Wall clock time and date at job start Sat Apr 11 2020 05:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99864 * 2 1 4 4 H 1.48502 * 109.47383 * 240.00024 * 3 2 1 5 5 H 1.48504 * 109.47142 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47110 * 120.00017 * 3 2 1 7 7 C 1.38809 * 120.00400 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00695 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99744 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00042 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.46916 * 35.00284 * 10 9 7 12 12 C 1.52997 * 109.47141 * 154.99672 * 10 9 7 13 13 N 1.46499 * 109.47555 * 305.00435 * 12 10 9 14 14 C 1.34777 * 120.00199 * 180.02562 * 13 12 10 15 15 O 1.21283 * 119.99750 * 359.97438 * 14 13 12 16 16 C 1.50702 * 119.99928 * 180.27479 * 14 13 12 17 17 C 1.50700 * 109.46869 * 179.72354 * 16 14 13 18 18 C 1.38264 * 119.96824 * 269.72252 * 17 16 14 19 19 C 1.38194 * 120.04804 * 179.72692 * 18 17 16 20 20 C 1.38446 * 119.98801 * 0.52958 * 19 18 17 21 21 F 1.35097 * 120.03126 * 179.72765 * 20 19 18 22 22 C 1.38548 * 119.93609 * 359.74545 * 20 19 18 23 23 Cl 1.73599 * 120.02102 * 180.02562 * 22 20 19 24 24 C 1.38214 * 119.97033 * 90.00239 * 17 16 14 25 25 C 1.53002 * 109.47255 * 275.00032 * 10 9 7 26 26 C 1.53005 * 117.49847 * 128.74604 * 25 10 9 27 27 C 1.52998 * 117.49486 * 60.08861 * 25 10 9 28 28 H 0.96998 * 119.99891 * 359.97438 * 1 2 3 29 29 H 0.96998 * 119.99579 * 359.97438 * 9 7 2 30 30 H 1.08998 * 109.47382 * 184.99997 * 12 10 9 31 31 H 1.09002 * 109.47216 * 65.00434 * 12 10 9 32 32 H 0.97000 * 119.99484 * 359.97438 * 13 12 10 33 33 H 1.09004 * 109.46965 * 299.72211 * 16 14 13 34 34 H 1.08994 * 109.46990 * 59.72065 * 16 14 13 35 35 H 1.08003 * 119.97208 * 0.02562 * 18 17 16 36 36 H 1.07997 * 120.00195 * 180.24876 * 19 18 17 37 37 H 1.07996 * 119.99239 * 359.97438 * 24 17 16 38 38 H 1.08993 * 115.54595 * 274.41736 * 25 10 9 39 39 H 1.08996 * 117.49481 * 0.02562 * 26 25 10 40 40 H 1.08991 * 117.49647 * 145.02380 * 26 25 10 41 41 H 1.09009 * 117.49579 * 214.97633 * 27 25 10 42 42 H 1.09001 * 117.50251 * 359.97438 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 1 2.9688 -3.5505 0.5890 12 6 1.1810 -4.7521 0.6092 13 7 0.7343 -4.3354 1.9407 14 6 -0.0547 -5.1477 2.6717 15 8 -0.3952 -6.2234 2.2268 16 6 -0.5192 -4.7164 4.0389 17 6 -1.3871 -5.7933 4.6373 18 6 -2.7536 -5.7753 4.4271 19 6 -3.5503 -6.7651 4.9704 20 6 -2.9815 -7.7695 5.7349 21 9 -3.7603 -8.7345 6.2710 22 6 -1.6129 -7.7838 5.9499 23 17 -0.8972 -9.0425 6.9076 24 6 -0.8171 -6.7947 5.4006 25 6 2.4220 -4.0356 -1.4376 26 6 3.8823 -4.3891 -1.7267 27 6 3.3029 -3.0621 -2.2232 28 1 -0.4850 0.8400 0.0004 29 1 0.3556 -2.3880 0.0002 30 1 1.7559 -5.6745 0.6909 31 1 0.3134 -4.9201 -0.0290 32 1 1.0070 -3.4753 2.2966 33 1 0.3460 -4.5487 4.6804 34 1 -1.0925 -3.7934 3.9534 35 1 -3.1979 -4.9898 3.8339 36 1 -4.6171 -6.7526 4.8024 37 1 0.2498 -6.8054 5.5675 38 1 1.6542 -4.5774 -1.9896 39 1 4.5836 -4.3522 -0.8931 40 1 4.0751 -5.1632 -2.4694 41 1 3.1148 -2.9638 -3.2924 42 1 3.6228 -2.1516 -1.7165 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266432263.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:43 Heat of formation + Delta-G solvation = -32.744382 kcal Electronic energy + Delta-G solvation = -26130.093184 eV Core-core repulsion = 22051.293693 eV Total energy + Delta-G solvation = -4078.799491 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.14665 -40.06081 -38.84704 -37.55522 -36.76832 -34.69382 -33.43697 -32.76593 -31.20107 -30.97519 -28.58597 -27.05464 -23.82192 -23.42693 -22.71872 -21.82704 -21.68046 -20.24748 -19.51276 -18.03263 -17.50484 -16.95611 -16.70403 -16.40998 -15.92494 -15.44960 -15.29216 -14.97275 -14.51744 -14.35223 -14.18183 -13.95027 -13.74836 -13.58061 -13.24272 -13.13002 -12.86777 -12.45640 -12.23567 -11.87697 -11.63500 -11.52331 -11.41898 -11.20357 -11.14971 -10.92659 -10.90229 -10.76754 -10.21153 -9.99193 -9.81298 -9.54985 -9.35398 -9.21013 -9.04251 -8.76871 -8.69447 -7.11821 -5.88418 -3.18045 0.72972 0.85212 1.76919 2.85324 3.09644 3.34839 3.40535 3.41710 3.62716 3.85508 4.33381 4.36472 4.42635 4.54007 4.82269 4.89467 5.03928 5.11834 5.17945 5.38496 5.41619 5.44909 5.47105 5.55374 5.62519 5.67226 5.70455 5.84266 5.85063 5.96052 6.02457 6.13052 6.17118 6.34817 6.44850 6.50296 6.55058 6.72191 6.84085 6.93041 7.58337 7.85320 8.28619 8.48994 9.40937 9.94629 10.30863 11.33273 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.015053 B = 0.002338 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.663368 B =11971.252911 C =12998.519058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.008 4.008 3 Si 0.903 3.097 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.716 5.716 10 C 0.193 3.807 11 H 0.055 0.945 12 C 0.119 3.881 13 N -0.711 5.711 14 C 0.511 3.489 15 O -0.547 6.547 16 C -0.106 4.106 17 C -0.054 4.054 18 C -0.070 4.070 19 C -0.139 4.139 20 C 0.103 3.897 21 F -0.130 7.130 22 C -0.072 4.072 23 Cl -0.055 7.055 24 C -0.069 4.069 25 C -0.159 4.159 26 C -0.196 4.196 27 C -0.156 4.156 28 H 0.256 0.744 29 H 0.385 0.615 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.411 0.589 33 H 0.107 0.893 34 H 0.112 0.888 35 H 0.141 0.859 36 H 0.145 0.855 37 H 0.142 0.858 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.993 -12.458 10.631 16.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.205 4.205 3 Si 0.734 3.266 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.357 5.357 10 C 0.083 3.917 11 H 0.073 0.927 12 C -0.005 4.005 13 N -0.363 5.363 14 C 0.297 3.703 15 O -0.425 6.425 16 C -0.146 4.146 17 C -0.055 4.055 18 C -0.088 4.088 19 C -0.158 4.158 20 C 0.083 3.917 21 F -0.109 7.109 22 C -0.099 4.099 23 Cl -0.026 7.026 24 C -0.088 4.088 25 C -0.181 4.181 26 C -0.234 4.234 27 C -0.193 4.193 28 H 0.066 0.934 29 H 0.219 0.781 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.248 0.752 33 H 0.125 0.875 34 H 0.130 0.870 35 H 0.159 0.841 36 H 0.163 0.837 37 H 0.159 0.841 38 H 0.108 0.892 39 H 0.105 0.895 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.094 -13.206 10.429 16.957 hybrid contribution 0.207 1.101 0.041 1.121 sum -1.887 -12.105 10.470 16.115 Atomic orbital electron populations 1.69641 1.05052 1.25858 1.57151 1.24711 0.95437 0.97563 1.02779 0.86343 0.78599 0.83782 0.77876 1.21274 1.21759 1.21279 1.19107 0.90791 0.83839 1.43200 0.91206 1.42443 1.05798 0.99388 1.88117 1.20052 0.94324 0.86114 0.91244 0.92715 1.21590 0.98580 0.97498 0.82848 1.45965 1.50629 1.21817 1.17893 1.20318 0.78725 0.84691 0.86604 1.90709 1.56777 1.22637 1.72372 1.20706 1.00752 0.98321 0.94794 1.19336 0.93790 0.95781 0.96629 1.21046 0.92747 0.97963 0.97075 1.21091 1.01529 0.94249 0.98972 1.17399 0.86919 0.89011 0.98360 1.91525 1.74112 1.61138 1.84098 1.20891 0.91740 0.95100 1.02212 1.98380 1.83345 1.50896 1.70001 1.20803 1.00134 0.91985 0.95885 1.23031 0.92175 1.03090 0.99832 1.22961 0.97262 0.99826 1.03359 1.22783 1.03376 0.94032 0.99118 0.93402 0.78057 0.91688 0.91819 0.75244 0.87522 0.86953 0.84120 0.83734 0.84069 0.89168 0.89543 0.90090 0.90228 0.87710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.72 13.06 55.49 0.72 -24.99 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 3 Si 0.90 20.77 29.55 -169.99 -5.02 15.75 16 4 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.24 -5.79 8.63 -15.06 -0.13 -5.92 16 8 H 0.07 1.66 6.91 -52.49 -0.36 1.30 16 9 N -0.72 -15.44 4.54 -53.43 -0.24 -15.68 16 10 C 0.19 3.36 2.70 -67.93 -0.18 3.18 16 11 H 0.05 0.97 7.84 -51.93 -0.41 0.56 16 12 C 0.12 1.89 5.21 -4.04 -0.02 1.86 16 13 N -0.71 -10.42 5.39 -60.29 -0.32 -10.74 16 14 C 0.51 7.28 7.82 -10.98 -0.09 7.20 16 15 O -0.55 -9.67 16.03 5.55 0.09 -9.58 16 16 C -0.11 -1.09 5.83 -29.03 -0.17 -1.26 16 17 C -0.05 -0.59 4.37 -104.62 -0.46 -1.05 16 18 C -0.07 -0.72 9.70 -39.59 -0.38 -1.11 16 19 C -0.14 -1.41 10.03 -39.52 -0.40 -1.80 16 20 C 0.10 1.19 7.28 -39.39 -0.29 0.90 16 21 F -0.13 -1.56 16.84 2.25 0.04 -1.52 16 22 C -0.07 -0.83 6.33 -39.44 -0.25 -1.08 16 23 Cl -0.06 -0.60 28.62 -51.86 -1.48 -2.09 16 24 C -0.07 -0.75 9.48 -39.56 -0.38 -1.13 16 25 C -0.16 -2.66 5.36 -90.62 -0.49 -3.15 16 26 C -0.20 -2.86 10.18 -26.69 -0.27 -3.13 16 27 C -0.16 -2.67 9.78 -26.69 -0.26 -2.93 16 28 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 29 H 0.39 9.12 7.80 -40.82 -0.32 8.80 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.41 5.99 8.14 -40.82 -0.33 5.65 16 33 H 0.11 0.85 8.09 -51.93 -0.42 0.43 16 34 H 0.11 1.01 8.08 -51.93 -0.42 0.59 16 35 H 0.14 1.23 8.06 -52.48 -0.42 0.81 16 36 H 0.14 1.13 8.06 -52.49 -0.42 0.70 16 37 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 38 H 0.09 1.48 8.11 -51.93 -0.42 1.06 16 39 H 0.09 1.21 8.05 -51.93 -0.42 0.79 16 40 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.08 1.30 8.14 -51.92 -0.42 0.87 16 42 H 0.10 2.01 6.23 -51.93 -0.32 1.69 16 LS Contribution 377.84 15.07 5.69 5.69 Total: -1.00 -29.05 377.84 -9.90 -38.95 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: -5.52 Total: 13.94 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: -3.85 Total: -9.73 kcal Atomic # 7 Polarization: -51.57 SS G_CDS: 0.16 Total: -51.42 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.09 Total: -9.58 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.04 Total: -1.52 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -1.48 Total: -2.09 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.05 -9.90 -38.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266432263.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.201 kcal (2) G-P(sol) polarization free energy of solvation -29.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds