Wall clock time and date at job start Sat Apr 11 2020 05:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99864 * 2 1 4 4 H 1.48502 * 109.47383 * 240.00024 * 3 2 1 5 5 H 1.48504 * 109.47142 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47110 * 120.00017 * 3 2 1 7 7 C 1.38809 * 120.00400 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00695 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99744 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00042 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.46916 * 35.00284 * 10 9 7 12 12 C 1.52997 * 109.47141 * 154.99672 * 10 9 7 13 13 N 1.46499 * 109.47555 * 305.00435 * 12 10 9 14 14 C 1.34777 * 120.00199 * 180.02562 * 13 12 10 15 15 O 1.21283 * 119.99750 * 359.97438 * 14 13 12 16 16 C 1.50702 * 119.99928 * 180.27479 * 14 13 12 17 17 C 1.50700 * 109.46869 * 179.72354 * 16 14 13 18 18 C 1.38264 * 119.96824 * 269.72252 * 17 16 14 19 19 C 1.38194 * 120.04804 * 179.72692 * 18 17 16 20 20 C 1.38446 * 119.98801 * 0.52958 * 19 18 17 21 21 F 1.35097 * 120.03126 * 179.72765 * 20 19 18 22 22 C 1.38548 * 119.93609 * 359.74545 * 20 19 18 23 23 Cl 1.73599 * 120.02102 * 180.02562 * 22 20 19 24 24 C 1.38214 * 119.97033 * 90.00239 * 17 16 14 25 25 C 1.53002 * 109.47255 * 275.00032 * 10 9 7 26 26 C 1.53005 * 117.49847 * 128.74604 * 25 10 9 27 27 C 1.52998 * 117.49486 * 60.08861 * 25 10 9 28 28 H 0.96998 * 119.99891 * 359.97438 * 1 2 3 29 29 H 0.96998 * 119.99579 * 359.97438 * 9 7 2 30 30 H 1.08998 * 109.47382 * 184.99997 * 12 10 9 31 31 H 1.09002 * 109.47216 * 65.00434 * 12 10 9 32 32 H 0.97000 * 119.99484 * 359.97438 * 13 12 10 33 33 H 1.09004 * 109.46965 * 299.72211 * 16 14 13 34 34 H 1.08994 * 109.46990 * 59.72065 * 16 14 13 35 35 H 1.08003 * 119.97208 * 0.02562 * 18 17 16 36 36 H 1.07997 * 120.00195 * 180.24876 * 19 18 17 37 37 H 1.07996 * 119.99239 * 359.97438 * 24 17 16 38 38 H 1.08993 * 115.54595 * 274.41736 * 25 10 9 39 39 H 1.08996 * 117.49481 * 0.02562 * 26 25 10 40 40 H 1.08991 * 117.49647 * 145.02380 * 26 25 10 41 41 H 1.09009 * 117.49579 * 214.97633 * 27 25 10 42 42 H 1.09001 * 117.50251 * 359.97438 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 1 2.9688 -3.5505 0.5890 12 6 1.1810 -4.7521 0.6092 13 7 0.7343 -4.3354 1.9407 14 6 -0.0547 -5.1477 2.6717 15 8 -0.3952 -6.2234 2.2268 16 6 -0.5192 -4.7164 4.0389 17 6 -1.3871 -5.7933 4.6373 18 6 -2.7536 -5.7753 4.4271 19 6 -3.5503 -6.7651 4.9704 20 6 -2.9815 -7.7695 5.7349 21 9 -3.7603 -8.7345 6.2710 22 6 -1.6129 -7.7838 5.9499 23 17 -0.8972 -9.0425 6.9076 24 6 -0.8171 -6.7947 5.4006 25 6 2.4220 -4.0356 -1.4376 26 6 3.8823 -4.3891 -1.7267 27 6 3.3029 -3.0621 -2.2232 28 1 -0.4850 0.8400 0.0004 29 1 0.3556 -2.3880 0.0002 30 1 1.7559 -5.6745 0.6909 31 1 0.3134 -4.9201 -0.0290 32 1 1.0070 -3.4753 2.2966 33 1 0.3460 -4.5487 4.6804 34 1 -1.0925 -3.7934 3.9534 35 1 -3.1979 -4.9898 3.8339 36 1 -4.6171 -6.7526 4.8024 37 1 0.2498 -6.8054 5.5675 38 1 1.6542 -4.5774 -1.9896 39 1 4.5836 -4.3522 -0.8931 40 1 4.0751 -5.1632 -2.4694 41 1 3.1148 -2.9638 -3.2924 42 1 3.6228 -2.1516 -1.7165 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266432263.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:43 Heat of formation + Delta-G solvation = -48.280205 kcal Electronic energy + Delta-G solvation = -26130.766867 eV Core-core repulsion = 22051.293693 eV Total energy + Delta-G solvation = -4079.473175 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.03009 -41.06786 -39.87406 -38.90244 -37.61954 -36.03788 -35.08165 -33.68235 -32.60697 -31.99195 -29.97065 -28.14512 -25.51442 -24.24073 -24.01934 -23.01947 -22.75789 -21.48627 -20.81763 -19.24533 -18.85770 -17.92922 -17.80675 -17.39716 -16.83044 -16.81423 -16.48376 -16.23260 -15.99563 -15.41548 -15.27716 -15.06525 -14.92787 -14.78706 -14.53741 -14.33928 -13.88847 -13.72424 -13.17229 -12.97543 -12.87604 -12.78130 -12.62154 -12.47772 -12.40236 -12.32893 -12.21722 -11.99939 -11.97961 -11.69649 -11.05835 -10.96521 -10.80399 -10.71890 -10.02338 -9.93563 -9.63102 -8.95503 -7.85157 -5.12001 -0.11607 0.05007 0.92606 1.52855 1.54526 1.59078 1.74183 2.17882 2.58384 2.63072 3.02830 3.10254 3.51218 3.52189 3.64611 3.83937 4.01073 4.04653 4.05528 4.12184 4.20982 4.32664 4.40140 4.43043 4.60224 4.64315 4.66916 4.72015 4.83369 4.87895 4.91835 4.93799 5.04528 5.18032 5.21043 5.36734 5.42113 5.50452 5.60495 5.65397 5.65459 6.34848 6.69119 7.34768 7.43766 8.14712 8.40432 9.37232 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.015053 B = 0.002338 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.663368 B =11971.252911 C =12998.519058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.067 4.067 3 Si 0.956 3.044 4 H -0.286 1.286 5 H -0.304 1.304 6 H -0.278 1.278 7 C -0.217 4.217 8 H 0.075 0.925 9 N -0.722 5.722 10 C 0.198 3.802 11 H 0.058 0.942 12 C 0.129 3.871 13 N -0.711 5.711 14 C 0.511 3.489 15 O -0.583 6.583 16 C -0.098 4.098 17 C -0.063 4.063 18 C -0.076 4.076 19 C -0.138 4.138 20 C 0.087 3.913 21 F -0.137 7.137 22 C -0.084 4.084 23 Cl -0.056 7.056 24 C -0.074 4.074 25 C -0.173 4.173 26 C -0.163 4.163 27 C -0.175 4.175 28 H 0.247 0.753 29 H 0.374 0.626 30 H 0.076 0.924 31 H 0.048 0.952 32 H 0.413 0.587 33 H 0.134 0.866 34 H 0.128 0.872 35 H 0.156 0.844 36 H 0.166 0.834 37 H 0.154 0.846 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.104 0.896 41 H 0.083 0.917 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.854 -12.891 10.986 16.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.260 4.260 3 Si 0.787 3.213 4 H -0.213 1.213 5 H -0.231 1.231 6 H -0.204 1.204 7 C -0.349 4.349 8 H 0.093 0.907 9 N -0.361 5.361 10 C 0.089 3.911 11 H 0.076 0.924 12 C 0.004 3.996 13 N -0.362 5.362 14 C 0.299 3.701 15 O -0.464 6.464 16 C -0.137 4.137 17 C -0.064 4.064 18 C -0.094 4.094 19 C -0.156 4.156 20 C 0.067 3.933 21 F -0.115 7.115 22 C -0.111 4.111 23 Cl -0.027 7.027 24 C -0.093 4.093 25 C -0.195 4.195 26 C -0.201 4.201 27 C -0.212 4.212 28 H 0.056 0.944 29 H 0.206 0.794 30 H 0.094 0.906 31 H 0.067 0.933 32 H 0.249 0.751 33 H 0.152 0.848 34 H 0.146 0.854 35 H 0.173 0.827 36 H 0.184 0.816 37 H 0.172 0.828 38 H 0.110 0.890 39 H 0.115 0.885 40 H 0.123 0.877 41 H 0.102 0.898 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.904 -13.664 10.794 17.436 hybrid contribution -0.100 1.136 -0.100 1.145 sum -1.004 -12.527 10.694 16.501 Atomic orbital electron populations 1.69777 1.06250 1.25612 1.59925 1.25298 0.96023 1.00174 1.04478 0.85473 0.77268 0.80602 0.77941 1.21318 1.23079 1.20372 1.19383 0.91059 0.84607 1.39847 0.90678 1.42534 1.05316 1.00247 1.88008 1.20136 0.94168 0.84797 0.91995 0.92366 1.21407 0.97744 0.97203 0.83242 1.45965 1.50818 1.21956 1.17487 1.20944 0.77679 0.83874 0.87634 1.90695 1.57985 1.24205 1.73477 1.20729 1.01908 0.98519 0.92550 1.19490 0.94210 0.95986 0.96722 1.21317 0.92778 0.98329 0.96948 1.21348 1.02686 0.93524 0.98080 1.17642 0.87087 0.89463 0.99075 1.91505 1.74247 1.61465 1.84297 1.21048 0.91991 0.95469 1.02638 1.98374 1.83328 1.50958 1.70033 1.20987 1.00791 0.91757 0.95735 1.22956 0.93830 1.03720 0.98951 1.23028 0.95297 0.98253 1.03489 1.22732 1.04934 0.94319 0.99239 0.94391 0.79399 0.90592 0.93340 0.75054 0.84806 0.85368 0.82655 0.81648 0.82831 0.89032 0.88498 0.87750 0.89800 0.90030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -53.98 13.06 21.65 0.28 -53.70 16 2 C -0.07 -3.48 5.50 84.86 0.47 -3.01 16 3 Si 0.96 42.73 29.55 68.60 2.03 44.76 16 4 H -0.29 -12.64 7.11 99.48 0.71 -11.94 16 5 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 6 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.22 -10.40 8.63 84.03 0.73 -9.67 16 8 H 0.08 3.49 6.91 -2.91 -0.02 3.47 16 9 N -0.72 -30.71 4.54 -322.95 -1.47 -32.18 16 10 C 0.20 6.62 2.70 44.99 0.12 6.74 16 11 H 0.06 1.93 7.84 -2.39 -0.02 1.91 16 12 C 0.13 3.92 5.21 86.38 0.45 4.37 16 13 N -0.71 -19.88 5.39 -463.06 -2.49 -22.38 16 14 C 0.51 13.81 7.82 87.66 0.69 14.50 16 15 O -0.58 -20.08 16.03 -3.04 -0.05 -20.13 16 16 C -0.10 -1.80 5.83 29.10 0.17 -1.63 16 17 C -0.06 -1.27 4.37 -19.86 -0.09 -1.36 16 18 C -0.08 -1.44 9.70 22.27 0.22 -1.22 16 19 C -0.14 -2.60 10.03 22.31 0.22 -2.38 16 20 C 0.09 1.94 7.28 22.39 0.16 2.11 16 21 F -0.14 -3.20 16.84 44.97 0.76 -2.45 16 22 C -0.08 -1.87 6.33 22.36 0.14 -1.73 16 23 Cl -0.06 -1.19 28.62 -2.72 -0.08 -1.27 16 24 C -0.07 -1.52 9.48 22.28 0.21 -1.30 16 25 C -0.17 -5.49 5.36 -10.79 -0.06 -5.54 16 26 C -0.16 -4.27 10.18 30.62 0.31 -3.95 16 27 C -0.17 -5.74 9.78 30.62 0.30 -5.44 16 28 H 0.25 13.76 8.31 -92.71 -0.77 12.99 16 29 H 0.37 17.73 7.80 -92.71 -0.72 17.00 16 30 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.41 11.42 8.14 -92.71 -0.75 10.66 16 33 H 0.13 1.74 8.09 -2.38 -0.02 1.72 16 34 H 0.13 2.00 8.08 -2.39 -0.02 1.98 16 35 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 36 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 37 H 0.15 2.63 8.06 -2.91 -0.02 2.60 16 38 H 0.09 2.89 8.11 -2.39 -0.02 2.87 16 39 H 0.10 2.36 8.05 -2.39 -0.02 2.34 16 40 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 41 H 0.08 2.64 8.14 -2.38 -0.02 2.62 16 42 H 0.08 3.06 6.23 -2.39 -0.01 3.04 16 Total: -1.00 -62.02 377.84 2.61 -59.41 By element: Atomic # 1 Polarization: 37.84 SS G_CDS: -0.41 Total: 37.43 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: 4.04 Total: -9.51 kcal Atomic # 7 Polarization: -104.58 SS G_CDS: -3.68 Total: -108.26 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -0.05 Total: -20.13 kcal Atomic # 9 Polarization: -3.20 SS G_CDS: 0.76 Total: -2.45 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -0.08 Total: -1.27 kcal Total: -62.02 2.61 -59.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266432263.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.128 kcal (2) G-P(sol) polarization free energy of solvation -62.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds