 -11.02109 -10.87320 -10.71819 -10.03128 -9.99056 -9.63720 -8.97767 -7.93913 -5.21752 -0.12259 0.04353 0.92826 1.49542 1.51485 1.57614 1.70820 2.14147 2.56834 2.57151 3.03005 3.38672 3.50512 3.63726 3.74364 3.83065 3.84645 4.03047 4.09770 4.11251 4.19860 4.32473 4.36303 4.44795 4.62012 4.66885 4.76317 4.81313 4.84904 4.89392 4.95493 5.02705 5.04283 5.14644 5.33486 5.34258 5.39121 5.52108 5.59582 5.65726 5.69455 6.29865 6.63154 7.31729 7.35149 8.12598 8.34939 9.28946 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.025846 B = 0.001655 C = 0.001636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.072155 B =16914.523057 C =17111.895888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.074 4.074 3 Si 0.971 3.029 4 H -0.280 1.280 5 H -0.296 1.296 6 H -0.278 1.278 7 C -0.243 4.243 8 H 0.075 0.925 9 N -0.719 5.719 10 C 0.142 3.858 11 H 0.056 0.944 12 C -0.152 4.152 13 C -0.099 4.099 14 H 0.084 0.916 15 C 0.141 3.859 16 N -0.718 5.718 17 C 0.511 3.489 18 O -0.583 6.583 19 C -0.097 4.097 20 C -0.066 4.066 21 C -0.072 4.072 22 C -0.139 4.139 23 C 0.085 3.915 24 F -0.138 7.138 25 C -0.087 4.087 26 Cl -0.060 7.060 27 C -0.077 4.077 28 C -0.137 4.137 29 H 0.251 0.749 30 H 0.375 0.625 31 H 0.050 0.950 32 H 0.089 0.911 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.414 0.586 36 H 0.141 0.859 37 H 0.133 0.867 38 H 0.164 0.836 39 H 0.166 0.834 40 H 0.151 0.849 41 H 0.102 0.898 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.389 -22.773 13.100 26.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.266 4.266 3 Si 0.800 3.200 4 H -0.206 1.206 5 H -0.223 1.223 6 H -0.204 1.204 7 C -0.375 4.375 8 H 0.093 0.907 9 N -0.357 5.357 10 C 0.032 3.968 11 H 0.075 0.925 12 C -0.192 4.192 13 C -0.118 4.118 14 H 0.102 0.898 15 C 0.017 3.983 16 N -0.370 5.370 17 C 0.298 3.702 18 O -0.463 6.463 19 C -0.136 4.136 20 C -0.067 4.067 21 C -0.090 4.090 22 C -0.158 4.158 23 C 0.065 3.935 24 F -0.117 7.117 25 C -0.114 4.114 26 Cl -0.031 7.031 27 C -0.095 4.095 28 C -0.176 4.176 29 H 0.060 0.940 30 H 0.207 0.793 31 H 0.069 0.931 32 H 0.107 0.893 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.251 0.749 36 H 0.159 0.841 37 H 0.151 0.849 38 H 0.181 0.819 39 H 0.184 0.816 40 H 0.169 0.831 41 H 0.120 0.880 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.885 -23.440 12.722 26.951 hybrid contribution 0.152 0.964 0.211 0.999 sum -3.734 -22.476 12.933 26.199 Atomic orbital electron populations 1.69787 1.06459 1.26110 1.59420 1.25518 0.96384 1.00940 1.03789 0.85248 0.77213 0.79381 0.78118 1.20638 1.22274 1.20412 1.19622 0.91483 0.85244 1.41159 0.90702 1.42273 1.05319 1.00471 1.87650 1.21433 0.94947 0.84958 0.95475 0.92533 1.23714 0.97353 0.99140 0.99022 1.22469 0.98315 0.93859 0.97171 0.89761 1.21230 0.98067 0.95234 0.83778 1.46006 1.63051 1.08664 1.19253 1.21026 0.78053 0.82563 0.88540 1.90730 1.52722 1.38758 1.64046 1.20771 1.06050 0.93181 0.93637 1.19546 0.93736 0.96097 0.97342 1.21346 0.98366 0.92861 0.96387 1.21390 0.98670 0.96229 0.99500 1.17717 0.95441 0.78636 1.01689 1.91505 1.96437 1.32875 1.90877 1.21097 0.90816 0.94896 1.04622 1.98381 1.47065 1.80807 1.76822 1.21020 0.99753 0.91503 0.97266 1.23348 0.99973 0.98594 0.95715 0.94023 0.79277 0.93074 0.89266 0.91866 0.92125 0.74917 0.84082 0.84878 0.81874 0.81632 0.83115 0.87962 0.92458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.11 13.06 21.65 0.28 -56.83 16 2 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 3 Si 0.97 44.78 29.55 68.60 2.03 46.81 16 4 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 5 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 6 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 7 C -0.24 -13.03 9.97 84.03 0.84 -12.19 16 8 H 0.08 3.86 7.83 -2.91 -0.02 3.84 16 9 N -0.72 -34.30 5.31 -320.16 -1.70 -36.00 16 10 C 0.14 5.17 4.57 45.58 0.21 5.38 16 11 H 0.06 2.10 8.10 -2.38 -0.02 2.08 16 12 C -0.15 -4.46 7.44 31.18 0.23 -4.22 16 13 C -0.10 -2.55 3.62 -10.27 -0.04 -2.59 16 14 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 15 C 0.14 3.10 5.50 86.38 0.47 3.57 16 16 N -0.72 -12.74 5.56 -463.07 -2.57 -15.31 16 17 C 0.51 9.54 7.82 87.66 0.69 10.23 16 18 O -0.58 -16.27 16.03 -3.04 -0.05 -16.31 16 19 C -0.10 -0.97 5.83 29.10 0.17 -0.80 16 20 C -0.07 -0.93 4.37 -19.86 -0.09 -1.02 16 21 C -0.07 -0.91 9.70 22.26 0.22 -0.69 16 22 C -0.14 -1.97 10.03 22.31 0.22 -1.75 16 23 C 0.09 1.60 7.28 22.39 0.16 1.77 16 24 F -0.14 -2.88 16.84 44.97 0.76 -2.12 16 25 C -0.09 -1.66 6.33 22.36 0.14 -1.52 16 26 Cl -0.06 -1.15 28.62 -2.72 -0.08 -1.23 16 27 C -0.08 -1.26 9.48 22.28 0.21 -1.05 16 28 C -0.14 -3.96 7.39 31.12 0.23 -3.73 16 29 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 30 H 0.37 19.09 7.90 -92.71 -0.73 18.36 16 31 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.09 2.26 7.92 -2.38 -0.02 2.24 16 33 H 0.06 1.47 7.87 -2.39 -0.02 1.45 16 34 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.41 5.64 8.47 -92.70 -0.79 4.85 16 36 H 0.14 0.58 8.09 -2.39 -0.02 0.56 16 37 H 0.13 0.74 8.08 -2.39 -0.02 0.72 16 38 H 0.16 1.21 8.06 -2.91 -0.02 1.18 16 39 H 0.17 1.53 8.06 -2.91 -0.02 1.51 16 40 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 41 H 0.10 2.46 8.10 -2.39 -0.02 2.44 16 42 H 0.06 1.80 8.14 -2.38 -0.02 1.79 16 Total: -1.00 -70.02 378.53 2.35 -67.67 By element: Atomic # 1 Polarization: 26.03 SS G_CDS: -0.45 Total: 25.58 kcal Atomic # 6 Polarization: -16.38 SS G_CDS: 4.14 Total: -12.25 kcal Atomic # 7 Polarization: -104.15 SS G_CDS: -3.99 Total: -108.14 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: -0.05 Total: -16.31 kcal Atomic # 9 Polarization: -2.88 SS G_CDS: 0.76 Total: -2.12 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -0.08 Total: -1.23 kcal Total: -70.02 2.35 -67.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263874245.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.496 kcal (2) G-P(sol) polarization free energy of solvation -70.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds