Wall clock time and date at job start Sat Apr 11 2020 05:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86799 * 120.00207 * 2 1 4 4 H 1.48499 * 109.47087 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46687 * 299.99781 * 3 2 1 6 6 H 1.48498 * 109.47085 * 59.99917 * 3 2 1 7 7 C 1.38805 * 120.00003 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00259 * 179.97438 * 7 2 1 9 9 S 1.76200 * 119.99624 * 0.02562 * 7 2 1 10 10 C 1.81002 * 99.99834 * 179.97438 * 9 7 2 11 11 C 1.50705 * 109.47304 * 179.97438 * 10 9 7 12 12 O 1.21277 * 119.99578 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99858 * 179.97438 * 11 10 9 14 14 C 1.46496 * 119.99477 * 180.02562 * 13 11 10 15 15 C 1.53006 * 109.46996 * 180.02562 * 14 13 11 16 16 H 1.09003 * 110.27010 * 307.09031 * 15 14 13 17 17 C 1.54597 * 110.39284 * 69.23329 * 15 14 13 18 18 C 1.54934 * 102.91806 * 140.91778 * 17 15 14 19 19 N 1.48535 * 103.23039 * 322.58567 * 18 17 15 20 20 C 1.46901 * 110.99931 * 159.72007 * 19 18 17 21 21 C 1.50703 * 109.46896 * 52.60582 * 20 19 18 22 22 C 1.38424 * 122.54128 * 269.99888 * 21 20 19 23 23 C 1.33385 * 114.92103 * 180.02562 * 22 21 20 24 24 S 1.75884 * 109.59663 * 359.97438 * 23 22 21 25 25 C 1.33394 * 122.53830 * 90.02748 * 21 20 19 26 26 C 1.47897 * 105.81765 * 39.21079 * 19 18 17 27 27 H 0.97000 * 120.00068 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47173 * 60.00259 * 10 9 7 29 29 H 1.09000 * 109.47094 * 300.00026 * 10 9 7 30 30 H 0.96997 * 119.99979 * 0.02562 * 13 11 10 31 31 H 1.09004 * 109.47479 * 60.00379 * 14 13 11 32 32 H 1.09000 * 109.47491 * 300.00211 * 14 13 11 33 33 H 1.08993 * 110.72529 * 259.27910 * 17 15 14 34 34 H 1.09004 * 110.72136 * 22.56473 * 17 15 14 35 35 H 1.09001 * 110.66723 * 204.15292 * 18 17 15 36 36 H 1.08996 * 110.67092 * 81.02168 * 18 17 15 37 37 H 1.08998 * 109.47453 * 292.60632 * 20 19 18 38 38 H 1.09001 * 109.47131 * 172.60099 * 20 19 18 39 39 H 1.07999 * 122.53445 * 0.04604 * 22 21 20 40 40 H 1.08000 * 125.20169 * 179.97438 * 23 22 21 41 41 H 1.07995 * 125.20296 * 359.70761 * 25 21 20 42 42 H 1.09001 * 109.92288 * 94.02295 * 26 19 18 43 43 H 1.09001 * 109.91536 * 215.12062 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0005 11 6 1.9872 -5.3028 0.0012 12 8 0.7910 -5.5023 0.0011 13 7 2.8440 -6.3432 0.0008 14 6 2.3302 -7.7151 0.0008 15 6 3.5022 -8.6987 0.0009 16 1 4.1880 -8.4691 -0.8147 17 6 4.2451 -8.6513 1.3559 18 6 4.5879 -10.1398 1.6152 19 7 3.3916 -10.8579 1.1057 20 6 3.7040 -12.2646 0.8200 21 6 4.3422 -12.8935 2.0317 22 6 5.7109 -12.8907 2.2384 23 6 6.1111 -13.4905 3.3605 24 16 4.7124 -14.1049 4.2321 25 6 3.6309 -13.4956 2.9861 26 6 2.9869 -10.1444 -0.1249 27 1 -0.4850 0.8400 0.0004 28 1 3.1243 -3.7315 0.8906 29 1 3.1243 -3.7314 -0.8894 30 1 3.8008 -6.1836 0.0004 31 1 1.7213 -7.8751 -0.8890 32 1 1.7219 -7.8753 0.8910 33 1 5.1536 -8.0543 1.2771 34 1 3.5940 -8.2633 2.1393 35 1 4.7218 -10.3237 2.6812 36 1 5.4781 -10.4323 1.0585 37 1 4.3925 -12.3199 -0.0232 38 1 2.7857 -12.7982 0.5748 39 1 6.4022 -12.4370 1.5437 40 1 7.1371 -13.5844 3.6844 41 1 2.5551 -13.5900 2.9950 42 1 3.4339 -10.6234 -0.9961 43 1 1.9007 -10.1479 -0.2160 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266500739.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:47 Heat of formation + Delta-G solvation = -24.184688 kcal Electronic energy + Delta-G solvation = -23441.021889 eV Core-core repulsion = 19930.850457 eV Total energy + Delta-G solvation = -3510.171432 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.92749 -40.23188 -38.58291 -35.95948 -34.57919 -33.34687 -31.39465 -30.27360 -30.02938 -27.72786 -27.28347 -25.32392 -24.10611 -22.03445 -21.59805 -21.15352 -19.80539 -19.67138 -18.55073 -17.78124 -17.53446 -16.98595 -16.87671 -16.51667 -16.23853 -16.03112 -15.57668 -15.10306 -14.95106 -14.69079 -14.42240 -14.13895 -13.87516 -13.82465 -13.57076 -13.47266 -13.16879 -13.15046 -12.93308 -12.89236 -12.61061 -12.47509 -12.28972 -12.11857 -11.88278 -11.70163 -11.61460 -11.53697 -11.15358 -10.93691 -10.26080 -10.09461 -9.72169 -9.45506 -9.18890 -8.66091 -8.34197 -6.12225 0.12625 0.78621 1.10917 1.28056 1.42009 1.48147 1.59132 1.63508 1.73328 2.26739 2.32026 3.00034 3.18629 3.32786 3.59924 3.62485 3.84945 4.03058 4.04042 4.10222 4.30298 4.32197 4.36360 4.42429 4.47988 4.52162 4.52757 4.65587 4.72859 4.75077 4.80838 4.89847 4.95531 5.08311 5.12206 5.16783 5.27201 5.42801 5.46837 5.50419 5.54784 5.95454 6.08273 6.20728 6.53261 7.07189 7.27124 8.75323 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.029345 B = 0.001587 C = 0.001560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.938727 B =17639.809565 C =17947.397418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 1.000 3.000 4 H -0.256 1.256 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.545 4.545 8 H 0.084 0.916 9 S -0.154 6.154 10 C -0.129 4.129 11 C 0.532 3.468 12 O -0.569 6.569 13 N -0.710 5.710 14 C 0.134 3.866 15 C -0.096 4.096 16 H 0.103 0.897 17 C -0.121 4.121 18 C 0.046 3.954 19 N -0.526 5.526 20 C 0.107 3.893 21 C -0.109 4.109 22 C -0.136 4.136 23 C -0.215 4.215 24 S 0.084 5.916 25 C -0.204 4.204 26 C 0.044 3.956 27 H 0.271 0.729 28 H 0.110 0.890 29 H 0.111 0.889 30 H 0.416 0.584 31 H 0.059 0.941 32 H 0.052 0.948 33 H 0.091 0.909 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.086 0.914 39 H 0.150 0.850 40 H 0.182 0.818 41 H 0.168 0.832 42 H 0.066 0.934 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.625 -30.352 3.235 35.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.821 3.179 4 H -0.180 1.180 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.693 4.693 8 H 0.102 0.898 9 S 0.073 5.927 10 C -0.280 4.280 11 C 0.318 3.682 12 O -0.447 6.447 13 N -0.364 5.364 14 C 0.010 3.990 15 C -0.115 4.115 16 H 0.121 0.879 17 C -0.159 4.159 18 C -0.082 4.082 19 N -0.251 5.251 20 C -0.023 4.023 21 C -0.121 4.121 22 C -0.167 4.167 23 C -0.350 4.350 24 S 0.348 5.652 25 C -0.340 4.340 26 C -0.084 4.084 27 H 0.080 0.920 28 H 0.128 0.872 29 H 0.129 0.871 30 H 0.253 0.747 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.109 0.891 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.104 0.896 39 H 0.168 0.832 40 H 0.199 0.801 41 H 0.186 0.814 42 H 0.084 0.916 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 14.885 -31.442 4.990 35.143 hybrid contribution 2.377 1.985 -1.721 3.543 sum 17.262 -29.457 3.269 34.298 Atomic orbital electron populations 1.70194 1.08002 1.28536 1.48092 1.26144 0.95972 1.03363 0.93763 0.84892 0.78629 0.76284 0.78051 1.17953 1.19928 1.19991 1.23245 0.95376 0.91961 1.58731 0.89828 1.85608 1.10733 0.99337 1.97047 1.23373 1.03474 0.94341 1.06831 1.20080 0.86231 0.86754 0.75142 1.90693 1.17566 1.86158 1.50287 1.45715 1.10227 1.05079 1.75368 1.21431 0.96485 0.79717 1.01384 1.22168 0.96065 0.93752 0.99544 0.87900 1.22627 1.00686 0.96559 0.96034 1.23146 0.91880 0.92693 1.00467 1.64881 1.31860 1.01561 1.26780 1.20949 0.99776 0.88519 0.93033 1.18924 0.93388 1.01542 0.98289 1.20267 0.95153 1.02400 0.98846 1.25862 1.03033 1.06416 0.99664 1.84385 0.97944 1.57562 1.25334 1.25684 1.03886 1.06196 0.98277 1.22840 1.01612 0.92182 0.91752 0.92010 0.87223 0.87087 0.74701 0.92251 0.92980 0.89059 0.92096 0.91105 0.92327 0.92521 0.89585 0.83211 0.80099 0.81408 0.91559 0.90464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.27 13.22 21.65 0.29 -55.98 16 2 C 0.01 0.70 5.49 84.86 0.47 1.16 16 3 Si 1.00 43.61 29.55 68.60 2.03 45.63 16 4 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 5 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.55 -31.19 9.50 67.96 0.65 -30.55 16 8 H 0.08 4.43 7.80 -2.91 -0.02 4.40 16 9 S -0.15 -8.63 20.57 -56.49 -1.16 -9.79 16 10 C -0.13 -5.08 6.16 71.24 0.44 -4.64 16 11 C 0.53 19.64 7.85 87.66 0.69 20.33 16 12 O -0.57 -26.79 15.86 -3.02 -0.05 -26.84 16 13 N -0.71 -17.38 5.43 -463.05 -2.51 -19.89 16 14 C 0.13 2.92 4.77 86.38 0.41 3.33 16 15 C -0.10 -1.32 3.02 -9.91 -0.03 -1.35 16 16 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 17 C -0.12 -1.65 6.42 31.80 0.20 -1.45 16 18 C 0.05 0.60 5.00 86.65 0.43 1.03 16 19 N -0.53 -7.74 5.39 -887.57 -4.78 -12.52 16 20 C 0.11 1.30 5.29 85.56 0.45 1.76 16 21 C -0.11 -1.44 4.46 -20.92 -0.09 -1.53 16 22 C -0.14 -1.56 8.70 21.22 0.18 -1.37 16 23 C -0.21 -2.35 11.23 66.72 0.75 -1.60 16 24 S 0.08 1.06 23.34 -56.49 -1.32 -0.26 16 25 C -0.20 -2.84 10.98 66.72 0.73 -2.11 16 26 C 0.04 0.60 6.35 86.45 0.55 1.15 16 27 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 28 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 29 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 30 H 0.42 7.12 8.41 -92.71 -0.78 6.34 16 31 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 32 H 0.05 1.37 8.00 -2.39 -0.02 1.35 16 33 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.06 1.10 7.77 -2.39 -0.02 1.08 16 35 H 0.07 1.10 7.75 -2.39 -0.02 1.09 16 36 H 0.06 0.61 7.37 -2.39 -0.02 0.59 16 37 H 0.06 0.57 7.80 -2.39 -0.02 0.55 16 38 H 0.09 1.01 8.12 -2.39 -0.02 1.00 16 39 H 0.15 1.24 7.66 -2.91 -0.02 1.22 16 40 H 0.18 1.18 8.06 -2.91 -0.02 1.16 16 41 H 0.17 2.10 8.06 -2.91 -0.02 2.07 16 42 H 0.07 0.69 7.57 -2.39 -0.02 0.67 16 43 H 0.08 1.20 7.69 -2.39 -0.02 1.18 16 Total: -1.00 -77.05 380.98 -1.45 -78.50 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: 0.23 Total: 16.99 kcal Atomic # 6 Polarization: -21.67 SS G_CDS: 5.83 Total: -15.83 kcal Atomic # 7 Polarization: -81.38 SS G_CDS: -7.01 Total: -88.39 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -0.05 Total: -26.84 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 16 Polarization: -7.57 SS G_CDS: -2.48 Total: -10.05 kcal Total: -77.05 -1.45 -78.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266500739.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.312 kcal (2) G-P(sol) polarization free energy of solvation -77.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds