Wall clock time and date at job start Sat Apr 11 2020 05:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 119.99970 * 2 1 4 4 H 1.48497 * 109.47471 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.47059 * 300.00166 * 3 2 1 6 6 H 1.48500 * 109.47143 * 59.99966 * 3 2 1 7 7 C 1.38810 * 120.00177 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00480 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99658 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99543 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47148 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.50170 * 55.05873 * 11 10 9 13 13 C 1.53034 * 109.52825 * 175.14322 * 11 10 9 14 14 C 1.53037 * 109.53955 * 181.32688 * 13 11 10 15 15 C 1.53624 * 109.24371 * 298.51300 * 14 13 11 16 16 N 1.46922 * 108.54380 * 54.85703 * 15 14 13 17 17 C 1.34774 * 120.63150 * 126.36927 * 16 15 14 18 18 O 1.21578 * 119.99574 * 185.44754 * 17 16 15 19 19 C 1.47651 * 119.99947 * 5.44282 * 17 16 15 20 20 C 1.39701 * 120.12420 * 54.07609 * 19 17 16 21 21 C 1.37782 * 119.88636 * 180.02562 * 20 19 17 22 22 C 1.38715 * 120.15926 * 359.97438 * 21 20 19 23 23 F 1.35098 * 119.86917 * 180.02562 * 22 21 20 24 24 C 1.38562 * 120.26241 * 359.97438 * 22 21 20 25 25 C 1.38037 * 120.10545 * 0.02562 * 24 22 21 26 26 Cl 1.73603 * 120.07980 * 179.97438 * 25 24 22 27 27 C 1.46926 * 118.73360 * 306.09286 * 16 15 14 28 28 H 0.96991 * 119.99935 * 0.02562 * 1 2 3 29 29 H 0.97001 * 120.00532 * 0.02562 * 9 7 2 30 30 H 1.08998 * 109.47905 * 60.00108 * 10 9 7 31 31 H 1.09001 * 109.47235 * 299.99711 * 10 9 7 32 32 H 1.08998 * 109.45987 * 301.35359 * 13 11 10 33 33 H 1.09006 * 109.46231 * 61.32480 * 13 11 10 34 34 H 1.09003 * 109.49359 * 58.59342 * 14 13 11 35 35 H 1.09009 * 109.49969 * 178.67903 * 14 13 11 36 36 H 1.08998 * 109.73694 * 295.11236 * 15 14 13 37 37 H 1.09002 * 109.66121 * 174.55104 * 15 14 13 38 38 H 1.07997 * 120.05822 * 0.02562 * 20 19 17 39 39 H 1.08001 * 119.91801 * 180.02562 * 21 20 19 40 40 H 1.07999 * 119.95187 * 180.27337 * 24 22 21 41 41 H 1.09003 * 109.58610 * 173.64748 * 27 16 15 42 42 H 1.09003 * 109.58952 * 293.92539 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 6 1.0640 -4.8197 -0.0012 12 1 0.3805 -4.7137 -0.8437 13 6 1.8240 -6.1424 -0.1233 14 6 0.8280 -7.3038 -0.1573 15 6 0.0297 -7.3247 1.1551 16 7 -0.5884 -6.0057 1.3471 17 6 -1.9143 -5.8932 1.5611 18 8 -2.4294 -4.7936 1.6197 19 6 -2.7412 -7.1056 1.7243 20 6 -2.3999 -8.0632 2.6825 21 6 -3.1747 -9.1930 2.8303 22 6 -4.2924 -9.3810 2.0305 23 9 -5.0482 -10.4906 2.1807 24 6 -4.6373 -8.4348 1.0789 25 6 -3.8688 -7.2989 0.9216 26 17 -4.3012 -6.1141 -0.2713 27 6 0.2674 -4.8121 1.3074 28 1 -0.4849 0.8400 -0.0004 29 1 0.3556 -2.3881 -0.0005 30 1 2.6848 -3.7146 0.8894 31 1 2.6848 -3.7145 -0.8905 32 1 2.4111 -6.1404 -1.0417 33 1 2.4889 -6.2595 0.7325 34 1 0.1469 -7.1744 -0.9984 35 1 1.3688 -8.2438 -0.2678 36 1 0.6977 -7.5402 1.9889 37 1 -0.7469 -8.0876 1.0998 38 1 -1.5304 -7.9183 3.3063 39 1 -2.9116 -9.9334 3.5711 40 1 -5.5111 -8.5841 0.4620 41 1 -0.3523 -3.9165 1.3527 42 1 0.9527 -4.8254 2.1549 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266819867.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:55 Heat of formation + Delta-G solvation = -49.126233 kcal Electronic energy + Delta-G solvation = -27157.736347 eV Core-core repulsion = 23078.226486 eV Total energy + Delta-G solvation = -4079.509861 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.43746 -40.68940 -38.92050 -37.42641 -36.71292 -34.92859 -33.01943 -31.71829 -31.55435 -31.10359 -29.62837 -25.86878 -25.53456 -23.70257 -23.40944 -23.09351 -21.42139 -20.41065 -19.40748 -18.23711 -17.67089 -17.06553 -16.94145 -16.25654 -16.01028 -15.32822 -15.12484 -14.81633 -14.60835 -14.55592 -14.29345 -13.93835 -13.71550 -13.51464 -13.44062 -13.18348 -12.92336 -12.85240 -12.50699 -12.33281 -11.82569 -11.76429 -11.43328 -11.22487 -11.10306 -11.00984 -10.83051 -10.65126 -10.38290 -10.29940 -9.97459 -9.83453 -9.59827 -9.46513 -9.11322 -8.83877 -8.54075 -6.86454 -5.69134 -2.99103 0.28608 0.53726 1.72799 2.50110 2.82808 3.11456 3.47330 3.52182 3.55088 3.67784 4.13259 4.21290 4.37620 4.61032 4.66171 4.72005 4.85991 4.88172 4.96763 5.17751 5.25224 5.29387 5.34797 5.42715 5.49953 5.58658 5.63748 5.64047 5.78876 5.83469 5.94595 6.09068 6.12836 6.13120 6.20773 6.39146 6.53711 6.61091 6.78020 6.89111 7.39458 7.75524 8.15379 8.48413 9.59504 10.17467 10.51604 11.53084 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.017371 B = 0.002848 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.474417 B = 9829.092923 C =10748.454685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.013 4.013 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.733 5.733 10 C 0.161 3.839 11 C -0.107 4.107 12 H 0.075 0.925 13 C -0.112 4.112 14 C -0.133 4.133 15 C 0.103 3.897 16 N -0.603 5.603 17 C 0.553 3.447 18 O -0.502 6.502 19 C -0.122 4.122 20 C -0.049 4.049 21 C -0.154 4.154 22 C 0.128 3.872 23 F -0.130 7.130 24 C -0.152 4.152 25 C 0.028 3.972 26 Cl -0.025 7.025 27 C 0.121 3.879 28 H 0.255 0.745 29 H 0.385 0.615 30 H 0.020 0.980 31 H 0.021 0.979 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.149 0.851 39 H 0.148 0.852 40 H 0.152 0.848 41 H 0.105 0.895 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.410 -25.758 4.060 26.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.373 4.373 8 H 0.088 0.912 9 N -0.378 5.378 10 C 0.033 3.967 11 C -0.127 4.127 12 H 0.093 0.907 13 C -0.150 4.150 14 C -0.171 4.171 15 C -0.020 4.020 16 N -0.336 5.336 17 C 0.339 3.661 18 O -0.376 6.376 19 C -0.126 4.126 20 C -0.068 4.068 21 C -0.173 4.173 22 C 0.108 3.892 23 F -0.108 7.108 24 C -0.171 4.171 25 C 0.000 4.000 26 Cl 0.004 6.996 27 C 0.000 4.000 28 H 0.065 0.935 29 H 0.220 0.780 30 H 0.037 0.963 31 H 0.039 0.961 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.166 0.834 39 H 0.166 0.834 40 H 0.170 0.830 41 H 0.124 0.876 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.621 -24.945 3.989 25.879 hybrid contribution -0.047 0.735 -0.115 0.746 sum -5.668 -24.209 3.874 25.164 Atomic orbital electron populations 1.69687 1.05032 1.25509 1.57435 1.24763 0.95494 0.97667 1.03026 0.86145 0.78720 0.84311 0.77163 1.20614 1.21928 1.21888 1.19237 0.90971 0.84162 1.42885 0.91200 1.42431 1.05977 0.99943 1.89464 1.20627 0.92935 0.85165 0.97988 1.21687 0.97979 0.95143 0.97867 0.90694 1.21524 0.97433 0.93702 1.02367 1.21982 0.98603 0.99185 0.97353 1.21951 0.97406 0.84486 0.98189 1.48086 1.06493 1.08352 1.70690 1.18002 0.81958 0.88227 0.77912 1.90922 1.71498 1.26559 1.48656 1.19991 0.96613 0.97022 0.98973 1.21138 0.98966 0.90962 0.95742 1.21166 0.94966 0.99887 1.01251 1.17627 0.91012 0.83906 0.96676 1.91548 1.74684 1.49870 1.94703 1.20951 1.02252 0.93227 1.00703 1.20671 0.94304 0.91667 0.93329 1.98463 1.92164 1.55296 1.53641 1.21784 0.93175 0.87710 0.97346 0.93536 0.78045 0.96258 0.96082 0.91460 0.91715 0.91431 0.90860 0.91088 0.90109 0.83355 0.83399 0.83016 0.87647 0.91338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.05 13.06 55.49 0.72 -28.32 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.88 29.55 -169.99 -5.02 17.85 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 6 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 7 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.73 -18.89 5.38 -59.91 -0.32 -19.21 16 10 C 0.16 3.19 5.66 -4.04 -0.02 3.17 16 11 C -0.11 -1.71 2.37 -90.50 -0.21 -1.92 16 12 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 13 C -0.11 -1.31 5.17 -26.69 -0.14 -1.44 16 14 C -0.13 -1.26 6.10 -26.39 -0.16 -1.42 16 15 C 0.10 0.95 5.60 -3.49 -0.02 0.93 16 16 N -0.60 -8.10 2.97 -173.69 -0.52 -8.61 16 17 C 0.55 8.37 6.58 -12.42 -0.08 8.29 16 18 O -0.50 -9.98 15.57 5.30 0.08 -9.90 16 19 C -0.12 -1.41 4.61 -104.94 -0.48 -1.90 16 20 C -0.05 -0.40 7.77 -39.20 -0.30 -0.71 16 21 C -0.15 -1.06 10.01 -39.57 -0.40 -1.45 16 22 C 0.13 1.04 7.30 -39.29 -0.29 0.76 16 23 F -0.13 -1.09 17.26 2.25 0.04 -1.05 16 24 C -0.15 -1.37 9.79 -39.54 -0.39 -1.76 16 25 C 0.03 0.32 6.34 -39.09 -0.25 0.08 16 26 Cl -0.03 -0.34 27.36 -51.86 -1.42 -1.76 16 27 C 0.12 1.97 5.52 -3.71 -0.02 1.94 16 28 H 0.25 7.71 8.31 -40.82 -0.34 7.37 16 29 H 0.39 10.66 6.89 -40.82 -0.28 10.38 16 30 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.63 5.37 -51.93 -0.28 0.36 16 38 H 0.15 0.92 7.75 -52.49 -0.41 0.51 16 39 H 0.15 0.63 8.06 -52.49 -0.42 0.21 16 40 H 0.15 1.12 8.06 -52.49 -0.42 0.69 16 41 H 0.11 2.18 6.19 -51.93 -0.32 1.85 16 42 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 362.53 15.07 5.46 5.46 Total: -1.00 -33.96 362.53 -9.47 -43.43 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -5.49 Total: 5.06 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: -3.01 Total: -2.94 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: -0.11 Total: -56.15 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.08 Total: -9.90 kcal Atomic # 9 Polarization: -1.09 SS G_CDS: 0.04 Total: -1.05 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.85 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -1.42 Total: -1.76 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.96 -9.47 -43.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266819867.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.697 kcal (2) G-P(sol) polarization free energy of solvation -33.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds