Wall clock time and date at job start Sat Apr 11 2020 05:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 119.99970 * 2 1 4 4 H 1.48497 * 109.47471 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.47059 * 300.00166 * 3 2 1 6 6 H 1.48500 * 109.47143 * 59.99966 * 3 2 1 7 7 C 1.38810 * 120.00177 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00480 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99658 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99543 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47148 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.50170 * 55.05873 * 11 10 9 13 13 C 1.53034 * 109.52825 * 175.14322 * 11 10 9 14 14 C 1.53037 * 109.53955 * 181.32688 * 13 11 10 15 15 C 1.53624 * 109.24371 * 298.51300 * 14 13 11 16 16 N 1.46922 * 108.54380 * 54.85703 * 15 14 13 17 17 C 1.34774 * 120.63150 * 126.36927 * 16 15 14 18 18 O 1.21578 * 119.99574 * 185.44754 * 17 16 15 19 19 C 1.47651 * 119.99947 * 5.44282 * 17 16 15 20 20 C 1.39701 * 120.12420 * 54.07609 * 19 17 16 21 21 C 1.37782 * 119.88636 * 180.02562 * 20 19 17 22 22 C 1.38715 * 120.15926 * 359.97438 * 21 20 19 23 23 F 1.35098 * 119.86917 * 180.02562 * 22 21 20 24 24 C 1.38562 * 120.26241 * 359.97438 * 22 21 20 25 25 C 1.38037 * 120.10545 * 0.02562 * 24 22 21 26 26 Cl 1.73603 * 120.07980 * 179.97438 * 25 24 22 27 27 C 1.46926 * 118.73360 * 306.09286 * 16 15 14 28 28 H 0.96991 * 119.99935 * 0.02562 * 1 2 3 29 29 H 0.97001 * 120.00532 * 0.02562 * 9 7 2 30 30 H 1.08998 * 109.47905 * 60.00108 * 10 9 7 31 31 H 1.09001 * 109.47235 * 299.99711 * 10 9 7 32 32 H 1.08998 * 109.45987 * 301.35359 * 13 11 10 33 33 H 1.09006 * 109.46231 * 61.32480 * 13 11 10 34 34 H 1.09003 * 109.49359 * 58.59342 * 14 13 11 35 35 H 1.09009 * 109.49969 * 178.67903 * 14 13 11 36 36 H 1.08998 * 109.73694 * 295.11236 * 15 14 13 37 37 H 1.09002 * 109.66121 * 174.55104 * 15 14 13 38 38 H 1.07997 * 120.05822 * 0.02562 * 20 19 17 39 39 H 1.08001 * 119.91801 * 180.02562 * 21 20 19 40 40 H 1.07999 * 119.95187 * 180.27337 * 24 22 21 41 41 H 1.09003 * 109.58610 * 173.64748 * 27 16 15 42 42 H 1.09003 * 109.58952 * 293.92539 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 6 1.0640 -4.8197 -0.0012 12 1 0.3805 -4.7137 -0.8437 13 6 1.8240 -6.1424 -0.1233 14 6 0.8280 -7.3038 -0.1573 15 6 0.0297 -7.3247 1.1551 16 7 -0.5884 -6.0057 1.3471 17 6 -1.9143 -5.8932 1.5611 18 8 -2.4294 -4.7936 1.6197 19 6 -2.7412 -7.1056 1.7243 20 6 -2.3999 -8.0632 2.6825 21 6 -3.1747 -9.1930 2.8303 22 6 -4.2924 -9.3810 2.0305 23 9 -5.0482 -10.4906 2.1807 24 6 -4.6373 -8.4348 1.0789 25 6 -3.8688 -7.2989 0.9216 26 17 -4.3012 -6.1141 -0.2713 27 6 0.2674 -4.8121 1.3074 28 1 -0.4849 0.8400 -0.0004 29 1 0.3556 -2.3881 -0.0005 30 1 2.6848 -3.7146 0.8894 31 1 2.6848 -3.7145 -0.8905 32 1 2.4111 -6.1404 -1.0417 33 1 2.4889 -6.2595 0.7325 34 1 0.1469 -7.1744 -0.9984 35 1 1.3688 -8.2438 -0.2678 36 1 0.6977 -7.5402 1.9889 37 1 -0.7469 -8.0876 1.0998 38 1 -1.5304 -7.9183 3.3063 39 1 -2.9116 -9.9334 3.5711 40 1 -5.5111 -8.5841 0.4620 41 1 -0.3523 -3.9165 1.3527 42 1 0.9527 -4.8254 2.1549 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266819867.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:54 Heat of formation + Delta-G solvation = -70.473378 kcal Electronic energy + Delta-G solvation = -27158.662029 eV Core-core repulsion = 23078.226486 eV Total energy + Delta-G solvation = -4080.435543 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.09076 -41.69342 -39.82537 -38.63096 -37.62614 -36.60106 -34.53155 -33.09271 -32.37446 -31.98725 -31.18312 -27.32927 -26.77438 -24.90545 -24.44473 -24.13517 -22.66820 -21.63723 -20.44103 -19.19088 -18.94127 -18.49147 -17.85249 -17.28212 -16.76104 -16.70006 -16.25780 -16.06672 -15.79111 -15.42702 -15.37323 -15.26767 -14.99537 -14.56159 -14.41970 -14.35984 -14.10978 -13.97963 -13.84208 -13.65246 -13.02461 -12.91147 -12.74698 -12.49879 -12.43873 -12.19982 -12.13536 -12.01837 -11.93188 -11.80660 -11.55077 -11.31356 -11.01667 -10.96102 -10.18777 -9.90930 -9.64735 -9.00785 -7.94293 -5.24863 -0.47695 -0.13371 0.87289 1.45023 1.46983 1.47731 1.57183 1.85781 2.26695 2.55336 2.99443 3.29889 3.38750 3.50592 3.72459 3.81616 3.89960 3.90795 3.97533 4.10844 4.14454 4.23207 4.32021 4.45839 4.61375 4.62328 4.71279 4.78335 4.81070 4.85377 4.90830 4.92059 4.95411 5.05179 5.13673 5.24272 5.36243 5.47809 5.48061 5.51755 5.53691 6.26150 6.33117 7.04599 7.31597 8.08710 8.30293 9.29304 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.017371 B = 0.002848 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.474417 B = 9829.092923 C =10748.454685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.082 4.082 3 Si 0.976 3.024 4 H -0.261 1.261 5 H -0.295 1.295 6 H -0.294 1.294 7 C -0.243 4.243 8 H 0.081 0.919 9 N -0.749 5.749 10 C 0.158 3.842 11 C -0.095 4.095 12 H 0.045 0.955 13 C -0.105 4.105 14 C -0.128 4.128 15 C 0.096 3.904 16 N -0.598 5.598 17 C 0.548 3.452 18 O -0.567 6.567 19 C -0.139 4.139 20 C -0.038 4.038 21 C -0.131 4.131 22 C 0.132 3.868 23 F -0.128 7.128 24 C -0.150 4.150 25 C 0.012 3.988 26 Cl -0.059 7.059 27 C 0.129 3.871 28 H 0.249 0.751 29 H 0.370 0.630 30 H 0.031 0.969 31 H 0.025 0.975 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.050 0.950 35 H 0.113 0.887 36 H 0.104 0.896 37 H 0.101 0.899 38 H 0.175 0.825 39 H 0.187 0.813 40 H 0.163 0.837 41 H 0.050 0.950 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.360 -29.495 5.443 30.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.273 4.273 3 Si 0.805 3.195 4 H -0.185 1.185 5 H -0.222 1.222 6 H -0.222 1.222 7 C -0.374 4.374 8 H 0.099 0.901 9 N -0.392 5.392 10 C 0.032 3.968 11 C -0.115 4.115 12 H 0.063 0.937 13 C -0.143 4.143 14 C -0.166 4.166 15 C -0.025 4.025 16 N -0.330 5.330 17 C 0.336 3.664 18 O -0.446 6.446 19 C -0.143 4.143 20 C -0.056 4.056 21 C -0.150 4.150 22 C 0.112 3.888 23 F -0.106 7.106 24 C -0.169 4.169 25 C -0.016 4.016 26 Cl -0.030 7.030 27 C 0.006 3.994 28 H 0.058 0.942 29 H 0.202 0.798 30 H 0.049 0.951 31 H 0.043 0.957 32 H 0.091 0.909 33 H 0.103 0.897 34 H 0.069 0.931 35 H 0.131 0.869 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.192 0.808 39 H 0.204 0.796 40 H 0.181 0.819 41 H 0.069 0.931 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.502 -28.768 5.365 29.473 hybrid contribution -0.666 1.741 -0.514 1.933 sum -4.167 -27.027 4.851 27.773 Atomic orbital electron populations 1.69885 1.06907 1.25892 1.59651 1.25672 0.96338 1.01477 1.03858 0.85027 0.78366 0.79548 0.76537 1.18475 1.22207 1.22160 1.19711 0.91589 0.85265 1.40867 0.90149 1.42712 1.05556 1.01551 1.89375 1.20849 0.93576 0.84165 0.98246 1.21544 0.96978 0.96446 0.96537 0.93664 1.21506 0.97706 0.91483 1.03591 1.21988 0.97992 0.99827 0.96809 1.22360 0.98413 0.82355 0.99329 1.48157 1.05983 1.09166 1.69655 1.18615 0.82470 0.88622 0.76672 1.90888 1.72752 1.29293 1.51633 1.19817 0.96663 0.96715 1.01081 1.21385 0.99771 0.90039 0.94406 1.21516 0.93239 0.99612 1.00604 1.17719 0.91288 0.83475 0.96327 1.91564 1.74759 1.49655 1.94610 1.21029 1.02206 0.92552 1.01155 1.20752 0.95280 0.91988 0.93582 1.98448 1.92473 1.56941 1.55155 1.21439 0.92734 0.87278 0.97931 0.94208 0.79838 0.95094 0.95696 0.90871 0.89665 0.93131 0.86898 0.87808 0.88066 0.80775 0.79605 0.81936 0.93141 0.90036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -63.67 13.06 21.65 0.28 -63.39 16 2 C -0.08 -4.92 5.50 84.86 0.47 -4.46 16 3 Si 0.98 48.02 29.55 68.60 2.03 50.04 16 4 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 5 H -0.29 -14.51 7.11 99.48 0.71 -13.80 16 6 H -0.29 -14.48 7.11 99.48 0.71 -13.77 16 7 C -0.24 -14.07 9.99 84.03 0.84 -13.23 16 8 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 9 N -0.75 -40.15 5.38 -343.45 -1.85 -42.00 16 10 C 0.16 6.33 5.66 86.38 0.49 6.82 16 11 C -0.10 -3.08 2.37 -10.72 -0.03 -3.11 16 12 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 13 C -0.10 -2.18 5.17 30.62 0.16 -2.02 16 14 C -0.13 -2.00 6.10 30.82 0.19 -1.82 16 15 C 0.10 1.46 5.60 86.51 0.48 1.94 16 16 N -0.60 -15.87 2.97 -821.69 -2.44 -18.31 16 17 C 0.55 17.13 6.58 86.73 0.57 17.70 16 18 O -0.57 -24.50 15.57 -3.96 -0.06 -24.56 16 19 C -0.14 -3.10 4.61 -20.07 -0.09 -3.19 16 20 C -0.04 -0.48 7.77 22.52 0.17 -0.30 16 21 C -0.13 -1.20 10.01 22.28 0.22 -0.97 16 22 C 0.13 1.73 7.30 22.46 0.16 1.89 16 23 F -0.13 -1.72 17.26 44.97 0.78 -0.94 16 24 C -0.15 -2.50 9.79 22.30 0.22 -2.28 16 25 C 0.01 0.27 6.34 22.59 0.14 0.41 16 26 Cl -0.06 -1.72 27.36 -2.72 -0.07 -1.80 16 27 C 0.13 4.32 5.52 86.36 0.48 4.80 16 28 H 0.25 15.80 8.31 -92.71 -0.77 15.03 16 29 H 0.37 21.92 6.89 -92.71 -0.64 21.28 16 30 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.08 1.47 8.14 -2.38 -0.02 1.46 16 34 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.11 0.99 8.14 -2.38 -0.02 0.97 16 36 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.10 1.18 5.37 -2.39 -0.01 1.16 16 38 H 0.17 1.32 7.75 -2.91 -0.02 1.30 16 39 H 0.19 0.38 8.06 -2.91 -0.02 0.36 16 40 H 0.16 2.24 8.06 -2.91 -0.02 2.22 16 41 H 0.05 2.28 6.19 -2.39 -0.01 2.26 16 42 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -80.90 362.53 3.56 -77.34 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: 0.42 Total: 21.42 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: 4.48 Total: 2.19 kcal Atomic # 7 Polarization: -119.70 SS G_CDS: -4.00 Total: -123.70 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -0.06 Total: -24.56 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.78 Total: -0.94 kcal Atomic # 14 Polarization: 48.02 SS G_CDS: 2.03 Total: 50.04 kcal Atomic # 17 Polarization: -1.72 SS G_CDS: -0.07 Total: -1.80 kcal Total: -80.90 3.56 -77.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266819867.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.867 kcal (2) G-P(sol) polarization free energy of solvation -80.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds