Wall clock time and date at job start Sat Apr 11 2020 05:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 119.99628 * 2 1 4 4 H 1.48501 * 109.46958 * 239.71911 * 3 2 1 5 5 H 1.48494 * 109.47467 * 359.72520 * 3 2 1 6 6 H 1.48507 * 109.47223 * 119.72502 * 3 2 1 7 7 C 1.38805 * 120.00488 * 179.72110 * 2 1 3 8 8 H 1.07996 * 120.00567 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99782 * 0.02562 * 7 2 1 10 10 C 1.47426 * 125.64625 * 14.70518 * 9 7 2 11 11 C 1.54904 * 104.83243 * 155.83482 * 10 9 7 12 12 C 1.55157 * 101.58278 * 37.00644 * 11 10 9 13 13 C 1.47022 * 125.65203 * 194.39434 * 9 7 2 14 14 H 1.09008 * 109.88199 * 300.51904 * 13 9 7 15 15 C 1.53003 * 109.88008 * 61.67578 * 13 9 7 16 16 N 1.46500 * 109.47038 * 183.74371 * 15 13 9 17 17 C 1.34776 * 119.99797 * 185.66485 * 16 15 13 18 18 O 1.21276 * 120.00305 * 359.97438 * 17 16 15 19 19 C 1.50701 * 119.99724 * 180.02562 * 17 16 15 20 20 C 1.50700 * 109.46846 * 180.02562 * 19 17 16 21 21 C 1.38248 * 119.98215 * 99.99681 * 20 19 17 22 22 C 1.38179 * 120.03863 * 179.97438 * 21 20 19 23 23 C 1.38494 * 119.99818 * 0.02562 * 22 21 20 24 24 F 1.35107 * 120.01663 * 179.97438 * 23 22 21 25 25 C 1.38408 * 119.96560 * 359.97380 * 23 22 21 26 26 C 1.38335 * 119.97921 * 279.71748 * 20 19 17 27 27 Cl 1.73602 * 120.00220 * 0.02562 * 26 20 19 28 28 H 0.97004 * 119.99726 * 0.28288 * 1 2 3 29 29 H 1.09003 * 110.36505 * 274.67487 * 10 9 7 30 30 H 1.09005 * 110.36582 * 36.88595 * 10 9 7 31 31 H 1.09000 * 111.01033 * 155.08626 * 11 10 9 32 32 H 1.09011 * 111.00639 * 278.93403 * 11 10 9 33 33 H 1.08995 * 110.71944 * 82.86248 * 12 11 10 34 34 H 1.09004 * 110.71939 * 206.13743 * 12 11 10 35 35 H 1.09005 * 109.47140 * 303.74548 * 15 13 9 36 36 H 1.09003 * 109.46670 * 63.74348 * 15 13 9 37 37 H 0.97000 * 119.99708 * 5.66891 * 16 15 13 38 38 H 1.09008 * 109.46553 * 299.99585 * 19 17 16 39 39 H 1.08995 * 109.47353 * 59.99627 * 19 17 16 40 40 H 1.07998 * 119.97855 * 359.97438 * 21 20 19 41 41 H 1.08004 * 120.00322 * 179.97438 * 22 21 20 42 42 H 1.08005 * 120.02340 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1090 1.6935 -1.2091 5 1 1.2851 2.7465 -0.0067 6 1 3.0988 1.6995 1.2159 7 6 2.0103 -1.2020 0.0059 8 1 3.0903 -1.2020 0.0054 9 7 1.3256 -2.3880 0.0111 10 6 -0.1074 -2.5541 -0.2928 11 6 -0.2460 -4.0250 -0.7586 12 6 0.7647 -4.7436 0.1738 13 6 1.8992 -3.7073 0.3144 14 1 2.7003 -3.9339 -0.3893 15 6 2.4402 -3.7228 1.7456 16 7 3.0887 -5.0099 2.0085 17 6 3.5406 -5.2965 3.2455 18 8 3.4107 -4.4888 4.1408 19 6 4.2082 -6.6202 3.5158 20 6 4.6168 -6.6901 4.9646 21 6 3.8360 -7.3843 5.8700 22 6 4.2098 -7.4496 7.1986 23 6 5.3671 -6.8188 7.6241 24 9 5.7327 -6.8820 8.9233 25 6 6.1488 -6.1238 6.7178 26 6 5.7761 -6.0644 5.3869 27 17 6.7593 -5.1984 4.2480 28 1 -0.4850 0.8401 -0.0041 29 1 -0.7072 -2.3810 0.6007 30 1 -0.4079 -1.8725 -1.0885 31 1 -1.2588 -4.3930 -0.5947 32 1 0.0425 -4.1325 -1.8044 33 1 0.3113 -4.9582 1.1414 34 1 1.1356 -5.6573 -0.2908 35 1 3.1655 -2.9186 1.8686 36 1 1.6175 -3.5806 2.4464 37 1 3.1929 -5.6557 1.2923 38 1 3.5123 -7.4298 3.2955 39 1 5.0909 -6.7178 2.8838 40 1 2.9333 -7.8759 5.5385 41 1 3.5992 -7.9917 7.9055 42 1 7.0513 -5.6312 7.0487 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267274525.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:04 Heat of formation + Delta-G solvation = -44.450956 kcal Electronic energy + Delta-G solvation = -26575.977332 eV Core-core repulsion = 22496.670206 eV Total energy + Delta-G solvation = -4079.307126 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.21404 -40.13663 -38.88352 -37.57787 -36.66618 -34.23198 -32.93209 -32.47619 -31.26717 -29.76664 -28.94159 -27.31885 -24.83830 -23.80038 -23.47662 -22.14943 -20.46661 -20.07228 -19.47545 -18.13461 -17.23815 -17.04897 -16.45625 -16.33253 -15.89827 -15.51302 -15.14615 -14.93810 -14.60563 -14.29082 -14.10345 -13.97603 -13.83444 -13.53580 -13.13953 -12.91257 -12.36316 -12.18689 -12.06448 -11.89394 -11.69584 -11.59167 -11.54149 -11.30853 -11.13971 -10.95423 -10.78097 -10.25947 -10.14101 -9.97734 -9.86645 -9.75641 -9.64624 -9.26559 -8.84152 -8.67053 -8.57500 -6.85171 -5.77766 -3.14454 0.67437 0.76901 1.82497 2.85335 3.02484 3.39866 3.45202 3.45830 3.56448 3.90975 4.26727 4.37944 4.48130 4.55644 4.78597 4.96149 5.07220 5.17649 5.30373 5.32538 5.38963 5.48584 5.58317 5.59850 5.61392 5.75307 5.79138 5.96102 6.04666 6.12021 6.22302 6.39175 6.43930 6.53261 6.60971 6.69977 6.80609 7.04925 7.49858 7.59378 7.77311 7.77859 8.24516 8.48071 9.16343 9.77028 10.44076 11.34188 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.014695 B = 0.002652 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.902844 B =10554.186931 C =11442.024700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.000 4.000 3 Si 0.910 3.090 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.235 4.235 8 H 0.075 0.925 9 N -0.589 5.589 10 C 0.172 3.828 11 C -0.149 4.149 12 C -0.125 4.125 13 C 0.152 3.848 14 H 0.037 0.963 15 C 0.110 3.890 16 N -0.723 5.723 17 C 0.510 3.490 18 O -0.531 6.531 19 C -0.109 4.109 20 C -0.062 4.062 21 C -0.068 4.068 22 C -0.148 4.148 23 C 0.109 3.891 24 F -0.135 7.135 25 C -0.146 4.146 26 C 0.009 3.991 27 Cl -0.049 7.049 28 H 0.254 0.746 29 H 0.026 0.974 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.395 0.605 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.143 0.857 41 H 0.142 0.858 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.707 -19.899 8.389 23.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.198 4.198 3 Si 0.740 3.260 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.209 1.209 7 C -0.363 4.363 8 H 0.093 0.907 9 N -0.313 5.313 10 C 0.047 3.953 11 C -0.188 4.188 12 C -0.163 4.163 13 C 0.044 3.956 14 H 0.055 0.945 15 C -0.015 4.015 16 N -0.374 5.374 17 C 0.294 3.706 18 O -0.407 6.407 19 C -0.149 4.149 20 C -0.064 4.064 21 C -0.086 4.086 22 C -0.167 4.167 23 C 0.089 3.911 24 F -0.113 7.113 25 C -0.166 4.166 26 C -0.018 4.018 27 Cl -0.020 7.020 28 H 0.065 0.935 29 H 0.044 0.956 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.228 0.772 38 H 0.125 0.875 39 H 0.125 0.875 40 H 0.160 0.840 41 H 0.160 0.840 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 8.625 -18.934 8.960 22.654 hybrid contribution 0.676 0.751 -0.059 1.012 sum 9.301 -18.183 8.901 22.279 Atomic orbital electron populations 1.69924 1.05023 1.25446 1.55751 1.24904 0.95671 0.97859 1.01340 0.86235 0.78620 0.83086 0.78051 1.21058 1.21532 1.20926 1.18925 0.90345 0.82192 1.44859 0.90738 1.44466 1.06352 1.01059 1.79441 1.21455 0.84822 0.90109 0.98882 1.23011 0.97570 0.99660 0.98536 1.22598 0.97094 0.96952 0.99671 1.21129 0.94458 0.88075 0.91986 0.94550 1.22226 0.97027 0.83040 0.99169 1.46103 1.60408 1.20410 1.10488 1.20235 0.79109 0.88160 0.83060 1.90746 1.56257 1.49521 1.44194 1.20755 1.02859 0.97778 0.93498 1.19247 0.93433 0.97878 0.95824 1.20840 0.98690 0.97469 0.91622 1.21188 0.96418 1.01883 0.97230 1.17438 0.95314 0.99936 0.78408 1.91523 1.91455 1.94774 1.33595 1.20921 1.02083 1.02190 0.91399 1.20447 0.93779 0.97012 0.90557 1.98401 1.68979 1.74890 1.59718 0.93537 0.95618 0.90982 0.92364 0.92318 0.91832 0.92435 0.91577 0.91644 0.77170 0.87460 0.87459 0.83953 0.84030 0.83673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.57 10.58 55.49 0.59 -25.99 16 2 C 0.00 -0.01 5.47 -17.43 -0.10 -0.11 16 3 Si 0.91 22.12 29.55 -169.99 -5.02 17.09 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 7 C -0.23 -6.40 9.74 -15.06 -0.15 -6.55 16 8 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 9 N -0.59 -14.43 3.13 -162.58 -0.51 -14.94 16 10 C 0.17 4.05 5.42 -2.53 -0.01 4.04 16 11 C -0.15 -2.66 7.08 -24.59 -0.17 -2.83 16 12 C -0.13 -1.99 6.16 -24.91 -0.15 -2.15 16 13 C 0.15 2.91 3.20 -66.96 -0.21 2.69 16 14 H 0.04 0.68 8.14 -51.92 -0.42 0.26 16 15 C 0.11 2.07 5.09 -4.04 -0.02 2.05 16 16 N -0.72 -10.06 5.34 -60.29 -0.32 -10.38 16 17 C 0.51 7.29 7.61 -10.99 -0.08 7.21 16 18 O -0.53 -10.10 15.94 5.56 0.09 -10.02 16 19 C -0.11 -1.04 5.30 -29.03 -0.15 -1.20 16 20 C -0.06 -0.67 4.42 -104.58 -0.46 -1.13 16 21 C -0.07 -0.61 9.66 -39.60 -0.38 -0.99 16 22 C -0.15 -1.33 10.03 -39.51 -0.40 -1.73 16 23 C 0.11 1.13 7.30 -39.42 -0.29 0.84 16 24 F -0.13 -1.44 17.27 2.25 0.04 -1.40 16 25 C -0.15 -1.57 9.81 -39.48 -0.39 -1.96 16 26 C 0.01 0.11 6.20 -39.51 -0.25 -0.14 16 27 Cl -0.05 -0.59 27.33 -51.86 -1.42 -2.00 16 28 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 29 H 0.03 0.66 8.06 -51.93 -0.42 0.24 16 30 H 0.07 1.89 6.93 -51.93 -0.36 1.53 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.06 1.01 8.14 -51.92 -0.42 0.59 16 33 H 0.06 1.01 7.79 -51.93 -0.40 0.60 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 1.44 7.88 -51.93 -0.41 1.03 16 36 H 0.07 1.39 8.04 -51.93 -0.42 0.97 16 37 H 0.40 4.15 8.39 -40.82 -0.34 3.80 16 38 H 0.11 0.68 8.00 -51.92 -0.42 0.26 16 39 H 0.11 0.88 7.34 -51.93 -0.38 0.49 16 40 H 0.14 0.91 8.04 -52.49 -0.42 0.49 16 41 H 0.14 0.93 8.06 -52.48 -0.42 0.51 16 42 H 0.15 1.35 8.06 -52.48 -0.42 0.92 16 LS Contribution 368.25 15.07 5.55 5.55 Total: -1.00 -32.71 368.25 -9.88 -42.59 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -5.65 Total: 1.44 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: -3.22 Total: -1.95 kcal Atomic # 7 Polarization: -51.06 SS G_CDS: -0.24 Total: -51.30 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.09 Total: -10.02 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.42 Total: -2.00 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.71 -9.88 -42.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267274525.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.860 kcal (2) G-P(sol) polarization free energy of solvation -32.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds