Wall clock time and date at job start Sat Apr 11 2020 05:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86799 * 120.00207 * 2 1 4 4 H 1.48499 * 109.47087 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46687 * 299.99781 * 3 2 1 6 6 H 1.48498 * 109.47085 * 59.99917 * 3 2 1 7 7 C 1.38805 * 120.00003 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00259 * 179.97438 * 7 2 1 9 9 S 1.76200 * 119.99624 * 0.02562 * 7 2 1 10 10 C 1.81002 * 99.99834 * 179.97438 * 9 7 2 11 11 C 1.50705 * 109.47304 * 179.97438 * 10 9 7 12 12 O 1.21277 * 119.99578 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99858 * 179.97438 * 11 10 9 14 14 C 1.46496 * 119.99477 * 180.02562 * 13 11 10 15 15 C 1.53006 * 109.46996 * 180.02562 * 14 13 11 16 16 H 1.09003 * 110.27010 * 307.09031 * 15 14 13 17 17 C 1.54597 * 110.39284 * 69.23329 * 15 14 13 18 18 C 1.54934 * 102.91806 * 140.91778 * 17 15 14 19 19 N 1.48535 * 103.23039 * 322.58567 * 18 17 15 20 20 C 1.46901 * 110.99931 * 159.72007 * 19 18 17 21 21 C 1.50703 * 109.46896 * 52.60582 * 20 19 18 22 22 C 1.38424 * 122.54128 * 269.99888 * 21 20 19 23 23 C 1.33385 * 114.92103 * 180.02562 * 22 21 20 24 24 S 1.75884 * 109.59663 * 359.97438 * 23 22 21 25 25 C 1.33394 * 122.53830 * 90.02748 * 21 20 19 26 26 C 1.47897 * 105.81765 * 39.21079 * 19 18 17 27 27 H 0.97000 * 120.00068 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47173 * 60.00259 * 10 9 7 29 29 H 1.09000 * 109.47094 * 300.00026 * 10 9 7 30 30 H 0.96997 * 119.99979 * 0.02562 * 13 11 10 31 31 H 1.09004 * 109.47479 * 60.00379 * 14 13 11 32 32 H 1.09000 * 109.47491 * 300.00211 * 14 13 11 33 33 H 1.08993 * 110.72529 * 259.27910 * 17 15 14 34 34 H 1.09004 * 110.72136 * 22.56473 * 17 15 14 35 35 H 1.09001 * 110.66723 * 204.15292 * 18 17 15 36 36 H 1.08996 * 110.67092 * 81.02168 * 18 17 15 37 37 H 1.08998 * 109.47453 * 292.60632 * 20 19 18 38 38 H 1.09001 * 109.47131 * 172.60099 * 20 19 18 39 39 H 1.07999 * 122.53445 * 0.04604 * 22 21 20 40 40 H 1.08000 * 125.20169 * 179.97438 * 23 22 21 41 41 H 1.07995 * 125.20296 * 359.70761 * 25 21 20 42 42 H 1.09001 * 109.92288 * 94.02295 * 26 19 18 43 43 H 1.09001 * 109.91536 * 215.12062 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0005 11 6 1.9872 -5.3028 0.0012 12 8 0.7910 -5.5023 0.0011 13 7 2.8440 -6.3432 0.0008 14 6 2.3302 -7.7151 0.0008 15 6 3.5022 -8.6987 0.0009 16 1 4.1880 -8.4691 -0.8147 17 6 4.2451 -8.6513 1.3559 18 6 4.5879 -10.1398 1.6152 19 7 3.3916 -10.8579 1.1057 20 6 3.7040 -12.2646 0.8200 21 6 4.3422 -12.8935 2.0317 22 6 5.7109 -12.8907 2.2384 23 6 6.1111 -13.4905 3.3605 24 16 4.7124 -14.1049 4.2321 25 6 3.6309 -13.4956 2.9861 26 6 2.9869 -10.1444 -0.1249 27 1 -0.4850 0.8400 0.0004 28 1 3.1243 -3.7315 0.8906 29 1 3.1243 -3.7314 -0.8894 30 1 3.8008 -6.1836 0.0004 31 1 1.7213 -7.8751 -0.8890 32 1 1.7219 -7.8753 0.8910 33 1 5.1536 -8.0543 1.2771 34 1 3.5940 -8.2633 2.1393 35 1 4.7218 -10.3237 2.6812 36 1 5.4781 -10.4323 1.0585 37 1 4.3925 -12.3199 -0.0232 38 1 2.7857 -12.7982 0.5748 39 1 6.4022 -12.4370 1.5437 40 1 7.1371 -13.5844 3.6844 41 1 2.5551 -13.5900 2.9950 42 1 3.4339 -10.6234 -0.9961 43 1 1.9007 -10.1479 -0.2160 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266500739.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:48 Heat of formation + Delta-G solvation = -0.347912 kcal Electronic energy + Delta-G solvation = -23439.988249 eV Core-core repulsion = 19930.850457 eV Total energy + Delta-G solvation = -3509.137792 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.11107 -39.05932 -37.92434 -34.85599 -32.48007 -32.41084 -30.37344 -29.67920 -28.92096 -26.67246 -25.49772 -24.42040 -23.58424 -21.29592 -20.60396 -20.13209 -19.18284 -18.04532 -17.82516 -16.54303 -16.44226 -16.07406 -15.60879 -15.20437 -15.06708 -14.79561 -14.48036 -14.00703 -13.85746 -13.60100 -13.38162 -13.18943 -13.11557 -12.91300 -12.60594 -12.58223 -12.34685 -11.92097 -11.84574 -11.65797 -11.50525 -11.12255 -11.07164 -11.05061 -11.00819 -10.89047 -10.73850 -9.79331 -9.37219 -9.21887 -9.06812 -8.92796 -8.83534 -8.64978 -8.21350 -6.48460 -6.20775 -3.91010 0.62622 1.27709 1.60111 2.23384 3.05910 3.14051 3.22134 3.28991 3.33815 3.71990 3.75876 4.21306 4.28002 4.30848 4.45822 4.58692 4.64214 4.82084 4.91795 5.00058 5.10002 5.12650 5.14431 5.20677 5.23232 5.26084 5.30781 5.54055 5.57175 5.59454 5.62753 5.71836 5.79445 5.88467 5.92393 5.98537 6.00307 6.06113 6.15719 6.52749 6.62534 6.66945 7.60852 7.74492 8.36438 8.65409 9.24636 10.86718 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.029345 B = 0.001587 C = 0.001560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.938727 B =17639.809565 C =17947.397418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.153 4.153 11 C 0.531 3.469 12 O -0.518 6.518 13 N -0.739 5.739 14 C 0.132 3.868 15 C -0.109 4.109 16 H 0.082 0.918 17 C -0.122 4.122 18 C 0.040 3.960 19 N -0.510 5.510 20 C 0.105 3.895 21 C -0.104 4.104 22 C -0.128 4.128 23 C -0.214 4.214 24 S 0.092 5.908 25 C -0.188 4.188 26 C 0.043 3.957 27 H 0.268 0.732 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.397 0.603 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.044 0.956 37 H 0.046 0.954 38 H 0.085 0.915 39 H 0.137 0.863 40 H 0.163 0.837 41 H 0.166 0.834 42 H 0.049 0.951 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.369 -30.015 3.721 33.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.317 3.683 12 O -0.392 6.392 13 N -0.393 5.393 14 C 0.008 3.992 15 C -0.128 4.128 16 H 0.100 0.900 17 C -0.160 4.160 18 C -0.088 4.088 19 N -0.234 5.234 20 C -0.025 4.025 21 C -0.116 4.116 22 C -0.159 4.159 23 C -0.349 4.349 24 S 0.356 5.644 25 C -0.324 4.324 26 C -0.085 4.085 27 H 0.078 0.922 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.230 0.770 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.104 0.896 39 H 0.154 0.846 40 H 0.181 0.819 41 H 0.183 0.817 42 H 0.067 0.933 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 11.569 -31.062 5.474 33.595 hybrid contribution 3.359 2.037 -1.899 4.363 sum 14.929 -29.025 3.576 32.835 Atomic orbital electron populations 1.70029 1.05946 1.27327 1.46966 1.24997 0.95027 0.99031 0.94570 0.86116 0.79573 0.81903 0.77894 1.19637 1.20573 1.20570 1.22914 0.94943 0.91676 1.58792 0.90889 1.85408 1.04994 0.96322 1.96701 1.23531 1.06519 0.95493 1.04853 1.20292 0.86534 0.86276 0.75196 1.90703 1.15385 1.85623 1.47494 1.45987 1.09836 1.05547 1.77939 1.21340 0.95066 0.80260 1.02544 1.22243 0.97351 0.94609 0.98635 0.90009 1.22635 1.00433 0.95965 0.96960 1.23217 0.91533 0.93154 1.00893 1.64920 1.31233 1.00862 1.26373 1.20943 0.99452 0.89259 0.92826 1.18776 0.92945 1.01643 0.98247 1.20100 0.95233 1.02166 0.98419 1.25575 1.02397 1.06997 0.99937 1.84376 0.97476 1.57406 1.25185 1.25524 1.03456 1.05620 0.97845 1.22868 1.01985 0.92471 0.91189 0.92244 0.89274 0.89297 0.76976 0.91635 0.91117 0.90846 0.90048 0.90013 0.93797 0.93626 0.89636 0.84572 0.81936 0.81664 0.93283 0.89480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.27 13.22 55.49 0.73 -25.54 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.47 29.55 -169.99 -5.02 16.44 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 7 C -0.53 -15.31 9.50 30.94 0.29 -15.02 16 8 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 9 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 10 C -0.15 -3.10 6.16 36.01 0.22 -2.88 16 11 C 0.53 9.96 7.85 -10.98 -0.09 9.88 16 12 O -0.52 -11.93 15.86 5.56 0.09 -11.84 16 13 N -0.74 -9.73 5.43 -60.29 -0.33 -10.06 16 14 C 0.13 1.52 4.77 -4.04 -0.02 1.50 16 15 C -0.11 -0.88 3.02 -89.26 -0.27 -1.15 16 16 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 17 C -0.12 -0.97 6.42 -24.87 -0.16 -1.13 16 18 C 0.04 0.30 5.00 -1.90 -0.01 0.29 16 19 N -0.51 -4.15 5.39 -231.89 -1.25 -5.40 16 20 C 0.11 0.73 5.29 -4.97 -0.03 0.70 16 21 C -0.10 -0.75 4.46 -106.24 -0.47 -1.22 16 22 C -0.13 -0.85 8.70 -41.21 -0.36 -1.21 16 23 C -0.21 -1.34 11.23 29.04 0.33 -1.01 16 24 S 0.09 0.61 23.34 -107.50 -2.51 -1.90 16 25 C -0.19 -1.36 10.98 29.04 0.32 -1.04 16 26 C 0.04 0.33 6.35 -2.76 -0.02 0.32 16 27 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 28 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 29 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 30 H 0.40 4.05 8.41 -40.82 -0.34 3.71 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 0.93 8.00 -51.93 -0.42 0.51 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.78 7.77 -51.93 -0.40 0.38 16 35 H 0.08 0.70 7.75 -51.93 -0.40 0.29 16 36 H 0.04 0.30 7.37 -51.93 -0.38 -0.08 16 37 H 0.05 0.29 7.80 -51.93 -0.41 -0.12 16 38 H 0.09 0.55 8.12 -51.93 -0.42 0.13 16 39 H 0.14 0.75 7.66 -52.49 -0.40 0.34 16 40 H 0.16 0.71 8.06 -52.49 -0.42 0.28 16 41 H 0.17 1.02 8.06 -52.49 -0.42 0.60 16 42 H 0.05 0.33 7.57 -51.93 -0.39 -0.07 16 43 H 0.09 0.71 7.69 -51.93 -0.40 0.31 16 LS Contribution 380.98 15.07 5.74 5.74 Total: -1.00 -34.50 380.98 -11.59 -46.08 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -6.47 Total: 0.34 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: -0.36 Total: -10.00 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: -0.84 Total: -41.00 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.09 Total: -11.84 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.05 SS G_CDS: -4.72 Total: -5.78 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.50 -11.59 -46.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266500739.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.737 kcal (2) G-P(sol) polarization free energy of solvation -34.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds