Wall clock time and date at job start Sat Apr 11 2020 05:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 119.99628 * 2 1 4 4 H 1.48501 * 109.46958 * 239.71911 * 3 2 1 5 5 H 1.48494 * 109.47467 * 359.72520 * 3 2 1 6 6 H 1.48507 * 109.47223 * 119.72502 * 3 2 1 7 7 C 1.38805 * 120.00488 * 179.72110 * 2 1 3 8 8 H 1.07996 * 120.00567 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99782 * 0.02562 * 7 2 1 10 10 C 1.47426 * 125.64625 * 14.70518 * 9 7 2 11 11 C 1.54904 * 104.83243 * 155.83482 * 10 9 7 12 12 C 1.55157 * 101.58278 * 37.00644 * 11 10 9 13 13 C 1.47022 * 125.65203 * 194.39434 * 9 7 2 14 14 H 1.09008 * 109.88199 * 300.51904 * 13 9 7 15 15 C 1.53003 * 109.88008 * 61.67578 * 13 9 7 16 16 N 1.46500 * 109.47038 * 183.74371 * 15 13 9 17 17 C 1.34776 * 119.99797 * 185.66485 * 16 15 13 18 18 O 1.21276 * 120.00305 * 359.97438 * 17 16 15 19 19 C 1.50701 * 119.99724 * 180.02562 * 17 16 15 20 20 C 1.50700 * 109.46846 * 180.02562 * 19 17 16 21 21 C 1.38248 * 119.98215 * 99.99681 * 20 19 17 22 22 C 1.38179 * 120.03863 * 179.97438 * 21 20 19 23 23 C 1.38494 * 119.99818 * 0.02562 * 22 21 20 24 24 F 1.35107 * 120.01663 * 179.97438 * 23 22 21 25 25 C 1.38408 * 119.96560 * 359.97380 * 23 22 21 26 26 C 1.38335 * 119.97921 * 279.71748 * 20 19 17 27 27 Cl 1.73602 * 120.00220 * 0.02562 * 26 20 19 28 28 H 0.97004 * 119.99726 * 0.28288 * 1 2 3 29 29 H 1.09003 * 110.36505 * 274.67487 * 10 9 7 30 30 H 1.09005 * 110.36582 * 36.88595 * 10 9 7 31 31 H 1.09000 * 111.01033 * 155.08626 * 11 10 9 32 32 H 1.09011 * 111.00639 * 278.93403 * 11 10 9 33 33 H 1.08995 * 110.71944 * 82.86248 * 12 11 10 34 34 H 1.09004 * 110.71939 * 206.13743 * 12 11 10 35 35 H 1.09005 * 109.47140 * 303.74548 * 15 13 9 36 36 H 1.09003 * 109.46670 * 63.74348 * 15 13 9 37 37 H 0.97000 * 119.99708 * 5.66891 * 16 15 13 38 38 H 1.09008 * 109.46553 * 299.99585 * 19 17 16 39 39 H 1.08995 * 109.47353 * 59.99627 * 19 17 16 40 40 H 1.07998 * 119.97855 * 359.97438 * 21 20 19 41 41 H 1.08004 * 120.00322 * 179.97438 * 22 21 20 42 42 H 1.08005 * 120.02340 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1090 1.6935 -1.2091 5 1 1.2851 2.7465 -0.0067 6 1 3.0988 1.6995 1.2159 7 6 2.0103 -1.2020 0.0059 8 1 3.0903 -1.2020 0.0054 9 7 1.3256 -2.3880 0.0111 10 6 -0.1074 -2.5541 -0.2928 11 6 -0.2460 -4.0250 -0.7586 12 6 0.7647 -4.7436 0.1738 13 6 1.8992 -3.7073 0.3144 14 1 2.7003 -3.9339 -0.3893 15 6 2.4402 -3.7228 1.7456 16 7 3.0887 -5.0099 2.0085 17 6 3.5406 -5.2965 3.2455 18 8 3.4107 -4.4888 4.1408 19 6 4.2082 -6.6202 3.5158 20 6 4.6168 -6.6901 4.9646 21 6 3.8360 -7.3843 5.8700 22 6 4.2098 -7.4496 7.1986 23 6 5.3671 -6.8188 7.6241 24 9 5.7327 -6.8820 8.9233 25 6 6.1488 -6.1238 6.7178 26 6 5.7761 -6.0644 5.3869 27 17 6.7593 -5.1984 4.2480 28 1 -0.4850 0.8401 -0.0041 29 1 -0.7072 -2.3810 0.6007 30 1 -0.4079 -1.8725 -1.0885 31 1 -1.2588 -4.3930 -0.5947 32 1 0.0425 -4.1325 -1.8044 33 1 0.3113 -4.9582 1.1414 34 1 1.1356 -5.6573 -0.2908 35 1 3.1655 -2.9186 1.8686 36 1 1.6175 -3.5806 2.4464 37 1 3.1929 -5.6557 1.2923 38 1 3.5123 -7.4298 3.2955 39 1 5.0909 -6.7178 2.8838 40 1 2.9333 -7.8759 5.5385 41 1 3.5992 -7.9917 7.9055 42 1 7.0513 -5.6312 7.0487 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267274525.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:04 Heat of formation + Delta-G solvation = -64.537163 kcal Electronic energy + Delta-G solvation = -26576.848335 eV Core-core repulsion = 22496.670206 eV Total energy + Delta-G solvation = -4080.178130 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.01171 -41.12634 -39.95913 -39.10503 -37.51664 -35.67281 -34.39748 -33.74758 -32.00184 -31.43352 -30.50988 -28.32632 -26.65033 -25.37420 -24.21463 -23.04145 -22.01658 -21.38231 -21.02667 -18.96173 -18.80640 -17.92650 -17.82203 -17.46083 -16.86888 -16.70675 -16.36338 -16.26365 -15.82623 -15.66620 -15.49306 -14.96617 -14.77853 -14.68713 -14.43755 -13.98117 -13.88496 -13.64038 -13.42001 -13.04794 -13.02575 -12.86449 -12.82469 -12.64757 -12.39170 -12.27342 -12.06741 -12.00915 -11.85455 -11.68776 -11.46884 -11.37109 -10.93311 -10.67713 -10.03279 -9.98784 -9.64118 -8.84967 -7.89028 -5.26011 -0.10102 0.02777 0.99331 1.42704 1.46165 1.51535 1.74530 2.12913 2.45243 2.57824 3.15431 3.30895 3.53572 3.63973 3.73662 3.89316 3.96000 4.02973 4.08308 4.09843 4.29765 4.36462 4.46861 4.50825 4.57934 4.66396 4.76797 4.85955 4.87689 5.00780 5.04144 5.05344 5.18370 5.23697 5.25962 5.42847 5.47761 5.62431 5.67928 5.68101 5.79374 6.23494 6.68651 7.09245 7.39160 7.77067 8.42430 9.21710 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.014695 B = 0.002652 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.902844 B =10554.186931 C =11442.024700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.059 4.059 3 Si 0.969 3.031 4 H -0.273 1.273 5 H -0.293 1.293 6 H -0.284 1.284 7 C -0.239 4.239 8 H 0.075 0.925 9 N -0.612 5.612 10 C 0.173 3.827 11 C -0.134 4.134 12 C -0.110 4.110 13 C 0.147 3.853 14 H 0.052 0.948 15 C 0.133 3.867 16 N -0.708 5.708 17 C 0.508 3.492 18 O -0.583 6.583 19 C -0.098 4.098 20 C -0.077 4.077 21 C -0.065 4.065 22 C -0.145 4.145 23 C 0.095 3.905 24 F -0.140 7.140 25 C -0.159 4.159 26 C -0.009 4.009 27 Cl -0.063 7.063 28 H 0.247 0.753 29 H -0.010 1.010 30 H 0.034 0.966 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.108 0.892 35 H 0.026 0.974 36 H 0.034 0.966 37 H 0.417 0.583 38 H 0.153 0.847 39 H 0.124 0.876 40 H 0.176 0.824 41 H 0.168 0.832 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.976 -23.321 7.899 26.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.253 4.253 3 Si 0.797 3.203 4 H -0.199 1.199 5 H -0.219 1.219 6 H -0.211 1.211 7 C -0.368 4.368 8 H 0.093 0.907 9 N -0.337 5.337 10 C 0.048 3.952 11 C -0.173 4.173 12 C -0.148 4.148 13 C 0.040 3.960 14 H 0.069 0.931 15 C 0.006 3.994 16 N -0.361 5.361 17 C 0.296 3.704 18 O -0.463 6.463 19 C -0.137 4.137 20 C -0.078 4.078 21 C -0.082 4.082 22 C -0.163 4.163 23 C 0.076 3.924 24 F -0.119 7.119 25 C -0.179 4.179 26 C -0.036 4.036 27 Cl -0.034 7.034 28 H 0.057 0.943 29 H 0.008 0.992 30 H 0.052 0.948 31 H 0.101 0.899 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.126 0.874 35 H 0.044 0.956 36 H 0.053 0.947 37 H 0.254 0.746 38 H 0.170 0.830 39 H 0.142 0.858 40 H 0.193 0.807 41 H 0.185 0.815 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 8.931 -22.428 8.444 25.575 hybrid contribution 0.627 1.760 0.156 1.875 sum 9.558 -20.667 8.600 24.340 Atomic orbital electron populations 1.70128 1.06227 1.25408 1.57550 1.25653 0.96493 1.00916 1.02259 0.85299 0.77385 0.79429 0.78138 1.19858 1.21879 1.21061 1.19237 0.90665 0.83715 1.43232 0.90733 1.44740 1.06820 1.02261 1.79843 1.21270 0.84112 0.93602 0.96235 1.22875 0.99779 0.95179 0.99425 1.22589 0.94928 0.97394 0.99848 1.21363 0.96107 0.86610 0.91904 0.93054 1.21588 0.95127 0.84435 0.98274 1.45809 1.59800 1.18933 1.11546 1.21091 0.78007 0.89327 0.82020 1.90735 1.58148 1.51608 1.45775 1.20793 1.04018 0.95660 0.93201 1.19529 0.93312 0.98164 0.96837 1.21254 0.99159 0.96654 0.91176 1.21542 0.95785 1.01063 0.97952 1.17653 0.96068 1.00534 0.78180 1.91508 1.91611 1.94865 1.33898 1.21045 1.02623 1.02649 0.91541 1.20647 0.94544 0.97755 0.90646 1.98389 1.69464 1.75373 1.60126 0.94335 0.99183 0.94751 0.89938 0.91139 0.91539 0.87363 0.95577 0.94722 0.74562 0.82963 0.85763 0.80695 0.81486 0.83339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.30 10.58 21.65 0.23 -57.07 16 2 C -0.06 -3.42 5.47 84.86 0.46 -2.96 16 3 Si 0.97 46.78 29.55 68.60 2.03 48.80 16 4 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 5 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 6 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 7 C -0.24 -13.37 9.74 84.03 0.82 -12.55 16 8 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16 9 N -0.61 -30.43 3.13 -668.28 -2.09 -32.52 16 10 C 0.17 8.31 5.42 86.85 0.47 8.78 16 11 C -0.13 -4.45 7.08 31.98 0.23 -4.23 16 12 C -0.11 -3.09 6.16 31.78 0.20 -2.89 16 13 C 0.15 5.42 3.20 45.34 0.15 5.56 16 14 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 15 C 0.13 4.95 5.09 86.38 0.44 5.39 16 16 N -0.71 -18.02 5.34 -463.05 -2.47 -20.50 16 17 C 0.51 13.52 7.61 87.66 0.67 14.18 16 18 O -0.58 -22.07 15.94 -3.02 -0.05 -22.11 16 19 C -0.10 -1.51 5.30 29.10 0.15 -1.35 16 20 C -0.08 -1.45 4.42 -19.84 -0.09 -1.54 16 21 C -0.06 -0.94 9.66 22.26 0.22 -0.73 16 22 C -0.14 -2.22 10.03 22.32 0.22 -2.00 16 23 C 0.10 1.87 7.30 22.37 0.16 2.04 16 24 F -0.14 -2.90 17.27 44.97 0.78 -2.12 16 25 C -0.16 -3.37 9.81 22.34 0.22 -3.15 16 26 C -0.01 -0.20 6.20 22.32 0.14 -0.06 16 27 Cl -0.06 -1.47 27.33 -2.72 -0.07 -1.55 16 28 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 29 H -0.01 -0.53 8.06 -2.39 -0.02 -0.55 16 30 H 0.03 1.87 6.93 -2.38 -0.02 1.86 16 31 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 33 H 0.07 1.87 7.79 -2.39 -0.02 1.85 16 34 H 0.11 2.05 8.14 -2.38 -0.02 2.03 16 35 H 0.03 1.17 7.88 -2.38 -0.02 1.15 16 36 H 0.03 1.50 8.04 -2.39 -0.02 1.48 16 37 H 0.42 6.96 8.39 -92.71 -0.78 6.18 16 38 H 0.15 1.01 8.00 -2.38 -0.02 1.00 16 39 H 0.12 1.56 7.34 -2.39 -0.02 1.54 16 40 H 0.18 1.35 8.04 -2.91 -0.02 1.32 16 41 H 0.17 1.63 8.06 -2.91 -0.02 1.61 16 42 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 Total: -1.00 -77.32 368.25 3.07 -74.25 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: 0.27 Total: 8.31 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: 4.45 Total: 4.50 kcal Atomic # 7 Polarization: -105.74 SS G_CDS: -4.33 Total: -110.08 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: -0.05 Total: -22.11 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 0.78 Total: -2.12 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.80 kcal Atomic # 17 Polarization: -1.47 SS G_CDS: -0.07 Total: -1.55 kcal Total: -77.32 3.07 -74.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267274525.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.713 kcal (2) G-P(sol) polarization free energy of solvation -77.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds