Wall clock time and date at job start Sat Apr 11 2020 05:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 119.99669 * 2 1 4 4 H 1.48507 * 109.47056 * 240.00080 * 3 2 1 5 5 H 1.48508 * 109.47207 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47333 * 120.00013 * 3 2 1 7 7 C 1.38813 * 120.00732 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00190 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99548 * 0.02562 * 7 2 1 10 10 C 1.47426 * 125.65098 * 0.03593 * 9 7 2 11 11 C 1.54909 * 104.83381 * 204.09440 * 10 9 7 12 12 C 1.55157 * 101.57958 * 322.98989 * 11 10 9 13 13 H 1.09002 * 110.72213 * 277.13898 * 12 11 10 14 14 C 1.53001 * 110.87088 * 153.93501 * 12 11 10 15 15 C 1.52996 * 109.47434 * 177.54647 * 14 12 11 16 16 N 1.46497 * 109.47458 * 179.97438 * 15 14 12 17 17 C 1.34777 * 120.00116 * 179.97438 * 16 15 14 18 18 O 1.21571 * 119.99937 * 0.02562 * 17 16 15 19 19 C 1.47695 * 119.99696 * 180.02562 * 17 16 15 20 20 C 1.39668 * 120.16298 * 359.97438 * 19 17 16 21 21 C 1.37856 * 119.90578 * 180.02562 * 20 19 17 22 22 C 1.38461 * 120.22655 * 0.02562 * 21 20 19 23 23 C 1.38302 * 120.32528 * 0.02562 * 22 21 20 24 24 Cl 1.73595 * 119.94998 * 180.02562 * 23 22 21 25 25 C 1.38441 * 120.09472 * 359.67846 * 23 22 21 26 26 F 1.35095 * 120.11516 * 180.29990 * 25 23 22 27 27 C 1.47018 * 125.64797 * 179.97438 * 9 7 2 28 28 H 0.96996 * 120.00556 * 0.02562 * 1 2 3 29 29 H 1.08998 * 110.36876 * 322.93757 * 10 9 7 30 30 H 1.09009 * 110.36320 * 85.14431 * 10 9 7 31 31 H 1.09000 * 111.00466 * 204.91585 * 11 10 9 32 32 H 1.08997 * 111.00194 * 81.06198 * 11 10 9 33 33 H 1.08999 * 109.47061 * 297.54951 * 14 12 11 34 34 H 1.09006 * 109.46767 * 57.54604 * 14 12 11 35 35 H 1.08999 * 109.47244 * 300.00191 * 15 14 12 36 36 H 1.09005 * 109.46729 * 59.99925 * 15 14 12 37 37 H 0.96998 * 119.99716 * 0.02562 * 16 15 14 38 38 H 1.08001 * 120.05271 * 359.97438 * 20 19 17 39 39 H 1.07990 * 119.89202 * 180.02562 * 21 20 19 40 40 H 1.08000 * 119.83804 * 179.97438 * 22 21 20 41 41 H 1.08998 * 109.88222 * 59.56024 * 27 9 7 42 42 H 1.09005 * 110.01447 * 298.46604 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2126 5 1 1.2850 2.7466 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 -0.1413 -2.5333 -0.0007 11 6 -0.4019 -3.9323 0.6111 12 6 0.7787 -4.7524 0.0271 13 1 0.5471 -5.0981 -0.9803 14 6 1.1246 -5.9333 0.9365 15 6 2.2493 -6.7536 0.3017 16 7 2.5809 -7.8839 1.1726 17 6 3.5497 -8.7494 0.8140 18 8 4.1488 -8.5919 -0.2321 19 6 3.8835 -9.8893 1.6918 20 6 3.1978 -10.0731 2.8946 21 6 3.5140 -11.1386 3.7102 22 6 4.5098 -12.0272 3.3414 23 6 5.1957 -11.8535 2.1531 24 17 6.4419 -12.9738 1.7000 25 6 4.8848 -10.7917 1.3209 26 9 5.5503 -10.6252 0.1571 27 6 1.9320 -3.7274 0.0005 28 1 -0.4851 0.8400 -0.0004 29 1 -0.5998 -1.7589 0.6142 30 1 -0.5264 -2.4851 -1.0194 31 1 -1.3589 -4.3329 0.2768 32 1 -0.3532 -3.8980 1.6994 33 1 1.4502 -5.5608 1.9077 34 1 0.2440 -6.5627 1.0653 35 1 1.9237 -7.1261 -0.6696 36 1 3.1298 -6.1241 0.1728 37 1 2.1026 -8.0098 2.0070 38 1 2.4213 -9.3812 3.1857 39 1 2.9834 -11.2808 4.6399 40 1 4.7528 -12.8595 3.9854 41 1 2.5580 -3.8509 0.8843 42 1 2.5306 -3.8659 -0.8999 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267569997.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:18 Heat of formation + Delta-G solvation = -39.314114 kcal Electronic energy + Delta-G solvation = -25969.729208 eV Core-core repulsion = 21890.644832 eV Total energy + Delta-G solvation = -4079.084376 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -49.27397 -40.44110 -38.92054 -37.80912 -37.01831 -35.35158 -33.19292 -32.02123 -31.04719 -30.60307 -28.96942 -26.72403 -25.09465 -24.27321 -23.26917 -22.25499 -21.06393 -20.09990 -19.46084 -18.64040 -17.55401 -17.22691 -16.84298 -16.31987 -16.03086 -15.68318 -15.63341 -15.21570 -14.94069 -14.58421 -14.07451 -13.76079 -13.72367 -13.60840 -13.42272 -12.92462 -12.55294 -12.33740 -12.17585 -12.09616 -11.90749 -11.71674 -11.58769 -11.57468 -11.09052 -10.91079 -10.74139 -10.31186 -10.16459 -10.00928 -9.90864 -9.74277 -9.67564 -9.46262 -9.30723 -9.19154 -8.62319 -6.79997 -5.62794 -3.04146 0.04726 0.36894 1.42202 2.32510 2.81782 3.13345 3.42194 3.46209 3.47605 3.49046 4.03530 4.11436 4.27792 4.47511 4.51433 4.75539 4.92578 5.06415 5.16281 5.23401 5.26992 5.36400 5.49331 5.53165 5.58157 5.60952 5.76014 5.86431 5.95475 6.00250 6.11389 6.19865 6.30147 6.38686 6.60910 6.64055 6.77941 6.98374 7.21108 7.54548 7.65628 7.88015 7.92774 8.39306 9.25207 9.86304 10.51582 11.41054 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.023907 B = 0.001843 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.926605 B =15190.794873 C =15664.010311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.013 4.013 3 Si 0.914 3.086 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.221 4.221 8 H 0.076 0.924 9 N -0.605 5.605 10 C 0.151 3.849 11 C -0.138 4.138 12 C -0.098 4.098 13 H 0.072 0.928 14 C -0.116 4.116 15 C 0.117 3.883 16 N -0.720 5.720 17 C 0.554 3.446 18 O -0.518 6.518 19 C -0.159 4.159 20 C -0.054 4.054 21 C -0.125 4.125 22 C -0.059 4.059 23 C -0.088 4.088 24 Cl -0.042 7.042 25 C 0.169 3.831 26 F -0.100 7.100 27 C 0.139 3.861 28 H 0.252 0.748 29 H 0.105 0.895 30 H 0.011 0.989 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.398 0.602 38 H 0.144 0.856 39 H 0.148 0.852 40 H 0.148 0.852 41 H 0.022 0.978 42 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.185 -27.799 10.258 29.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.208 4.208 3 Si 0.745 3.255 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.350 4.350 8 H 0.094 0.906 9 N -0.331 5.331 10 C 0.026 3.974 11 C -0.177 4.177 12 C -0.117 4.117 13 H 0.091 0.909 14 C -0.154 4.154 15 C -0.006 4.006 16 N -0.372 5.372 17 C 0.339 3.661 18 O -0.394 6.394 19 C -0.163 4.163 20 C -0.073 4.073 21 C -0.144 4.144 22 C -0.078 4.078 23 C -0.115 4.115 24 Cl -0.013 7.013 25 C 0.148 3.852 26 F -0.078 7.078 27 C 0.013 3.987 28 H 0.063 0.937 29 H 0.123 0.877 30 H 0.029 0.971 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.234 0.766 38 H 0.162 0.838 39 H 0.165 0.835 40 H 0.166 0.834 41 H 0.040 0.960 42 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 4.718 -27.503 9.372 29.436 hybrid contribution 0.504 0.657 0.088 0.833 sum 5.223 -26.845 9.460 28.938 Atomic orbital electron populations 1.69786 1.04871 1.24808 1.57786 1.24787 0.95741 0.97709 1.02587 0.86153 0.78391 0.83052 0.77907 1.21224 1.21588 1.21187 1.19049 0.90490 0.82561 1.42874 0.90598 1.44509 1.01999 0.99798 1.86806 1.21927 0.84702 0.92642 0.98154 1.23033 0.95833 0.98857 0.99945 1.22093 0.97580 0.93702 0.98351 0.90911 1.21794 0.97029 0.96757 0.99851 1.21587 0.99192 0.86317 0.93459 1.45933 1.37896 1.28160 1.25186 1.17851 0.80568 0.82014 0.85642 1.90886 1.50853 1.73892 1.23812 1.20108 0.99839 0.98163 0.98211 1.21381 0.97288 0.97112 0.91472 1.21156 0.97941 0.94427 1.00842 1.21211 0.93650 0.99374 0.93518 1.20962 0.97988 0.94924 0.97671 1.98409 1.50828 1.59665 1.92396 1.17399 0.91598 0.93379 0.82862 1.91655 1.77667 1.94500 1.43934 1.21366 0.93662 0.85939 0.97714 0.93741 0.87685 0.97136 0.92482 0.92199 0.91087 0.91552 0.91116 0.90579 0.76636 0.83800 0.83469 0.83381 0.96001 0.96250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.11 10.09 55.49 0.56 -26.55 16 2 C -0.01 -0.37 5.49 -17.43 -0.10 -0.47 16 3 Si 0.91 22.32 29.55 -169.99 -5.02 17.29 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 6 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.22 -6.27 10.27 -15.06 -0.15 -6.42 16 8 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 9 N -0.61 -15.67 3.39 -170.07 -0.58 -16.25 16 10 C 0.15 3.65 5.89 -2.53 -0.01 3.63 16 11 C -0.14 -2.49 6.54 -24.58 -0.16 -2.66 16 12 C -0.10 -1.60 2.95 -88.79 -0.26 -1.86 16 13 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 14 C -0.12 -1.39 4.73 -26.73 -0.13 -1.52 16 15 C 0.12 1.44 5.54 -4.05 -0.02 1.42 16 16 N -0.72 -7.31 5.51 -61.30 -0.34 -7.64 16 17 C 0.55 6.95 7.77 -12.40 -0.10 6.85 16 18 O -0.52 -8.83 15.34 5.30 0.08 -8.75 16 19 C -0.16 -1.54 5.88 -104.92 -0.62 -2.16 16 20 C -0.05 -0.30 9.54 -39.19 -0.37 -0.68 16 21 C -0.13 -0.52 10.03 -39.64 -0.40 -0.92 16 22 C -0.06 -0.31 9.82 -39.48 -0.39 -0.70 16 23 C -0.09 -0.73 6.32 -39.48 -0.25 -0.98 16 24 Cl -0.04 -0.35 28.61 -51.86 -1.48 -1.83 16 25 C 0.17 1.83 7.26 -38.92 -0.28 1.55 16 26 F -0.10 -1.37 15.12 2.25 0.03 -1.34 16 27 C 0.14 2.89 6.10 -3.07 -0.02 2.87 16 28 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 29 H 0.11 2.86 5.87 -51.93 -0.30 2.55 16 30 H 0.01 0.28 8.14 -51.92 -0.42 -0.15 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.06 1.05 8.05 -51.93 -0.42 0.63 16 33 H 0.07 0.85 8.00 -51.93 -0.42 0.43 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.08 1.09 7.58 -51.93 -0.39 0.70 16 37 H 0.40 2.64 6.50 -40.82 -0.27 2.37 16 38 H 0.14 0.42 6.40 -52.49 -0.34 0.08 16 39 H 0.15 0.17 8.06 -52.49 -0.42 -0.25 16 40 H 0.15 0.41 8.06 -52.49 -0.42 -0.01 16 41 H 0.02 0.45 7.73 -51.93 -0.40 0.05 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 364.31 15.07 5.49 5.49 Total: -1.00 -34.42 364.31 -9.98 -44.40 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: -5.46 Total: -2.78 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -3.26 Total: -2.04 kcal Atomic # 7 Polarization: -50.09 SS G_CDS: -0.36 Total: -50.44 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: 0.08 Total: -8.75 kcal Atomic # 9 Polarization: -1.37 SS G_CDS: 0.03 Total: -1.34 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -1.48 Total: -1.83 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.42 -9.98 -44.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267569997.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.083 kcal (2) G-P(sol) polarization free energy of solvation -34.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds